Wall clock time and date at job start Tue Mar 31 2020 20:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34777 * 120.00037 * 2 1 4 4 O 1.21587 * 120.00028 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99886 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00148 * 179.97438 * 5 3 2 7 7 C 1.50694 * 109.47439 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00144 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00510 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00386 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47033 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.52229 * 55.08041 * 11 10 9 13 13 C 1.53191 * 109.49637 * 295.00455 * 11 10 9 14 14 N 1.46930 * 108.76996 * 185.41558 * 13 11 10 15 15 C 1.36942 * 120.62512 * 233.57851 * 14 13 11 16 16 H 1.08002 * 119.99579 * 151.83393 * 15 14 13 17 17 C 1.38804 * 120.00133 * 331.83769 * 15 14 13 18 18 N 1.31622 * 120.00247 * 343.07682 * 17 15 14 19 19 Si 1.86810 * 119.99877 * 163.07636 * 17 15 14 20 20 H 1.48498 * 109.46844 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47269 * 120.00142 * 19 17 15 22 22 H 1.48497 * 109.46750 * 239.99912 * 19 17 15 23 23 C 1.46920 * 118.74352 * 53.86085 * 14 13 11 24 24 C 1.53634 * 108.54062 * 306.09033 * 23 14 13 25 25 C 1.53036 * 109.49784 * 175.16321 * 11 10 9 26 26 F 1.39900 * 109.45707 * 301.34000 * 25 11 10 27 27 F 1.39901 * 109.45951 * 61.30555 * 25 11 10 28 28 H 1.09003 * 109.47806 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46954 * 300.00026 * 1 2 3 30 30 H 1.09000 * 109.47340 * 59.99566 * 1 2 3 31 31 H 0.97001 * 119.99945 * 179.97438 * 2 1 3 32 32 H 0.97000 * 120.00161 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.47207 * 60.00206 * 6 5 3 34 34 H 1.08998 * 109.47545 * 300.00531 * 6 5 3 35 35 H 0.97005 * 119.99350 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.46702 * 60.00346 * 10 9 7 37 37 H 1.08993 * 109.46779 * 300.00421 * 10 9 7 38 38 H 1.08994 * 109.59021 * 65.62866 * 13 11 10 39 39 H 1.09003 * 109.58386 * 305.19346 * 13 11 10 40 40 H 0.97001 * 120.00021 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.59259 * 65.91779 * 23 14 13 42 42 H 1.08998 * 109.58990 * 186.35316 * 23 14 13 43 43 H 1.08995 * 109.63121 * 294.86788 * 24 23 14 44 44 H 1.08997 * 109.45758 * 174.73722 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2191 2.4358 0.0000 7 6 5.7007 2.1605 0.0001 8 8 6.1050 1.0170 0.0001 9 7 6.5766 3.1849 -0.0009 10 6 8.0170 2.9171 -0.0013 11 6 8.7820 4.2422 -0.0018 12 1 8.4551 4.8518 0.8406 13 6 8.5086 4.9899 -1.3106 14 7 9.3493 6.1942 -1.3515 15 6 8.7929 7.4264 -1.5694 16 1 9.2662 8.3109 -1.1693 17 6 7.6207 7.5385 -2.3043 18 7 7.2225 6.5404 -3.0644 19 14 6.6084 9.1059 -2.2147 20 1 7.2671 10.0686 -1.2957 21 1 6.5039 9.7059 -3.5690 22 1 5.2492 8.7889 -1.7075 23 6 10.7990 6.0506 -1.1606 24 6 11.0460 5.2916 0.1521 25 6 10.2823 3.9658 0.1194 26 9 10.5315 3.2551 1.2984 27 9 10.7072 3.2103 -0.9788 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9499 -0.8401 0.0004 32 1 3.9716 0.3271 0.0005 33 1 3.9555 3.0080 0.8895 34 1 3.9562 3.0069 -0.8904 35 1 6.2533 4.0994 -0.0013 36 1 8.2798 2.3451 -0.8911 37 1 8.2806 2.3461 0.8888 38 1 7.4578 5.2762 -1.3553 39 1 8.7506 