Wall clock time and date at job start Tue Mar 31 2020 21:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99841 * 2 1 4 4 H 1.48501 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46951 * 299.99617 * 3 2 1 6 6 H 1.48497 * 109.47342 * 60.00080 * 3 2 1 7 7 C 1.38809 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99632 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00509 * 359.72414 * 7 2 1 10 10 C 1.46496 * 120.00085 * 180.27294 * 9 7 2 11 11 C 1.53004 * 109.46985 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47229 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00034 * 93.68082 * 12 11 10 14 14 C 1.53004 * 109.46852 * 84.52081 * 13 12 11 15 15 O 1.42904 * 109.47255 * 64.99582 * 14 13 12 16 16 C 1.34778 * 119.99657 * 273.68578 * 12 11 10 17 17 O 1.21280 * 119.99826 * 185.05461 * 16 12 11 18 18 C 1.50699 * 120.00252 * 5.05160 * 16 12 11 19 19 H 1.09008 * 109.69516 * 42.08221 * 18 16 12 20 20 C 1.53404 * 109.69890 * 281.48658 * 18 16 12 21 21 O 1.42829 * 108.37584 * 175.58910 * 20 18 16 22 22 C 1.35845 * 117.85583 * 49.19620 * 21 20 18 23 23 C 1.39155 * 118.48972 * 163.02979 * 22 21 20 24 24 C 1.37971 * 120.20784 * 179.60158 * 23 22 21 25 25 C 1.38282 * 119.96294 * 359.97438 * 24 23 22 26 26 C 1.38110 * 119.98403 * 0.07261 * 25 24 23 27 27 C 1.38372 * 121.81029 * 342.74177 * 22 21 20 28 28 C 1.50768 * 121.39955 * 0.52335 * 27 22 21 29 29 H 0.96994 * 119.99992 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99507 * 0.27960 * 9 7 2 31 31 H 1.09003 * 109.47502 * 300.00201 * 10 9 7 32 32 H 1.09001 * 109.47449 * 60.00596 * 10 9 7 33 33 H 1.09001 * 109.47468 * 300.00024 * 11 10 9 34 34 H 1.09001 * 109.47075 * 60.00316 * 11 10 9 35 35 H 1.08999 * 109.46723 * 204.51788 * 13 12 11 36 36 H 1.08995 * 109.47155 * 324.52024 * 13 12 11 37 37 H 1.08997 * 109.47249 * 185.00185 * 14 13 12 38 38 H 1.09001 * 109.47111 * 305.00344 * 14 13 12 39 39 H 0.96697 * 113.99978 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.67938 * 295.30272 * 20 18 16 41 41 H 1.08994 * 109.68668 * 55.86424 * 20 18 16 42 42 H 1.07992 * 119.89202 * 359.55274 * 23 22 21 43 43 H 1.07999 * 120.01702 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.01159 * 180.08657 * 25 24 23 45 45 H 1.08000 * 119.84312 * 179.97438 * 26 25 24 46 46 H 1.09007 * 109.43057 * 222.10395 * 28 27 22 47 47 H 1.09004 * 109.40100 * 102.21753 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0068 10 6 2.0581 -3.6567 0.0134 11 6 1.0639 -4.8197 0.0189 12 7 1.7964 -6.0884 0.0261 13 6 2.0912 -6.7568 1.2960 14 6 0.8894 -7.6050 1.7169 15 8 0.6952 -8.6586 0.7712 16 6 2.1991 -6.6406 -1.1355 17 8 2.7238 -7.7340 -1.1374 18 6 1.9972 -5.8995 -2.4321 19 1 2.2429 -4.8463 -2.2953 20 6 0.5377 -6.0363 -2.8841 21 8 0.3528 -5.2411 -4.0560 22 6 1.2510 -5.3802 -5.0656 23 6 0.9089 -4.9061 -6.3284 24 6 1.7976 -5.0216 -7.3775 25 6 3.0326 -5.6096 -7.1748 26 6 3.3751 -6.0821 -5.9231 27 6 2.4864 -5.9708 -4.8666 28 6 2.8946 -6.5021 -3.5159 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0067 31 1 2.6848 -3.7192 -0.8763 32 1 2.6848 -3.7099 0.9037 33 1 0.4369 -4.7575 0.9083 34 1 0.4376 -4.7664 -0.8716 35 1 2.9640 -7.3983 1.1747 36 1 2.2939 -6.0084 2.0620 37 1 1.0730 -8.0312 2.7031 38 1 -0.0025 -6.9793 1.7518 39 1 -0.0520 -9.2374 0.9752 40 1 0.3198 -7.0800 -3.1105 41 1 -0.1259 -5.6852 -2.0938 42 1 -0.0555 -4.4471 -6.4879 43 1 1.5290 -4.6523 -8.3562 44 1 3.7294 -5.6992 -7.9951 45 1 4.3401 -6.5413 -5.7675 46 1 3.9323 -6.2328 -3.3188 47 1 2.7938 -7.5875 -3.5083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484487332.