Wall clock time and date at job start Tue Mar 31 2020 20:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34777 * 120.00037 * 2 1 4 4 O 1.21587 * 120.00028 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99886 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00148 * 179.97438 * 5 3 2 7 7 C 1.50694 * 109.47439 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00144 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00510 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00386 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47033 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.52229 * 55.08041 * 11 10 9 13 13 C 1.53191 * 109.49637 * 295.00455 * 11 10 9 14 14 N 1.46930 * 108.76996 * 185.41558 * 13 11 10 15 15 C 1.36942 * 120.62512 * 233.57851 * 14 13 11 16 16 H 1.08002 * 119.99579 * 151.83393 * 15 14 13 17 17 C 1.38804 * 120.00133 * 331.83769 * 15 14 13 18 18 N 1.31622 * 120.00247 * 343.07682 * 17 15 14 19 19 Si 1.86810 * 119.99877 * 163.07636 * 17 15 14 20 20 H 1.48498 * 109.46844 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47269 * 120.00142 * 19 17 15 22 22 H 1.48497 * 109.46750 * 239.99912 * 19 17 15 23 23 C 1.46920 * 118.74352 * 53.86085 * 14 13 11 24 24 C 1.53634 * 108.54062 * 306.09033 * 23 14 13 25 25 C 1.53036 * 109.49784 * 175.16321 * 11 10 9 26 26 F 1.39900 * 109.45707 * 301.34000 * 25 11 10 27 27 F 1.39901 * 109.45951 * 61.30555 * 25 11 10 28 28 H 1.09003 * 109.47806 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46954 * 300.00026 * 1 2 3 30 30 H 1.09000 * 109.47340 * 59.99566 * 1 2 3 31 31 H 0.97001 * 119.99945 * 179.97438 * 2 1 3 32 32 H 0.97000 * 120.00161 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.47207 * 60.00206 * 6 5 3 34 34 H 1.08998 * 109.47545 * 300.00531 * 6 5 3 35 35 H 0.97005 * 119.99350 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.46702 * 60.00346 * 10 9 7 37 37 H 1.08993 * 109.46779 * 300.00421 * 10 9 7 38 38 H 1.08994 * 109.59021 * 65.62866 * 13 11 10 39 39 H 1.09003 * 109.58386 * 305.19346 * 13 11 10 40 40 H 0.97001 * 120.00021 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.59259 * 65.91779 * 23 14 13 42 42 H 1.08998 * 109.58990 * 186.35316 * 23 14 13 43 43 H 1.08995 * 109.63121 * 294.86788 * 24 23 14 44 44 H 1.08997 * 109.45758 * 174.73722 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2191 2.4358 0.0000 7 6 5.7007 2.1605 0.0001 8 8 6.1050 1.0170 0.0001 9 7 6.5766 3.1849 -0.0009 10 6 8.0170 2.9171 -0.0013 11 6 8.7820 4.2422 -0.0018 12 1 8.4551 4.8518 0.8406 13 6 8.5086 4.9899 -1.3106 14 7 9.3493 6.1942 -1.3515 15 6 8.7929 7.4264 -1.5694 16 1 9.2662 8.3109 -1.1693 17 6 7.6207 7.5385 -2.3043 18 7 7.2225 6.5404 -3.0644 19 14 6.6084 9.1059 -2.2147 20 1 7.2671 10.0686 -1.2957 21 1 6.5039 9.7059 -3.5690 22 1 5.2492 8.7889 -1.7075 23 6 10.7990 6.0506 -1.1606 24 6 11.0460 5.2916 0.1521 25 6 10.2823 3.9658 0.1194 26 9 10.5315 3.2551 1.2984 27 9 10.7072 3.2103 -0.9788 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9499 -0.8401 0.0004 32 1 3.9716 0.3271 0.0005 33 1 3.9555 3.0080 0.8895 34 1 3.9562 3.0069 -0.8904 35 1 6.2533 4.0994 -0.0013 36 1 8.2798 2.3451 -0.8911 37 1 8.2806 2.3461 0.8888 38 1 7.4578 5.2762 -1.3553 39 1 8.7506 4.3464 -2.1565 40 1 6.4035 6.6189 -3.5782 41 1 11.2239 5.4918 -1.9944 42 1 11.2599 7.0369 -1.1062 43 1 