4.3464 -2.1565 40 1 6.4035 6.6189 -3.5782 41 1 11.2239 5.4918 -1.9944 42 1 11.2599 7.0369 -1.1062 43 1 10.6978 5.8913 0.9930 44 1 12.1123 5.0946 0.2625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484196603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:39 Heat of formation + Delta-G solvation = -145.260122 kcal Electronic energy + Delta-G solvation = -29800.603074 eV Core-core repulsion = 25231.339520 eV Total energy + Delta-G solvation = -4569.263553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 15.11 seconds Orbital eigenvalues (eV) -48.57728 -46.52957 -40.33275 -39.37845 -37.39716 -35.12819 -34.77863 -34.36282 -32.81576 -31.37648 -29.84795 -28.68068 -26.36036 -25.33052 -24.86733 -22.53744 -21.46366 -21.03208 -20.54908 -19.60357 -19.02669 -17.41976 -16.92255 -16.85936 -16.54097 -16.12853 -16.02812 -15.58838 -15.28292 -15.21476 -14.94190 -14.48565 -14.21473 -14.13340 -13.66683 -13.53753 -13.31915 -13.20580 -13.04562 -12.92491 -12.85019 -12.47139 -12.34751 -12.27550 -11.77307 -11.71529 -11.55909 -11.24132 -10.88129 -10.64350 -10.52794 -10.42898 -10.11478 -10.03810 -9.95188 -9.70493 -9.51438 -9.08670 -8.93976 -8.67615 -6.94238 -5.98647 -3.43641 2.40702 2.58006 3.06919 3.24641 3.27216 3.37085 3.38184 4.13573 4.18755 4.34277 4.52681 4.65034 4.75230 4.89874 4.94578 5.14330 5.26276 5.28650 5.30885 5.35639 5.39196 5.47468 5.55622 5.75314 5.84788 5.95240 6.02163 6.15369 6.21532 6.22683 6.32053 6.43179 6.46569 6.69205 6.71262 6.95340 7.31586 7.50380 7.63016 7.83114 8.16231 8.21644 8.43491 8.98353 9.60168 10.15988 11.10076 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.003454 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.885051 B = 8105.233209 C =10431.962047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.705 3.295 4 O -0.590 6.590 5 N -0.733 5.733 6 C 0.119 3.881 7 C 0.511 3.489 8 O -0.547 6.547 9 N -0.711 5.711 10 C 0.129 3.871 11 C -0.165 4.165 12 H 0.099 0.901 13 C 0.178 3.822 14 N -0.591 5.591 15 C -0.260 4.260 16 H 0.070 0.930 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.286 1.286 23 C 0.144 3.856 24 C -0.171 4.171 25 C 0.300 3.700 26 F -0.213 7.213 27 F -0.199 7.199 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.399 0.601 32 H 0.407 0.593 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.410 0.590 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.034 0.966 40 H 0.257 0.743 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 -10.775 7.534 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.407 5.407 3 C 0.404 3.596 4 O -0.468 6.468 5 N -0.392 5.392 6 C -0.009 4.009 7 C 0.296 3.704 8 O -0.425 6.425 9 N -0.362 5.362 10 C 0.005 3.995 11 C -0.187 4.187 12 H 0.118 0.882 13 C 0.052 3.948 14 N -0.313 5.313 15 C -0.389 4.389 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.542 5.542 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.017 3.983 24 C -0.211 4.211 25 C 0.263 3.737 26 F -0.194 7.194 27 F -0.180 7.180 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.232 0.768 32 H 0.244 0.756 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.246 0.754 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.029 -10.607 7.408 13.880 hybrid contribution -0.111 0.247 -0.016 0.271 sum -5.139 -10.360 7.392 13.725 Atomic orbital electron populations 1.21390 0.78043 1.01906 1.02353 1.44867 1.07759 1.07145 1.80921 1.15842 0.81420 0.84389 0.77930 1.90952 1.67909 1.30206 1.57748 1.44706 1.04598 1.09713 1.80152 1.20895 0.88106 0.86683 1.05263 1.20418 0.88340 0.85397 0.76215 1.90673 1.79983 1.21289 1.50586 1.45809 1.06547 1.09813 1.74061 1.21293 0.78850 0.96578 1.02779 1.23208 0.91307 0.97642 1.06503 0.88231 1.20885 0.98639 0.86553 0.88738 1.44114 0.99802 1.04125 1.83275 1.19223 1.07116 0.84851 1.27759 0.91191 1.25096 1.00587 0.97621 0.95958 1.70020 1.24072 1.32004 1.28147 0.86224 0.80190 0.82804 0.77558 1.20164 1.21579 1.21273 1.21008 0.87244 0.98161 0.91909 1.23130 0.99855 0.94164 1.03951 1.21012 0.95619 0.86160 0.70888 1.92958 1.95693 1.81424 1.49370 1.92968 1.91606 1.78649 1.54798 0.90696 0.92374 0.92304 0.76823 0.75552 0.88338 0.87950 0.75395 0.90621 0.91196 0.88089 0.94831 0.93326 0.95043 0.91240 0.89215 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.80 10.70 59.84 0.64 1.44 16 2 N -0.75 -6.76 5.72 -72.08 -0.41 -7.18 16 3 C 0.70 9.12 8.57 -86.92 -0.74 8.37 16 4 O -0.59 -9.98 16.34 5.29 0.09 -9.89 16 5 N -0.73 -8.72 5.53 -66.42 -0.37 -9.09 16 6 C 0.12 1.47 6.15 -5.20 -0.03 1.44 16 7 C 0.51 7.26 7.90 -10.99 -0.09 7.17 16 8 O -0.55 -9.10 15.67 5.55 0.09 -9.01 16 9 N -0.71 -10.16 5.33 -60.30 -0.32 -10.48 16 10 C 0.13 2.05 4.83 -4.04 -0.02 2.03 16 11 C -0.17 -2.80 2.03 -90.50 -0.18 -2.98 16 12 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 13 C 0.18 3.73 4.18 -3.71 -0.02 3.72 16 14 N -0.59 -13.29 2.99 -172.05 -0.51 -13.81 16 15 C -0.26 -6.46 9.58 -15.06 -0.14 -6.60 16 16 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 17 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 18 N -0.90 -23.83 11.20 55.49 0.62 -23.21 16 19 Si 0.90 20.10 29.59 -169.99 -5.03 15.07 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.14 2.73 6.34 -3.48 -0.02 2.71 16 24 C -0.17 -2.73 5.64 -26.38 -0.15 -2.88 16 25 C 0.30 5.09 1.63 -26.69 -0.04 5.04 16 26 F -0.21 -3.54 16.41 2.25 0.04 -3.50 16 27 F -0.20 -3.69 15.72 2.25 0.04 -3.65 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.40 2.43 8.84 -40.82 -0.36 2.07 16 32 H 0.41 4.41 7.45 -40.82 -0.30 4.11 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.41 5.50 7.70 -40.82 -0.31 5.19 16 36 H 0.08 1.32 7.97 -51.93 -0.41 0.90 16 37 H 0.07 1.10 7.63 -51.93 -0.40 0.71 16 38 H 0.10 2.27 5.26 -51.93 -0.27 1.99 16 39 H 0.03 0.79 7.92 -51.93 -0.41 0.37 16 40 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 41 H 0.03 0.63 7.92 -51.93 -0.41 0.21 16 42 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -31.76 368.23 -7.34 -39.11 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.23 Total: 10.54 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: -0.89 Total: 19.55 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.99 Total: -63.76 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.07 Total: -7.15 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.76 -7.34 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484196603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.154 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.11 seconds