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:41 Heat of formation + Delta-G solvation = -102.268939 kcal Electronic energy + Delta-G solvation = -29660.666957 eV Core-core repulsion = 25615.204420 eV Total energy + Delta-G solvation = -4045.462537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.14936 -40.77008 -38.44374 -38.04649 -37.33647 -35.84945 -35.27913 -33.28105 -32.12527 -31.20675 -30.53152 -28.99584 -26.88875 -25.92899 -25.46308 -23.76995 -23.50740 -23.16932 -21.24126 -20.16502 -19.22045 -18.88330 -18.57475 -18.27587 -17.66530 -17.25281 -16.68511 -16.46384 -16.30117 -15.86736 -15.69392 -15.33162 -15.25411 -15.13678 -14.99562 -14.85830 -14.62962 -14.25070 -14.17789 -14.13215 -13.75402 -13.31626 -13.03942 -12.89231 -12.86812 -12.75439 -12.47012 -12.42581 -12.29202 -12.13260 -12.06391 -11.84825 -11.81224 -11.61648 -11.00927 -10.94731 -10.74086 -9.76188 -9.73513 -9.15135 -9.03088 -7.96405 -5.25726 0.35258 0.46249 1.46810 1.47828 1.48762 1.57882 1.81932 2.25549 2.56059 2.79224 3.20463 3.37923 3.42533 3.51107 3.53443 3.81088 3.88119 3.90331 4.01069 4.09466 4.18647 4.24916 4.27018 4.28089 4.32833 4.34883 4.46393 4.53483 4.57101 4.63285 4.66977 4.68550 4.83795 4.88169 4.90583 4.99804 5.08725 5.10777 5.34091 5.47221 5.50748 5.53178 5.58621 5.86073 6.23329 6.28192 6.41007 6.95714 7.07873 7.33215 8.04078 8.28975 9.26644 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007053 B = 0.004609 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3969.246352 B = 6073.513784 C = 9129.012878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.738 5.738 10 C 0.141 3.859 11 C 0.108 3.892 12 N -0.596 5.596 13 C 0.106 3.894 14 C 0.062 3.938 15 O -0.585 6.585 16 C 0.534 3.466 17 O -0.550 6.550 18 C -0.148 4.148 19 H 0.100 0.900 20 C 0.079 3.921 21 O -0.324 6.324 22 C 0.102 3.898 23 C -0.164 4.164 24 C -0.088 4.088 25 C -0.151 4.151 26 C -0.091 4.091 27 C -0.171 4.171 28 C -0.053 4.053 29 H 0.252 0.748 30 H 0.378 0.622 31 H 0.013 0.987 32 H 0.025 0.975 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.389 0.611 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.134 0.866 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.143 0.857 46 H 0.085 0.915 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 -17.194 -6.365 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.013 3.987 11 C -0.016 4.016 12 N -0.328 5.328 13 C -0.016 4.016 14 C -0.016 4.016 15 O -0.392 6.392 16 C 0.322 3.678 17 O -0.427 6.427 18 C -0.170 4.170 19 H 0.118 0.882 20 C 0.004 3.996 21 O -0.238 6.238 22 C 0.058 3.942 23 C -0.182 4.182 24 C -0.106 4.106 25 C -0.169 4.169 26 C -0.109 4.109 27 C -0.171 4.171 28 C -0.090 4.090 29 H 0.061 0.939 30 H 0.210 0.790 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.238 0.762 40 H 0.094 0.906 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.174 0.826 44 H 0.171 0.829 45 H 0.160 0.840 46 H 0.104 0.896 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.702 -17.293 -6.594 18.704 hybrid contribution -0.410 0.901 0.671 1.196 sum 2.291 -16.393 -5.923 17.580 Atomic