10.6978 5.8913 0.9930 44 1 12.1123 5.0946 0.2625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484196603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:34 Heat of formation + Delta-G solvation = -169.439519 kcal Electronic energy + Delta-G solvation = -29801.651571 eV Core-core repulsion = 25231.339520 eV Total energy + Delta-G solvation = -4570.312051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 6.56 seconds Orbital eigenvalues (eV) -49.96816 -47.92406 -41.41098 -40.51412 -38.93500 -36.42763 -35.68102 -35.46462 -34.51831 -32.77433 -31.51799 -29.71832 -27.45572 -26.98713 -26.06261 -24.08587 -22.91708 -22.02375 -21.75023 -21.08501 -20.01114 -18.99571 -18.30261 -18.06490 -17.82555 -17.29708 -17.21771 -16.94935 -16.75411 -16.40565 -16.30718 -15.69113 -15.50278 -15.32205 -15.14826 -14.78550 -14.65831 -14.61922 -14.26339 -14.21525 -14.07652 -13.81108 -13.47222 -13.27302 -13.19403 -13.02753 -13.02391 -12.98432 -12.63105 -12.19798 -12.12496 -11.86648 -11.61688 -11.55342 -11.39009 -11.07476 -10.57935 -10.52333 -10.23304 -9.87131 -8.77378 -7.89548 -5.36201 1.39844 1.46141 1.50270 1.55616 1.63315 2.06294 2.14867 2.51255 2.82953 3.16578 3.24546 3.31113 3.32042 3.54703 3.56891 3.65732 3.96111 4.09453 4.28857 4.32369 4.33870 4.47646 4.48386 4.56275 4.67591 4.69048 4.75235 4.91102 4.96564 4.97911 5.13535 5.22078 5.22690 5.28344 5.46497 5.59593 5.68536 5.90513 6.33041 6.36001 6.96537 7.01582 7.11107 7.48808 7.77885 8.30677 9.17529 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.003454 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.885051 B = 8105.233209 C =10431.962047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.737 5.737 3 C 0.699 3.301 4 O -0.634 6.634 5 N -0.728 5.728 6 C 0.124 3.876 7 C 0.516 3.484 8 O -0.570 6.570 9 N -0.708 5.708 10 C 0.138 3.862 11 C -0.151 4.151 12 H 0.114 0.886 13 C 0.191 3.809 14 N -0.608 5.608 15 C -0.263 4.263 16 H 0.074 0.926 17 C -0.039 4.039 18 N -0.929 5.929 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.300 1.300 22 H -0.288 1.288 23 C 0.139 3.861 24 C -0.160 4.160 25 C 0.298 3.702 26 F -0.207 7.207 27 F -0.210 7.210 28 H 0.114 0.886 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.415 0.585 32 H 0.414 0.586 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.415 0.585 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.000 1.000 40 H 0.251 0.749 41 H 0.019 0.981 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -11.052 9.131 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.393 5.393 3 C 0.398 3.602 4 O -0.515 6.515 5 N -0.387 5.387 6 C -0.004 4.004 7 C 0.303 3.697 8 O -0.450 6.450 9 N -0.359 5.359 10 C 0.013 3.987 11 C -0.172 4.172 12 H 0.132 0.868 13 C 0.064 3.936 14 N -0.331 5.331 15 C -0.392 4.392 16 H 0.092 0.908 17 C -0.235 4.235 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.227 1.227 22 H -0.214 1.214 23 C 0.014 3.986 24 C -0.199 4.199 25 C 0.261 3.739 26 F -0.188 7.188 27 F -0.191 7.191 28 H 0.133 0.867 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.251 0.749 32 H 0.252 0.748 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.018 0.982 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.891 -10.924 9.029 14.993 hybrid contribution -0.086 0.283 -0.542 0.618 sum -4.977 -10.641 8.487 14.492 Atomic orbital electron populations 1.21572 0.76907 1.04232 1.01360 1.44840 1.08468 1.06667 1.79357 1.16076 0.81491 0.84832 0.77771 1.90919 1.68709 1.32041 1.59874 1.44636 1.04429 1.09752 1.79871 1.20836 0.86664 0.87151 1.05737 1.20647 0.88922 0.84839 0.75312 1.90661 1.80490 1.22166 1.51679 1.45764 1.06012 1.10229 1.73926 1.21119 0.79626 0.95776 1.02191 1.22986 0.91987 0.97742 1.04515 0.86772 1.20574 0.97511 0.85909 0.89572 1.44374 1.01460 1.03815 1.83421 1.19520 1.07005 0.85913 1.26785 0.90820 1.25712 1.01720 0.99971 0.96138 1.70158 1.24275 1.33661 1.29329 0.85312 0.78774 0.80080 0.76845 1.19070 1.22746 1.21418 1.21116 0.85263 0.99082 0.93167 1.23026 1.01507 0.93040 1.02356 1.21093 0.95462 0.86604 0.70731 1.92970 1.95617 1.81330 1.48838 1.92955 1.91668 1.79017 1.55510 0.86709 0.93218 0.93488 0.74940 0.74826 0.87055 0.88254 0.74797 0.92481 0.90431 0.89775 0.98237 0.93937 0.96299 0.90269 0.87770 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.39 10.70 127.77 1.37 2.75 16 2 N -0.74 -12.23 5.72 -500.21 -2.86 -15.09 16 3 C 0.70 17.65 8.57 179.05 1.53 19.18 16 4 O -0.63 -21.46 16.34 -3.99 -0.07 -21.53 16 5 N -0.73 -16.81 5.53 -482.31 -2.67 -19.47 16 6 C 0.12 3.03 6.15 85.63 0.53 3.55 16 7 C 0.52 14.43 7.90 87.65 0.69 15.13 16 8 O -0.57 -18.66 15.67 -3.04 -0.05 -18.71 16 9 N -0.71 -19.97 5.33 -463.06 -2.47 -22.44 16 10 C 0.14 4.30 4.83 86.38 0.42 4.72 16 11 C -0.15 -4.98 2.03 -10.72 -0.02 -5.00 16 12 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 13 C 0.19 8.06 4.18 86.36 0.36 8.42 16 14 N -0.61 -27.11 2.99 -698.25 -2.09 -29.19 16 15 C -0.26 -12.87 9.58 84.03 0.81 -12.06 16 16 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 17 C -0.04 -1.98 4.92 84.86 0.42 -1.56 16 18 N -0.93 -50.15 11.20 21.65 0.24 -49.91 16 19 Si 0.96 41.31 29.59 68.60 2.03 43.34 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 23 C 0.14 5.13 6.34 86.51 0.55 5.68 16 24 C -0.16 -4.70 5.64 30.82 0.17 -4.52 16 25 C 0.30 9.59 1.63 30.62 0.05 9.64 16 26 F -0.21 -6.32 16.41 44.97 0.74 -5.59 16 27 F -0.21 -7.64 15.72 44.97 0.71 -6.94 16 28 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.41 4.22 8.84 -92.71 -0.82 3.40 16 32 H 0.41 8.56 7.45 -92.71 -0.69 7.87 16 33 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.42 11.02 7.70 -92.70 -0.71 10.30 16 36 H 0.06 2.01 7.97 -2.39 -0.02 1.99 16 37 H 0.08 2.34 7.63 -2.39 -0.02 2.32 16 38 H 0.08 3.85 5.26 -2.39 -0.01 3.83 16 39 H 0.00 -0.02 7.92 -2.39 -0.02 -0.04 16 40 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 41 H 0.02 0.75 7.92 -2.39 -0.02 0.73 16 42 H 0.08 2.73 7.93 -2.39 -0.02 2.71 16 43 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -68.30 368.23 -0.76 -69.07 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -1.16 Total: 30.53 kcal Atomic # 6 Polarization: 39.05 SS G_CDS: 6.87 Total: 45.93 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -9.84 Total: -136.10 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.11 Total: -40.23 kcal Atomic # 9 Polarization: -13.97 SS G_CDS: 1.44 Total: -12.52 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -68.30 -0.76 -69.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484196603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.374 kcal (2) G-P(sol) polarization free energy of solvation -68.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.56 seconds