Wall clock time and date at job start Tue Mar 31 2020 20:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00097 * 2 1 4 4 C 1.52995 * 109.47500 * 270.00599 * 3 2 1 5 5 C 1.52996 * 109.47448 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47257 * 179.97438 * 5 4 3 7 7 C 1.36937 * 120.00062 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00128 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00301 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00428 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99921 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47080 * 89.99571 * 11 9 7 13 13 H 1.48500 * 109.47269 * 210.00036 * 11 9 7 14 14 H 1.48496 * 109.47020 * 329.99732 * 11 9 7 15 15 C 1.34777 * 120.00132 * 180.02562 * 2 1 3 16 16 O 1.21279 * 120.00265 * 179.97438 * 15 2 1 17 17 C 1.50702 * 119.99856 * 359.97438 * 15 2 1 18 18 C 1.50701 * 109.47005 * 180.02562 * 17 15 2 19 19 C 1.35124 * 125.69614 * 124.95396 * 18 17 15 20 20 N 1.36811 * 107.18714 * 180.02562 * 19 18 17 21 21 C 1.36607 * 132.54079 * 180.02562 * 20 19 18 22 22 C 1.35133 * 120.57116 * 180.25480 * 21 20 19 23 23 F 1.35096 * 119.87528 * 179.71920 * 22 21 20 24 24 C 1.40613 * 120.24613 * 359.45061 * 22 21 20 25 25 C 1.36009 * 119.68682 * 0.56128 * 24 22 21 26 26 C 1.37022 * 107.01401 * 359.97438 * 20 19 18 27 27 N 1.32613 * 108.03341 * 0.02562 * 26 20 19 28 28 H 1.09001 * 109.46987 * 269.99650 * 1 2 3 29 29 H 1.08996 * 109.47063 * 29.99995 * 1 2 3 30 30 H 1.09003 * 109.46816 * 149.99805 * 1 2 3 31 31 H 1.09012 * 109.46750 * 30.00483 * 3 2 1 32 32 H 1.08999 * 109.47073 * 150.00152 * 3 2 1 33 33 H 1.09000 * 109.46769 * 300.00003 * 4 3 2 34 34 H 1.09006 * 109.47344 * 59.99334 * 4 3 2 35 35 H 1.09000 * 109.47418 * 299.99948 * 5 4 3 36 36 H 1.08999 * 109.46821 * 59.99740 * 5 4 3 37 37 H 0.96997 * 120.00435 * 359.97438 * 6 5 4 38 38 H 0.96996 * 120.00036 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.47261 * 60.00202 * 17 15 2 40 40 H 1.08999 * 109.47193 * 300.00095 * 17 15 2 41 41 H 1.07999 * 126.40634 * 0.02562 * 19 18 17 42 42 H 1.08002 * 119.71111 * 359.96623 * 21 20 19 43 43 H 1.07995 * 120.15737 * 180.26014 * 24 22 21 44 44 H 1.07999 * 120.31302 * 179.74498 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2169 3.0358 -1.4424 6 7 3.4615 3.4585 -2.8236 7 6 4.1348 4.6244 -3.0738 8 1 4.4858 5.2321 -2.2529 9 6 4.3670 5.0247 -4.3824 10 7 5.0137 6.1456 -4.6229 11 14 3.7605 3.9733 -5.8024 12 1 2.3875 4.3951 -6.1794 13 1 4.6674 4.1421 -6.9660 14 1 3.7445 2.5467 -5.3903 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 6 2.3648 -3.6177 -0.0005 19 6 2.3993 -4.6256 0.8989 20 7 3.4318 -5.4496 0.5433 21 6 3.9206 -6.6045 1.0851 22 6 4.9795 -7.2313 0.5267 23 9 5.4549 -8.3696 1.0776 24 6 5.5849 -6.7063 -0.6287 25 6 5.1069 -5.5569 -1.1766 26 6 4.0049 -4.9126 -0.5795 27 7 3.3431 -3.8059 -0.8890 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5140 32 1 3.1500 1.1383 0.5138 33 1 3.0415 0.9509 -1.9563 34 1 1.5000 1.8408 -1.9563 35 1 2.6275 3.7953 -0.9286 36 1 4.1693 2.9058 -0.9285 37 1 3.1473 2.9122 -3.5609 38 1 5.1763 6.4251 -5.5374 39 1 0.7584 -2.5299 -0.8903 40 1 0.7591 -2.5302 0.8897 41 1 1.7358 -4.7561 1.7410 42 1 