Wall clock time and date at job start Wed Apr 1 2020 00:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46858 * 299.99573 * 3 2 1 6 6 H 1.48499 * 109.47129 * 59.99818 * 3 2 1 7 7 C 1.38815 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99688 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00124 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99942 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47026 * 179.97438 * 10 9 7 12 12 C 1.38243 * 119.99836 * 89.99958 * 11 10 9 13 13 C 1.38233 * 119.99586 * 179.97438 * 12 11 10 14 14 C 1.38231 * 120.00354 * 0.02572 * 13 12 11 15 15 C 1.50696 * 120.00100 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47148 * 89.99754 * 15 14 13 17 17 C 1.34773 * 119.99969 * 179.72251 * 16 15 14 18 18 O 1.21281 * 120.00220 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.52992 * 109.47274 * 180.02562 * 19 17 16 21 21 O 1.42969 * 109.47020 * 294.99809 * 20 19 17 22 22 C 1.43093 * 113.76984 * 181.20759 * 21 20 19 23 23 C 1.53258 * 108.94417 * 57.97091 * 22 21 20 24 24 C 1.53259 * 108.84432 * 305.47586 * 23 22 21 25 25 O 1.42965 * 109.47161 * 175.00118 * 20 19 17 26 26 C 1.38233 * 119.99938 * 0.25276 * 14 13 12 27 27 C 1.38231 * 119.99993 * 359.48995 * 26 14 13 28 28 H 0.97000 * 119.99521 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00247 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47099 * 60.00264 * 10 9 7 31 31 H 1.09002 * 109.47122 * 299.99899 * 10 9 7 32 32 H 1.08001 * 119.99577 * 0.02562 * 12 11 10 33 33 H 1.08005 * 119.99712 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.47545 * 330.00225 * 15 14 13 35 35 H 1.08998 * 109.47669 * 210.00168 * 15 14 13 36 36 H 0.97005 * 119.99811 * 0.02562 * 16 15 14 37 37 H 1.09004 * 109.46762 * 300.00389 * 19 17 16 38 38 H 1.08998 * 109.46924 * 59.99727 * 19 17 16 39 39 H 1.09000 * 109.47346 * 54.99769 * 20 19 17 40 40 H 1.08996 * 109.55582 * 298.12730 * 22 21 20 41 41 H 1.09001 * 109.55665 * 177.80747 * 22 21 20 42 42 H 1.09000 * 109.57710 * 185.66411 * 23 22 21 43 43 H 1.09002 * 109.67879 * 65.34752 * 23 22 21 44 44 H 1.08998 * 109.55957 * 294.68318 * 24 23 22 45 45 H 1.09004 * 109.64848 * 174.41367 * 24 23 22 46 46 H 1.08004 * 120.00309 * 179.73170 * 26 14 13 47 47 H 1.08006 * 120.00300 * 180.25191 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0785 -4.8023 0.0012 12 6 0.6288 -5.3279 -1.1958 13 6 -0.2692 -6.3788 -1.1951 14 6 -0.7179 -6.9039 0.0023 15 6 -1.6972 -8.0492 0.0029 16 7 -0.9648 -9.3180 0.0028 17 6 -1.6387 -10.4851 0.0090 18 8 -2.8515 -10.4851 0.0141 19 6 -0.8853 -11.7904 0.0095 20 6 -1.8796 -12.9531 0.0164 21 8 -2.6175 -12.9419 1.2408 22 6 -3.5597 -14.0127 1.3562 23 6 -2.8152 -15.3463 1.2298 24 6 -2.0132 -15.3436 -0.0762 25 8 -1.1692 -14.1883 -0.1006 26 6 -0.2727 -6.3745 1.1991 27 6 0.6294 -5.3271 1.1986 28 1 -0.4849 0.8401 -0.0004 29 1 0.3554 -2.3880 0.0005 30 1 2.6845 -3.7147 0.8905 31 1 2.6845 -3.7147 -0.8895 32 1 0.9798 -4.9178 -2.1313 33 1 -0.6202 -6.7897 -2.1303 34 1 -2.3242 -7.9917 -0.8869 35 1 -2.3236 -7.9913 0.8930 36 1 0.0053 -9.3181 0.0028 37 1 -0.2624 -11.8506 -0.8830 38 1 -0.2549 -11.8456 0.8970 39 1 -2.5670 -12.8484 -0.8231 40 1 -4.3022 -13.9325 0.5623 41 1 -4.0536 -13.9611 2.3265 42 1 -3.5338 -16.1658 1.2154 43 1 -2.1374 -15.4699 2.0744 44 1 -2.6971 -15.3139 -0.9244 45 1 -1.4011 -16.2438 -0.1323 46 1 -0.6265 -6.7819 2.1347 47 1 0.9804 -4.9161 2.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482028946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:50 Heat of formation + Delta-G solvation = -98.902753 kcal Electronic energy + Delta-G solvation = -27203.632493 eV Core-core repulsion = 23158.315925 eV Total energy + Delta-G solvation = -4045.316568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60145 -39.74683 -38.98523 -36.05384 -35.54683 -34.32391 -33.64071 -32.16021 -30.86362 -30.72078 -29.88223 -27.03214 -26.40337 -24.72114 -23.63798 -22.49124 -22.33620 -21.60127 -20.67791 -20.40838 -18.14200 -17.32462 -17.21327 -17.06398 -16.38226 -16.16444 -15.67281 -15.46962 -15.16927 -15.14592 -14.87861 -14.68900 -14.54643 -13.71823 -13.61527 -13.43145 -13.36021 -13.22710 -13.16062 -13.08208 -12.37238 -12.30893 -12.01012 -11.97048 -11.84213 -11.54419 -11.54174 -11.08918 -10.88023 -10.74289 -10.59425 -10.44328 -10.15934 -10.04688 -10.04325 -9.79125 -9.26185 -8.92340 -8.69238 -8.44169 -6.95835 -5.78134 -3.08075 1.38922 1.63859 2.43271 2.71970 3.24997 3.42406 3.45154 3.48138 3.50344 4.01727 4.24754 