Wall clock time and date at job start Tue Mar 31 2020 21:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48505 * 109.46856 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47125 * 299.99778 * 3 2 1 6 6 H 1.48495 * 109.47300 * 60.00026 * 3 2 1 7 7 C 1.38809 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99965 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.01904 * 33.61080 * 10 9 7 12 12 C 1.54266 * 110.07363 * 272.19066 * 10 9 7 13 13 C 1.54895 * 104.19656 * 264.30612 * 12 10 9 14 14 C 1.54885 * 102.74567 * 322.05617 * 13 12 10 15 15 H 1.09002 * 110.60321 * 279.20769 * 14 13 12 16 16 C 1.53002 * 110.48643 * 156.62123 * 14 13 12 17 17 N 1.46502 * 109.47230 * 70.22501 * 16 14 13 18 18 C 1.34767 * 120.00415 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99723 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00535 * 179.97438 * 18 17 16 21 21 C 1.53006 * 112.84738 * 309.66981 * 20 18 17 22 22 F 1.39900 * 109.46764 * 288.79935 * 21 20 18 23 23 F 1.39897 * 109.47129 * 48.79913 * 21 20 18 24 24 F 1.39903 * 109.46814 * 168.80406 * 21 20 18 25 25 C 1.53781 * 113.69265 * 80.93175 * 20 18 17 26 26 C 1.53778 * 87.08024 * 89.13208 * 25 20 18 27 27 C 1.53777 * 113.61747 * 178.47053 * 20 18 17 28 28 C 1.53878 * 110.03256 * 155.00274 * 10 9 7 29 29 H 0.97001 * 120.00152 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99991 * 359.97438 * 9 7 2 31 31 H 1.09003 * 110.48642 * 22.98403 * 12 10 9 32 32 H 1.08999 * 110.48965 * 145.49112 * 12 10 9 33 33 H 1.09003 * 110.75527 * 203.74173 * 13 12 10 34 34 H 1.08991 * 110.75708 * 80.36818 * 13 12 10 35 35 H 1.08999 * 109.47295 * 310.22679 * 16 14 13 36 36 H 1.08999 * 109.46870 * 190.22273 * 16 14 13 37 37 H 0.97001 * 119.99640 * 0.02562 * 17 16 14 38 38 H 1.08998 * 113.61551 * 203.67756 * 25 20 18 39 39 H 1.09005 * 113.61464 * 334.58337 * 25 20 18 40 40 H 1.09008 * 113.61459 * 270.88822 * 26 25 20 41 41 H 1.09004 * 113.61874 * 139.98602 * 26 25 20 42 42 H 1.08997 * 113.61379 * 25.34640 * 27 20 18 43 43 H 1.09005 * 113.61585 * 156.24833 * 27 20 18 44 44 H 1.08996 * 110.02753 * 0.04236 * 28 10 9 45 45 H 1.09002 * 110.02695 * 238.61783 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9832 -3.5535 0.5674 12 6 2.3707 -4.0877 -1.4474 13 6 1.2228 -5.0625 -1.8099 14 6 1.0005 -5.8359 -0.4865 15 1 1.7401 -6.6290 -0.3768 16 6 -0.4149 -6.4148 -0.4359 17 7 -0.5309 -7.5066 -1.4057 18 6 -1.6969 -8.1694 -1.5381 19 8 -2.6500 -7.8621 -0.8539 20 6 -1.8165 -9.2921 -2.5361 21 6 -1.3221 -8.9025 -3.9307 22 9 -2.2256 -8.0065 -4.5123 23 9 -0.0654 -8.2965 -3.8275 24 9 -1.2234 -10.0483 -4.7274 25 6 -1.2485 -10.6295 -2.0327 26 6 -2.6466 -10.9180 -1.4609 27 6 -3.1970 -9.9695 -2.5389 28 6 1.1868 -4.7684 0.6114 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.3623 -3.2242 -2.1126 32 1 3.3342 -4.5951 -1.4948 33 1 1.5289 -5.7404 -2.6068 34 1 0.3245 -4.5136 -2.0921 35 1 -1.1356 -5.6342 -0.6796 36 1 -0.6161 -6.7954 0.5655 37 1 0.2315 -7.7526 -1.9527 38 1 -0.9556 -11.3086 -2.8334 39 1 -0.4790 -10.5173 -1.2688 40 1 -2.7867 -10.5513 -0.4440 41 1 -2.9646 -11.9531 -1.5863 42 1 -4.0006 -9.3243 -2.1838 43 1 -3.4369 -10.4681 -3.4781 44 1 0.2188 -4.3640 0.9072 45 1 1.6893 -5.2045 1.