3.4595 -7.0175 1.9701 43 1 6.4284 -7.2107 -1.0762 44 1 5.5667 -5.1425 -2.0616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498587244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:01 Heat of formation + Delta-G solvation = 34.386293 kcal Electronic energy + Delta-G solvation = -27226.442897 eV Core-core repulsion = 23095.738621 eV Total energy + Delta-G solvation = -4130.704275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 8.13 seconds Orbital eigenvalues (eV) -49.56602 -43.21121 -39.89128 -37.63861 -36.14001 -34.90793 -34.14900 -32.65530 -31.79548 -30.23922 -29.48028 -28.18066 -27.01682 -25.25426 -24.03456 -23.18200 -22.50034 -21.22490 -20.91336 -19.24057 -18.68027 -18.08243 -17.47380 -17.21555 -16.81918 -16.63450 -16.10634 -15.70945 -15.56149 -15.46586 -14.95871 -14.51328 -14.43703 -14.22105 -13.94005 -13.78746 -13.45750 -13.18981 -13.15684 -12.79403 -12.57573 -12.46602 -12.14171 -12.05882 -11.94159 -11.63666 -11.47859 -11.11724 -10.86618 -10.74626 -10.42249 -10.35980 -10.07082 -9.75664 -9.52717 -8.98983 -8.82158 -8.65307 -8.32390 -7.15355 -5.70175 -3.05031 0.13853 0.70566 2.00218 2.30738 2.65852 2.92241 3.14054 3.43524 3.48156 3.49814 3.50756 3.68395 3.86823 4.22757 4.33003 4.49251 4.57251 4.66136 4.82114 4.90404 4.97378 5.08419 5.11471 5.21784 5.25789 5.30058 5.36559 5.40935 5.49272 5.51079 5.59110 5.67516 5.88154 5.94473 5.99179 6.10409 6.16778 6.34150 6.53449 6.57062 6.83665 6.86197 7.34523 7.54307 8.06637 8.22080 8.49225 9.28659 10.01380 10.21848 11.48355 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.002161 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.416837 B =12950.917481 C =14257.549205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.121 3.879 4 C -0.143 4.143 5 C 0.160 3.840 6 N -0.757 5.757 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.885 3.115 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.276 1.276 15 C 0.513 3.487 16 O -0.513 6.513 17 C -0.059 4.059 18 C 0.080 3.920 19 C -0.081 4.081 20 N -0.351 5.351 21 C 0.016 3.984 22 C 0.085 3.915 23 F -0.122 7.122 24 C -0.142 4.142 25 C -0.034 4.034 26 C 0.208 3.792 27 N -0.445 5.445 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.028 0.972 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.186 0.814 42 H 0.172 0.828 43 H 0.156 0.844 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.452 -30.842 15.218 35.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.355 5.355 3 C -0.001 4.001 4 C -0.182 4.182 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.372 4.372 8 H 0.108 0.892 9 C -0.194 4.194 10 N -0.584 5.584 11 Si 0.715 3.285 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.300 3.700 16 O -0.386 6.386 17 C -0.100 4.100 18 C -0.055 4.055 19 C -0.212 4.212 20 N -0.023 5.023 21 C -0.108 4.108 22 C 0.062 3.938 23 F -0.101 7.101 24 C -0.166 4.166 25 C -0.054 4.054 26 C -0.035 4.035 27 N -0.164 5.164 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.204 0.796 42 H 0.190 0.810 43 H 0.173 0.827 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.524 -30.144 14.670 34.851 hybrid contribution -0.601 -1.369 -0.267 1.519 sum -10.125 -31.513 14.403 36.098 Atomic orbital electron populations 1.21825 0.79707 1.03533 1.01677 1.47896 1.06880 1.06273 1.74419 1.21436 0.97601 0.83485 0.97619 1.22106 1.00923 0.98922 0.96266 1.20518 0.96626 0.91980 0.87606 1.42709 1.69672 1.26169 1.01666 1.19084 1.27658 0.96808 0.93604 0.89208 1.24680 1.00542 0.97249 0.96921 1.69707 1.46264 1.23045 1.19398 0.86521 0.78360 0.80438 0.83138 1.21129 1.21724 1.20258 1.20280 0.88188 0.84746 0.76828 1.90776 1.13597 1.86841 1.47435 1.20054 0.95903 0.88808 1.05211 1.20135 0.96596 0.95671 0.93080 1.22347 0.97297 0.95397 1.06191 1.42437 1.22447 1.16429 1.21020 1.21143 0.98657 0.89013 1.01975 1.16610 0.95789 0.85971 0.95417 1.91560 1.87143 1.46624 1.84773 1.21079 1.02453 0.97343 0.95679 1.20247 0.92069 0.93075 0.99984 1.21032 0.99513 0.93884 0.89096 1.70729 1.06917 1.12057 1.26662 0.92546 0.90618 0.91157 0.90427 0.89737 0.91529 0.92117 0.95562 0.95445 0.80697 0.93131 0.87104 0.87314 0.79648 0.81030 0.82667 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.24 59.85 0.61 1.13 16 2 N -0.62 -7.07 2.87 -181.57 -0.52 -7.59 16 3 C 0.12 1.63 5.41 -4.04 -0.02 1.60 16 4 C -0.14 -2.38 5.65 -26.74 -0.15 -2.53 16 5 C 0.16 3.29 6.26 -4.05 -0.03 3.27 16 6 N -0.76 -19.26 5.41 -59.91 -0.32 -19.59 16 7 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 10 N -0.94 -30.36 13.97 55.49 0.78 -29.58 16 11 Si 0.89 23.10 27.74 -169.99 -4.71 18.38 16 12 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 14 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 15 C 0.51 6.76 7.66 -10.98 -0.08 6.68 16 16 O -0.51 -9.35 15.14 5.56 0.08 -9.26 16 17 C -0.06 -0.52 4.81 -29.03 -0.14 -0.66 16 18 C 0.08 0.91 5.85 -82.98 -0.49 0.42 16 19 C -0.08 -0.71 11.63 -16.44 -0.19 -0.90 16 20 N -0.35 -3.37 2.95 -62.59 -0.18 -3.56 16 21 C 0.02 0.11 10.92 -16.53 -0.18 -0.07 16 22 C 0.08 0.61 7.25 -39.79 -0.29 0.32 16 23 F -0.12 -0.88 17.26 2.25 0.04 -0.84 16 24 C -0.14 -0.97 10.05 -39.49 -0.40 -1.37 16 25 C -0.03 -0.30 10.10 -39.37 -0.40 -0.70 16 26 C 0.21 2.47 7.81 -156.05 -1.22 1.25 16 27 N -0.45 -6.41 10.67 -9.01 -0.10 -6.50 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 30 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16 31 H 0.08 0.87 8.07 -51.92 -0.42 0.45 16 32 H 0.08 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.36 9.00 5.53 -40.82 -0.23 8.77 16 38 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 39 H 0.11 0.81 7.40 -51.93 -0.38 0.42 16 40 H 0.11 0.53 8.07 -51.93 -0.42 0.12 16 41 H 0.19 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -40.02 376.66 -8.47 -48.49 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.98 Total: 3.34 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -3.22 Total: 1.04 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -0.35 Total: -66.82 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 0.04 Total: -0.84 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.71 Total: 18.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -40.02 -8.47 -48.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498587244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.876 kcal (2) G-P(sol) polarization free energy of solvation -40.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.13 seconds