4.26547 4.34533 4.50560 4.60323 4.61748 4.67266 4.83090 4.85825 4.93006 4.95746 5.05562 5.18989 5.25060 5.27233 5.33697 5.36173 5.37281 5.55610 5.56441 5.61610 5.74100 5.85343 6.13985 6.16501 6.18011 6.21416 6.40512 6.47918 6.57235 6.62817 6.69653 6.76208 7.09447 7.21202 7.28678 7.67909 8.00144 8.39516 9.51235 10.07174 10.42890 11.44376 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.044694 B = 0.001537 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.330603 B =18211.288277 C =18382.213435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.727 5.727 10 C 0.184 3.816 11 C -0.064 4.064 12 C -0.107 4.107 13 C -0.104 4.104 14 C -0.125 4.125 15 C 0.167 3.833 16 N -0.724 5.724 17 C 0.519 3.481 18 O -0.532 6.532 19 C -0.129 4.129 20 C 0.264 3.736 21 O -0.378 6.378 22 C 0.058 3.942 23 C -0.194 4.194 24 C 0.059 3.941 25 O -0.396 6.396 26 C -0.103 4.103 27 C -0.106 4.106 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.100 0.900 46 H 0.119 0.881 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -32.618 -0.087 32.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.065 4.065 12 C -0.125 4.125 13 C -0.122 4.122 14 C -0.125 4.125 15 C 0.044 3.956 16 N -0.376 5.376 17 C 0.304 3.696 18 O -0.408 6.408 19 C -0.169 4.169 20 C 0.169 3.831 21 O -0.298 6.298 22 C -0.018 4.018 23 C -0.232 4.232 24 C -0.017 4.017 25 O -0.317 6.317 26 C -0.122 4.122 27 C -0.125 4.125 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.237 0.763 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.137 0.863 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.313 -32.343 0.035 32.629 hybrid contribution 0.246 0.794 -0.110 0.838 sum -4.068 -31.549 -0.075 31.810 Atomic orbital electron populations 1.69687 1.05142 1.25606 1.57473 1.24765 0.95535 0.97727 1.02839 0.86098 0.78769 0.83988 0.77209 1.20501 1.21825 1.21827 1.19291 0.91103 0.83954 1.43026 0.90994 1.42346 1.05954 0.99295 1.89521 1.19713 0.91882 0.83955 0.98751 1.20397 0.97186 0.96072 0.92805 1.21124 0.97289 0.95875 0.98221 1.20985 0.97413 0.96756 0.97061 1.19672 1.00384 0.98657 0.93832 1.20154 0.92604 0.79843 1.02965 1.46088 1.10618 1.05279 1.75626 1.20170 0.88097 0.85004 0.76290 1.90740 1.13743 1.87517 1.48793 1.21463 0.98541 0.90331 1.06565 1.22849 0.88928 0.83936 0.87409 1.88178 1.53223 1.48770 1.39634 1.22619 0.90780 0.85409 1.03028 1.22815 1.01201 0.99328 0.99853 1.22644 0.94108 0.88730 0.96246 1.88056 1.35481 1.14715 1.93431 1.20998 0.97325 0.96726 0.97115 1.21127 0.97231 0.95904 0.98227 0.93501 0.78050 0.95381 0.95379 0.85812 0.86329 0.90735 0.90687 0.76250 0.86523 0.87074 0.91737 0.92711 0.88275 0.89670 0.89949 0.92716 0.88164 0.86297 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.54 5.59 -61.08 -0.34 -18.88 16 10 C 0.18 3.71 6.38 -5.19 -0.03 3.67 16 11 C -0.06 -1.08 5.25 -104.62 -0.55 -1.63 16 12 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 13 C -0.10 -1.33 9.70 -39.59 -0.38 -1.71 16 14 C -0.12 -1.52 5.25 -104.63 -0.55 -2.07 16 15 C 0.17 1.82 5.80 -5.19 -0.03 1.79 16 16 N -0.72 -6.70 5.55 -61.47 -0.34 -7.05 16 17 C 0.52 5.49 7.71 -10.98 -0.08 5.40 16 18 O -0.53 -7.69 15.42 -8.86 -0.14 -7.82 16 19 C -0.13 -1.02 5.78 -27.88 -0.16 -1.18 16 20 C 0.26 2.51 2.80 37.15 0.10 2.61 16 21 O -0.38 -4.15 9.77 -64.76 -0.63 -4.78 16 22 C 0.06 0.44 6.96 37.29 0.26 0.70 16 23 C -0.19 -1.09 6.35 -26.46 -0.17 -1.26 16 24 C 0.06 0.36 6.96 37.29 0.26 0.62 16 25 O -0.40 -3.53 10.54 -59.03 -0.62 -4.15 16 26 C -0.10 -1.34 9.70 -39.59 -0.38 -1.72 16 27 C -0.11 -1.63 9.70 -39.59 -0.38 -2.01 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 29 H 0.39 10.52 7.66 -40.82 -0.31 10.21 16 30 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.40 2.90 8.46 -40.82 -0.35 2.56 16 37 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.63 7.96 -51.93 -0.41 0.22 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 47 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -34.49 394.27 -10.54 -45.03 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.37 Total: 8.19 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.73 Total: -6.19 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.04 Total: -53.55 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.39 Total: -16.75 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.49 -10.54 -45.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482028946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.876 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds