Wall clock time and date at job start Tue Mar 31 2020 21:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99841 * 2 1 4 4 H 1.48501 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46951 * 299.99617 * 3 2 1 6 6 H 1.48497 * 109.47342 * 60.00080 * 3 2 1 7 7 C 1.38809 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99632 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00509 * 359.72414 * 7 2 1 10 10 C 1.46496 * 120.00085 * 180.27294 * 9 7 2 11 11 C 1.53004 * 109.46985 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47229 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00034 * 93.68082 * 12 11 10 14 14 C 1.53004 * 109.46852 * 84.52081 * 13 12 11 15 15 O 1.42904 * 109.47255 * 64.99582 * 14 13 12 16 16 C 1.34778 * 119.99657 * 273.68578 * 12 11 10 17 17 O 1.21280 * 119.99826 * 185.05461 * 16 12 11 18 18 C 1.50699 * 120.00252 * 5.05160 * 16 12 11 19 19 H 1.09008 * 109.69516 * 42.08221 * 18 16 12 20 20 C 1.53404 * 109.69890 * 281.48658 * 18 16 12 21 21 O 1.42829 * 108.37584 * 175.58910 * 20 18 16 22 22 C 1.35845 * 117.85583 * 49.19620 * 21 20 18 23 23 C 1.39155 * 118.48972 * 163.02979 * 22 21 20 24 24 C 1.37971 * 120.20784 * 179.60158 * 23 22 21 25 25 C 1.38282 * 119.96294 * 359.97438 * 24 23 22 26 26 C 1.38110 * 119.98403 * 0.07261 * 25 24 23 27 27 C 1.38372 * 121.81029 * 342.74177 * 22 21 20 28 28 C 1.50768 * 121.39955 * 0.52335 * 27 22 21 29 29 H 0.96994 * 119.99992 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99507 * 0.27960 * 9 7 2 31 31 H 1.09003 * 109.47502 * 300.00201 * 10 9 7 32 32 H 1.09001 * 109.47449 * 60.00596 * 10 9 7 33 33 H 1.09001 * 109.47468 * 300.00024 * 11 10 9 34 34 H 1.09001 * 109.47075 * 60.00316 * 11 10 9 35 35 H 1.08999 * 109.46723 * 204.51788 * 13 12 11 36 36 H 1.08995 * 109.47155 * 324.52024 * 13 12 11 37 37 H 1.08997 * 109.47249 * 185.00185 * 14 13 12 38 38 H 1.09001 * 109.47111 * 305.00344 * 14 13 12 39 39 H 0.96697 * 113.99978 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.67938 * 295.30272 * 20 18 16 41 41 H 1.08994 * 109.68668 * 55.86424 * 20 18 16 42 42 H 1.07992 * 119.89202 * 359.55274 * 23 22 21 43 43 H 1.07999 * 120.01702 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.01159 * 180.08657 * 25 24 23 45 45 H 1.08000 * 119.84312 * 179.97438 * 26 25 24 46 46 H 1.09007 * 109.43057 * 222.10395 * 28 27 22 47 47 H 1.09004 * 109.40100 * 102.21753 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0068 10 6 2.0581 -3.6567 0.0134 11 6 1.0639 -4.8197 0.0189 12 7 1.7964 -6.0884 0.0261 13 6 2.0912 -6.7568 1.2960 14 6 0.8894 -7.6050 1.7169 15 8 0.6952 -8.6586 0.7712 16 6 2.1991 -6.6406 -1.1355 17 8 2.7238 -7.7340 -1.1374 18 6 1.9972 -5.8995 -2.4321 19 1 2.2429 -4.8463 -2.2953 20 6 0.5377 -6.0363 -2.8841 21 8 0.3528 -5.2411 -4.0560 22 6 1.2510 -5.3802 -5.0656 23 6 0.9089 -4.9061 -6.3284 24 6 1.7976 -5.0216 -7.3775 25 6 3.0326 -5.6096 -7.1748 26 6 3.3751 -6.0821 -5.9231 27 6 2.4864 -5.9708 -4.8666 28 6 2.8946 -6.5021 -3.5159 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0067 31 1 2.6848 -3.7192 -0.8763 32 1 2.6848 -3.7099 0.9037 33 1 0.4369 -4.7575 0.9083 34 1 0.4376 -4.7664 -0.8716 35 1 2.9640 -7.3983 1.1747 36 1 2.2939 -6.0084 2.0620 37 1 1.0730 -8.0312 2.7031 38 1 -0.0025 -6.9793 1.7518 39 1 -0.0520 -9.2374 0.9752 40 1 0.3198 -7.0800 -3.1105 41 1 -0.1259 -5.6852 -2.0938 42 1 -0.0555 -4.4471 -6.4879 43 1 1.5290 -4.6523 -8.3562 44 1 3.7294 -5.6992 -7.9951 45 1 4.3401 -6.5413 -5.7675 46 1 3.9323 -6.2328 -3.3188 47 1 2.7938 -7.5875 -3.5083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484487332.