Wall clock time and date at job start Tue Mar 31 2020 21:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48505 * 109.46856 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47125 * 299.99778 * 3 2 1 6 6 H 1.48495 * 109.47300 * 60.00026 * 3 2 1 7 7 C 1.38809 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99965 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.01904 * 33.61080 * 10 9 7 12 12 C 1.54266 * 110.07363 * 272.19066 * 10 9 7 13 13 C 1.54895 * 104.19656 * 264.30612 * 12 10 9 14 14 C 1.54885 * 102.74567 * 322.05617 * 13 12 10 15 15 H 1.09002 * 110.60321 * 279.20769 * 14 13 12 16 16 C 1.53002 * 110.48643 * 156.62123 * 14 13 12 17 17 N 1.46502 * 109.47230 * 70.22501 * 16 14 13 18 18 C 1.34767 * 120.00415 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99723 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00535 * 179.97438 * 18 17 16 21 21 C 1.53006 * 112.84738 * 309.66981 * 20 18 17 22 22 F 1.39900 * 109.46764 * 288.79935 * 21 20 18 23 23 F 1.39897 * 109.47129 * 48.79913 * 21 20 18 24 24 F 1.39903 * 109.46814 * 168.80406 * 21 20 18 25 25 C 1.53781 * 113.69265 * 80.93175 * 20 18 17 26 26 C 1.53778 * 87.08024 * 89.13208 * 25 20 18 27 27 C 1.53777 * 113.61747 * 178.47053 * 20 18 17 28 28 C 1.53878 * 110.03256 * 155.00274 * 10 9 7 29 29 H 0.97001 * 120.00152 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99991 * 359.97438 * 9 7 2 31 31 H 1.09003 * 110.48642 * 22.98403 * 12 10 9 32 32 H 1.08999 * 110.48965 * 145.49112 * 12 10 9 33 33 H 1.09003 * 110.75527 * 203.74173 * 13 12 10 34 34 H 1.08991 * 110.75708 * 80.36818 * 13 12 10 35 35 H 1.08999 * 109.47295 * 310.22679 * 16 14 13 36 36 H 1.08999 * 109.46870 * 190.22273 * 16 14 13 37 37 H 0.97001 * 119.99640 * 0.02562 * 17 16 14 38 38 H 1.08998 * 113.61551 * 203.67756 * 25 20 18 39 39 H 1.09005 * 113.61464 * 334.58337 * 25 20 18 40 40 H 1.09008 * 113.61459 * 270.88822 * 26 25 20 41 41 H 1.09004 * 113.61874 * 139.98602 * 26 25 20 42 42 H 1.08997 * 113.61379 * 25.34640 * 27 20 18 43 43 H 1.09005 * 113.61585 * 156.24833 * 27 20 18 44 44 H 1.08996 * 110.02753 * 0.04236 * 28 10 9 45 45 H 1.09002 * 110.02695 * 238.61783 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9832 -3.5535 0.5674 12 6 2.3707 -4.0877 -1.4474 13 6 1.2228 -5.0625 -1.8099 14 6 1.0005 -5.8359 -0.4865 15 1 1.7401 -6.6290 -0.3768 16 6 -0.4149 -6.4148 -0.4359 17 7 -0.5309 -7.5066 -1.4057 18 6 -1.6969 -8.1694 -1.5381 19 8 -2.6500 -7.8621 -0.8539 20 6 -1.8165 -9.2921 -2.5361 21 6 -1.3221 -8.9025 -3.9307 22 9 -2.2256 -8.0065 -4.5123 23 9 -0.0654 -8.2965 -3.8275 24 9 -1.2234 -10.0483 -4.7274 25 6 -1.2485 -10.6295 -2.0327 26 6 -2.6466 -10.9180 -1.4609 27 6 -3.1970 -9.9695 -2.5389 28 6 1.1868 -4.7684 0.6114 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.3623 -3.2242 -2.1126 32 1 3.3342 -4.5951 -1.4948 33 1 1.5289 -5.7404 -2.6068 34 1 0.3245 -4.5136 -2.0921 35 1 -1.1356 -5.6342 -0.6796 36 1 -0.6161 -6.7954 0.5655 37 1 0.2315 -7.7526 -1.9527 38 1 -0.9556 -11.3086 -2.8334 39 1 -0.4790 -10.5173 -1.2688 40 1 -2.7867 -10.5513 -0.4440 41 1 -2.9646 -11.9531 -1.5863 42 1 -4.0006 -9.3243 -2.1838 43 1 -3.4369 -10.4681 -3.4781 44 1 0.2188 -4.3640 0.9072 45 1 1.6893 -5.2045 1.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488917625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:01 Heat of formation + Delta-G solvation = -166.937413 kcal Electronic energy + Delta-G solvation = -30087.243716 eV Core-core repulsion = 25497.120203 eV Total energy + Delta-G solvation = -4590.123513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 10.34 seconds Orbital eigenvalues (eV) -50.55229 -48.09562 -47.96302 -40.95324 -38.59094 -37.57231 -35.02699 -33.32437 -30.84289 -29.59958 -28.70055 -27.29476 -26.34408 -24.89580 -23.70035 -23.14945 -21.95386 -20.35879 -19.60785 -19.22031 -18.78432 -18.75647 -18.47406 -17.10069 -16.72170 -16.31306 -15.66532 -15.31150 -14.98586 -14.89862 -14.80652 -14.58011 -14.45648 -14.31828 -14.15246 -14.04441 -13.74258 -13.50853 -13.23762 -13.14796 -12.93044 -12.73634 -12.63227 -12.21521 -11.50215 -11.41429 -11.20120 -11.16384 -11.08640 -10.84368 -10.75203 -10.58912 -10.50121 -10.28104 -10.23535 -10.11096 -9.88389 -9.61679 -9.22107 -8.87327 -6.92097 -5.74871 -3.03185 1.89751 2.46618 2.69336 3.21596 3.42111 3.44028 3.49626 3.51935 3.56243 3.97836 4.14603 4.19046 4.30881 4.60314 4.75739 4.86852 4.94064 5.04504 5.09009 5.11159 5.31526 5.41279 5.53135 5.54250 5.56129 