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488917625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:00 Heat of formation + Delta-G solvation = -186.372716 kcal Electronic energy + Delta-G solvation = -30088.086494 eV Core-core repulsion = 25497.120203 eV Total energy + Delta-G solvation = -4590.966291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 19.35 seconds Orbital eigenvalues (eV) -51.31453 -48.83917 -48.75920 -41.78176 -39.77340 -38.52601 -36.35658 -35.02953 -32.57954 -30.74856 -29.72284 -28.75878 -26.90944 -26.12067 -25.17773 -24.41675 -22.79242 -21.39704 -20.83634 -20.40142 -19.58399 -19.53376 -19.30746 -19.08305 -17.57034 -17.30036 -16.70133 -16.64748 -16.14973 -16.04045 -15.68010 -15.57122 -15.35508 -15.23792 -15.17843 -15.05615 -14.92104 -14.80629 -14.45439 -14.24906 -13.95739 -13.58876 -13.45514 -13.37485 -13.12340 -12.99228 -12.51257 -12.35728 -12.11940 -12.09702 -11.96356 -11.78792 -11.73445 -11.65407 -11.63226 -11.51406 -11.43619 -11.08137 -10.90982 -10.24689 -8.96733 -7.93614 -5.21083 1.04422 1.46051 1.46652 1.56626 1.66610 1.81722 2.50763 2.56423 2.68304 2.85510 3.31188 3.38394 3.43794 3.53006 3.64542 3.67100 3.77573 3.83654 4.18301 4.24115 4.40106 4.51498 4.56255 4.56711 4.64949 4.67052 4.76773 4.79978 4.82729 4.89226 4.90778 5.01002 5.05756 5.11775 5.20836 5.23545 5.28430 5.43503 5.49617 5.56859 5.65150 6.29725 6.30179 6.95305 7.34592 8.14825 8.35359 9.30355 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.002510 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.006532 B =11154.459112 C =11342.385187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.162 3.838 11 H 0.047 0.953 12 C -0.139 4.139 13 C -0.108 4.108 14 C -0.085 4.085 15 H 0.112 0.888 16 C 0.131 3.869 17 N -0.709 5.709 18 C 0.535 3.465 19 O -0.554 6.554 20 C -0.174 4.174 21 C 0.470 3.530 22 F -0.188 7.188 23 F -0.179 7.179 24 F -0.165 7.165 25 C -0.104 4.104 26 C -0.127 4.127 27 C -0.111 4.111 28 C -0.115 4.115 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.414 0.586 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.119 0.881 44 H 0.051 0.949 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 -29.512 -6.711 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.053 3.947 11 H 0.065 0.935 12 C -0.179 4.179 13 C -0.146 4.146 14 C -0.103 4.103 15 H 0.130 0.870 16 C 0.008 3.992 17 N -0.363 5.363 18 C 0.319 3.681 19 O -0.432 6.432 20 C -0.179 4.179 21 C 0.416 3.584 22 F -0.169 7.169 23 F -0.160 7.160 24 F -0.146 7.146 25 C -0.141 4.141 26 C -0.164 4.164 27 C -0.149 4.149 28 C -0.154 4.154 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.147 0.853 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.137 0.863 44 H 0.070 0.930 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.004 -29.146 -6.231 29.821 hybrid contribution 0.138 1.846 -0.599 1.945 sum -0.866 -27.300 -6.829 28.155 Atomic orbital electron populations 1.69836 1.06649 1.25771 1.60116 1.25550 0.96336 1.01081 1.04307 0.85106 0.78330 0.80072 0.76499 1.18886 1.22374 1.22199 1.19689 0.91427 0.85380 1.40072 0.90617 1.42788 1.05254 1.01076 1.88379 1.21139 0.94167 0.85057 0.94293 0.93535 1.22961 0.98476 0.98186 0.98281 1.22444 0.97846 0.97293 0.97003 1.22124 0.95277 0.97662 0.95272 0.87007 1.21417 0.97264 0.88168 0.92399 1.46188 1.13917 1.34797 1.41414 1.19578 0.82968 0.82130 0.83418 1.90733 1.38704 1.66753 1.47016 1.23717 1.06331 0.98426 0.89384 1.20116 0.75075 0.74780 0.88460 1.93214 1.67776 1.69380 1.86524 1.93070 1.43044 1.84050 1.95853 1.93191 1.95916 1.49457 1.76018 1.23145 0.99082 0.89357 1.02499 1.22772 0.94281 1.01328 0.98032 1.22994 0.91846 0.97644 1.02381 1.22369 0.99872 0.94979 0.98170 0.94233 0.79831 0.94416 0.90251 0.90086 0.94213 0.93566 0.90702 0.74583 0.85297 0.88597 0.90483 0.87260 0.90425 0.86287 0.93019 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 3 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 7 C -0.23 -13.08 9.96 84.03 0.84 -12.24 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.73 -37.26 5.08 -319.51 -1.62 -38.88 16 10 C 0.16 6.16 3.55 45.72 0.16 6.32 16 11 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 12 C -0.14 -4.62 6.54 31.67 0.21 -4.41 16 13 C -0.11 -3.04 6.19 31.89 0.20 -2.84 16 14 C -0.08 -2.00 2.89 -9.72 -0.03 -2.03 16 15 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 16 C 0.13 3.26 4.96 86.38 0.43 3.69 16 17 N -0.71 -15.01 5.13 -463.07 -2.37 -17.39 16 18 C 0.53 12.48 6.63 87.66 0.58 13.07 16 19 O -0.55 -17.24 15.83 -3.04 -0.05 -17.29 16 20 C -0.17 -2.83 0.87 -52.40 -0.05 -2.88 16 21 C 0.47 8.19 2.66 71.98 0.19 8.39 16 22 F -0.19 -4.21 17.17 44.97 0.77 -3.43 16 23 F -0.18 -3.14 14.49 44.97 0.65 -2.49 16 24 F -0.16 -2.38 15.75 44.97 0.71 -1.68 16 25 C -0.10 -0.97 7.10 31.12 0.22 -0.75 16 26 C -0.13 -1.33 7.75 31.12 0.24 -1.09 16 27 C -0.11 -1.57 6.81 31.12 0.21 -1.36 16 28 C -0.12 -3.47 6.14 31.32 0.19 -3.28 16 29 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.37 20.46 7.52 -92.71 -0.70 19.76 16 31 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 35 H 0.05 1.44 8.02 -2.39 -0.02 1.42 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.41 7.03 6.02 -92.71 -0.56 6.47 16 38 H 0.13 0.71 7.13 -2.39 -0.02 0.69 16 39 H 0.10 0.79 8.10 -2.38 -0.02 0.77 16 40 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.08 1.46 7.41 -2.39 -0.02 1.45 16 43 H 0.12 1.19 7.88 -2.38 -0.02 1.17 16 44 H 0.05 1.80 7.31 -2.39 -0.02 1.78 16 45 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -71.01 371.54 4.03 -66.98 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.23 Total: 29.55 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 3.86 Total: -3.68 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -3.71 Total: -116.97 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.05 Total: -17.29 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 2.13 Total: -7.60 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -71.01 4.03 -66.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488917625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.388 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.35 seconds