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:43 Heat of formation + Delta-G solvation = -78.428161 kcal Electronic energy + Delta-G solvation = -29659.633143 eV Core-core repulsion = 25615.204420 eV Total energy + Delta-G solvation = -4044.428723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.40 seconds Orbital eigenvalues (eV) -41.05014 -39.65468 -37.46244 -37.01521 -36.01774 -34.30616 -34.08024 -31.54375 -30.98899 -30.24505 -29.38280 -27.49701 -25.83641 -24.69974 -23.81944 -22.76237 -22.42004 -21.73789 -20.18530 -18.91638 -17.86683 -17.76458 -17.33398 -17.10210 -16.48645 -16.11021 -15.54010 -15.26288 -14.87178 -14.60926 -14.58722 -14.12853 -14.02654 -13.88599 -13.72013 -13.37018 -13.31173 -13.19307 -13.04379 -12.97993 -12.67593 -12.16688 -11.83350 -11.61891 -11.40570 -11.34220 -11.29515 -11.05826 -10.93585 -10.88694 -10.66686 -10.53798 -10.13966 -10.11159 -9.81601 -9.59240 -8.94812 -8.79065 -8.55550 -8.14558 -7.01855 -5.82809 -3.12880 1.30143 1.42678 2.68237 2.95667 3.30290 3.40528 3.46798 3.48542 3.74607 4.17070 4.38724 4.53742 4.59552 4.62776 4.82789 4.90120 5.04516 5.05310 5.06560 5.11057 5.15170 5.23989 5.34278 5.42253 5.44436 5.49761 5.52386 5.54741 5.61673 5.64892 5.82399 5.86132 5.92461 5.94543 6.03677 6.08221 6.27477 6.40949 6.44865 6.50275 6.59325 6.74366 6.76194 7.42811 7.47241 7.56396 7.65494 8.27524 8.35115 9.46851 10.00151 10.35027 11.39790 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007053 B = 0.004609 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3969.246352 B = 6073.513784 C = 9129.012878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.138 3.862 11 C 0.092 3.908 12 N -0.602 5.602 13 C 0.114 3.886 14 C 0.059 3.941 15 O -0.557 6.557 16 C 0.533 3.467 17 O -0.526 6.526 18 C -0.154 4.154 19 H 0.119 0.881 20 C 0.077 3.923 21 O -0.305 6.305 22 C 0.133 3.867 23 C -0.147 4.147 24 C -0.091 4.091 25 C -0.155 4.155 26 C -0.084 4.084 27 C -0.154 4.154 28 C -0.059 4.059 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.371 0.629 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.084 0.916 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -16.794 -5.890 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.009 3.991 11 C -0.031 4.031 12 N -0.335 5.335 13 C -0.009 4.009 14 C -0.020 4.020 15 O -0.361 6.361 16 C 0.320 3.680 17 O -0.401 6.401 18 C -0.175 4.175 19 H 0.137 0.863 20 C 0.001 3.999 21 O -0.218 6.218 22 C 0.088 3.912 23 C -0.165 4.165 24 C -0.109 4.109 25 C -0.173 4.173 26 C -0.102 4.102 27 C -0.155 4.155 28 C -0.096 4.096 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.217 0.783 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.103 0.897 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.955 -16.857 -6.139 18.046 hybrid contribution -0.242 0.844 0.572 1.048 sum 1.714 -16.013 -5.567 17.039 Atomic orbital electron populations 1.69660 1.05103 1.25700 1.57465 1.24733 0.95527 0.97705 1.02648 0.86122 0.78829 0.84018 0.77247 1.20533 1.21729 1.21800 1.19216 0.91035 0.83878 1.43126 0.91135 1.42204 1.05824 0.99685 1.89708 1.21030 0.93834 0.85744 0.98467 1.22043 0.95024 0.82385 1.03669 1.47768 1.57042 1.22925 1.05805 1.21530 0.97846 0.95749 0.85734 1.22618 0.98433 0.89377 0.91558 1.86687 1.54263 1.43749 1.51437 1.20040 0.77949 0.85399 0.84648 1.90674 1.43075 1.19762 1.86633 1.22135 0.98065 1.03460 0.93863 0.86328 1.22942 0.94962 0.95684 0.86292 1.86080 1.48804 1.62064 1.24848 1.18768 0.88262 0.96233 0.87982 1.20616 1.01390 1.04460 0.90079 1.20901 0.93526 0.98183 0.98296 1.20983 0.97332 1.01790 0.97195 1.20869 0.98699 0.98576 0.92095 1.19842 0.94221 1.04770 0.96692 1.20318 0.99434 1.01196 0.88677 0.93456 0.78193 0.96113 0.95904 0.89834 0.89978 0.89070 0.88888 0.93016 0.93447 0.78327 0.91206 0.86762 0.85161 0.85568 0.86029 0.85852 0.89728 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -17.58 5.60 -59.91 -0.34 -17.91 16 10 C 0.14 2.61 6.41 -4.04 -0.03 2.58 16 11 C 0.09 1.35 5.19 -4.04 -0.02 1.33 16 12 N -0.60 -8.35 2.44 -173.68 -0.42 -8.77 16 13 C 0.11 1.38 5.82 -4.04 -0.02 1.35 16 14 C 0.06 0.60 7.39 37.16 0.27 0.88 16 15 O -0.56 -6.56 12.90 -35.43 -0.46 -7.02 16 16 C 0.53 8.08 6.64 -10.99 -0.07 8.01 16 17 O -0.53 -9.21 14.83 5.36 0.08 -9.13 16 18 C -0.15 -2.21 1.92 -91.53 -0.18 -2.39 16 19 H 0.12 1.90 5.75 -51.92 -0.30 1.60 16 20 C 0.08 1.04 6.01 37.37 0.22 1.27 16 21 O -0.30 -4.71 10.27 -19.25 -0.20 -4.90 16 22 C 0.13 1.96 6.47 -39.19 -0.25 1.70 16 23 C -0.15 -1.93 9.94 -39.34 -0.39 -2.32 16 24 C -0.09 -1.02 10.04 -39.66 -0.40 -1.41 16 25 C -0.15 -1.69 10.04 -39.61 -0.40 -2.09 16 26 C -0.08 -1.01 9.67 -39.53 -0.38 -1.39 16 27 C -0.15 -2.12 5.75 -104.44 -0.60 -2.72 16 28 C -0.06 -0.80 4.86 -27.81 -0.14 -0.94 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.38 9.63 7.67 -40.82 -0.31 9.32 16 31 H 0.02 0.42 6.38 -51.93 -0.33 0.08 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 34 H 0.08 1.20 4.66 -51.93 -0.24 0.96 16 35 H 0.09 1.21 7.33 -51.93 -0.38 0.83 16 36 H 0.09 0.98 8.11 -51.93 -0.42 0.55 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.37 2.65 9.12 45.56 0.42 3.07 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.11 1.46 5.80 -51.93 -0.30 1.16 16 42 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.09 1.26 7.46 -51.93 -0.39 0.88 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -34.04 381.01 -8.55 -42.58 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.03 Total: 12.30 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.62 Total: -3.25 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.03 Total: -53.42 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.58 Total: -21.06 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.04 -8.55 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484487332.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.848 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.40 seconds