5.70300 5.70785 5.79161 5.90899 5.99255 6.06140 6.11369 6.19598 6.29534 6.34871 6.47404 6.66286 6.76094 6.91811 7.10958 7.21976 7.73082 7.86600 8.44414 9.55033 10.14603 10.48450 11.47828 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.002510 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.006532 B =11154.459112 C =11342.385187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.103 4.103 15 H 0.075 0.925 16 C 0.124 3.876 17 N -0.717 5.717 18 C 0.538 3.462 19 O -0.515 6.515 20 C -0.170 4.170 21 C 0.470 3.530 22 F -0.172 7.172 23 F -0.177 7.177 24 F -0.174 7.174 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.108 4.108 28 C -0.121 4.121 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.404 0.596 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -26.719 -6.264 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.122 4.122 15 H 0.093 0.907 16 C 0.002 3.998 17 N -0.371 5.371 18 C 0.321 3.679 19 O -0.390 6.390 20 C -0.175 4.175 21 C 0.415 3.585 22 F -0.153 7.153 23 F -0.158 7.158 24 F -0.156 7.156 25 C -0.154 4.154 26 C -0.170 4.170 27 C -0.145 4.145 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.242 0.758 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.091 0.909 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.964 -26.300 -5.766 27.087 hybrid contribution 0.701 1.036 -0.720 1.444 sum -2.263 -25.264 -6.486 26.181 Atomic orbital electron populations 1.69673 1.05082 1.25498 1.57833 1.24742 0.95499 0.97668 1.03154 0.86143 0.78771 0.84285 0.77159 1.20600 1.21935 1.21923 1.19301 0.91024 0.84208 1.42375 0.91178 1.42557 1.05673 0.99723 1.88256 1.20796 0.94116 0.86063 0.92611 0.93353 1.23119 0.96001 0.98633 1.00898 1.22508 1.00053 0.97440 0.95123 1.22242 0.94406 0.97870 0.97729 0.90669 1.21637 0.98066 0.88371 0.91734 1.46287 1.13530 1.35521 1.41764 1.19077 0.83601 0.81832 0.83424 1.90748 1.37489 1.65515 1.45268 1.23682 1.04712 0.98452 0.90663 1.20037 0.75407 0.74853 0.88193 1.93240 1.67176 1.68708 1.86211 1.93083 1.42992 1.83929 1.95845 1.93174 1.95989 1.50160 1.76254 1.23048 0.99081 0.91343 1.01891 1.22809 0.94270 1.00410 0.99473 1.22892 0.93159 0.97603 1.00894 1.22466 1.01516 0.95383 0.96588 0.93587 0.78263 0.90942 0.93299 0.92915 0.91270 0.90588 0.91221 0.75772 0.87465 0.89419 0.88825 0.89789 0.88207 0.88255 0.90854 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.57 9.96 -15.06 -0.15 -6.72 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.72 -17.85 5.08 -52.34 -0.27 -18.12 16 10 C 0.17 3.37 3.55 -66.81 -0.24 3.13 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.15 -2.52 6.54 -25.07 -0.16 -2.68 16 13 C -0.11 -1.67 6.19 -24.74 -0.15 -1.83 16 14 C -0.10 -1.34 2.89 -88.96 -0.26 -1.59 16 15 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 16 C 0.12 1.60 4.96 -4.04 -0.02 1.58 16 17 N -0.72 -8.11 5.13 -60.30 -0.31 -8.42 16 18 C 0.54 6.46 6.63 -10.99 -0.07 6.38 16 19 O -0.51 -7.85 15.83 5.56 0.09 -7.76 16 20 C -0.17 -1.53 0.87 -154.85 -0.14 -1.66 16 21 C 0.47 4.52 2.66 37.16 0.10 4.62 16 22 F -0.17 -1.99 17.17 2.25 0.04 -1.95 16 23 F -0.18 -1.76 14.49 2.25 0.03 -1.72 16 24 F -0.17 -1.50 15.75 2.25 0.04 -1.46 16 25 C -0.12 -0.72 7.10 -25.92 -0.18 -0.91 16 26 C -0.13 -0.84 7.75 -25.92 -0.20 -1.04 16 27 C -0.11 -0.83 6.81 -25.92 -0.18 -1.01 16 28 C -0.12 -1.89 6.14 -25.61 -0.16 -2.04 16 29 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.38 10.15 7.52 -40.82 -0.31 9.84 16 31 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 35 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 3.96 6.02 -40.82 -0.25 3.72 16 38 H 0.11 0.52 7.13 -51.93 -0.37 0.15 16 39 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 40 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.93 7.41 -51.93 -0.38 0.54 16 43 H 0.10 0.60 7.88 -51.93 -0.41 0.20 16 44 H 0.07 1.26 7.31 -51.93 -0.38 0.88 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -31.54 371.54 -7.68 -39.21 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.69 Total: 9.04 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.91 Total: -4.29 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.15 Total: -54.13 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.09 Total: -7.76 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.54 -7.68 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488917625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.726 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.35 seconds