orbital electron populations 1.69791 1.06395 1.26103 1.59087 1.25472 0.96345 1.00773 1.03349 0.85161 0.78206 0.80146 0.76770 1.19374 1.22088 1.21742 1.19549 0.91314 0.85207 1.41693 0.91070 1.42324 1.05704 1.00662 1.89536 1.21108 0.94393 0.85263 0.97909 1.21805 0.93923 0.81209 1.04618 1.47763 1.56441 1.22307 1.06339 1.21779 0.98469 0.96290 0.85101 1.22622 0.97648 0.89122 0.92243 1.86635 1.55581 1.44531 1.52429 1.20132 0.77503 0.85074 0.85115 1.90660 1.44283 1.20820 1.86976 1.22039 0.98847 1.02106 0.93967 0.88183 1.22961 0.94530 0.95930 0.86171 1.86036 1.49528 1.62749 1.25457 1.19111 0.88824 0.97851 0.88450 1.20892 1.02289 1.04839 0.90196 1.21302 0.93144 0.97206 0.98957 1.21400 0.97647 1.00273 0.97569 1.21193 0.99157 0.98443 0.92130 1.19962 0.94516 1.05482 0.97189 1.20246 0.99258 1.00788 0.88730 0.93869 0.78957 0.96876 0.95667 0.88126 0.89853 0.90445 0.87214 0.90474 0.92658 0.76191 0.90631 0.86209 0.84773 0.82585 0.82910 0.83970 0.89633 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.24 13.06 21.65 0.28 -56.96 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 7 C -0.25 -13.41 9.99 84.03 0.84 -12.57 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -35.63 5.60 -343.45 -1.92 -37.56 16 10 C 0.14 5.29 6.41 86.38 0.55 5.84 16 11 C 0.11 3.09 5.19 86.38 0.45 3.54 16 12 N -0.60 -16.13 2.44 -821.79 -2.00 -18.13 16 13 C 0.11 2.41 5.82 86.38 0.50 2.91 16 14 C 0.06 1.14 7.39 71.98 0.53 1.67 16 15 O -0.58 -12.99 12.90 -148.79 -1.92 -14.91 16 16 C 0.53 16.22 6.64 87.66 0.58 16.80 16 17 O -0.55 -19.31 14.83 -2.84 -0.04 -19.35 16 18 C -0.15 -4.34 1.92 -11.38 -0.02 -4.36 16 19 H 0.10 3.31 5.75 -2.38 -0.01 3.29 16 20 C 0.08 2.21 6.01 72.12 0.43 2.64 16 21 O -0.32 -10.30 10.27 -91.81 -0.94 -11.24 16 22 C 0.10 3.05 6.47 22.52 0.15 3.20 16 23 C -0.16 -4.23 9.94 22.43 0.22 -4.01 16 24 C -0.09 -1.79 10.04 22.22 0.22 -1.57 16 25 C -0.15 -2.92 10.04 22.25 0.22 -2.70 16 26 C -0.09 -2.06 9.67 22.30 0.22 -1.84 16 27 C -0.17 -4.69 5.75 -19.75 -0.11 -4.80 16 28 C -0.05 -1.46 4.86 29.89 0.15 -1.31 16 29 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.38 19.06 7.67 -92.71 -0.71 18.34 16 31 H 0.01 0.53 6.38 -2.39 -0.02 0.51 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 2.60 8.04 -2.39 -0.02 2.58 16 34 H 0.08 2.42 4.66 -2.39 -0.01 2.41 16 35 H 0.08 2.01 7.33 -2.39 -0.02 1.99 16 36 H 0.11 2.10 8.11 -2.39 -0.02 2.08 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.39 4.99 9.12 -74.06 -0.68 4.32 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.12 3.10 5.80 -2.39 -0.01 3.08 16 42 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 44 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 46 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.09 2.45 7.46 -2.39 -0.02 2.43 16 Total: -1.00 -72.79 381.01 0.50 -72.29 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.38 Total: 38.21 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 5.40 Total: 0.18 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -3.64 Total: -112.65 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -2.90 Total: -45.50 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.79 0.50 -72.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484487332.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.982 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds