Wall clock time and date at job start Tue Mar 31 2020 20:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00097 * 2 1 4 4 C 1.52995 * 109.47500 * 270.00599 * 3 2 1 5 5 C 1.52996 * 109.47448 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47257 * 179.97438 * 5 4 3 7 7 C 1.36937 * 120.00062 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00128 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00301 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00428 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99921 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47080 * 89.99571 * 11 9 7 13 13 H 1.48500 * 109.47269 * 210.00036 * 11 9 7 14 14 H 1.48496 * 109.47020 * 329.99732 * 11 9 7 15 15 C 1.34777 * 120.00132 * 180.02562 * 2 1 3 16 16 O 1.21279 * 120.00265 * 179.97438 * 15 2 1 17 17 C 1.50702 * 119.99856 * 359.97438 * 15 2 1 18 18 C 1.50701 * 109.47005 * 180.02562 * 17 15 2 19 19 C 1.35124 * 125.69614 * 124.95396 * 18 17 15 20 20 N 1.36811 * 107.18714 * 180.02562 * 19 18 17 21 21 C 1.36607 * 132.54079 * 180.02562 * 20 19 18 22 22 C 1.35133 * 120.57116 * 180.25480 * 21 20 19 23 23 F 1.35096 * 119.87528 * 179.71920 * 22 21 20 24 24 C 1.40613 * 120.24613 * 359.45061 * 22 21 20 25 25 C 1.36009 * 119.68682 * 0.56128 * 24 22 21 26 26 C 1.37022 * 107.01401 * 359.97438 * 20 19 18 27 27 N 1.32613 * 108.03341 * 0.02562 * 26 20 19 28 28 H 1.09001 * 109.46987 * 269.99650 * 1 2 3 29 29 H 1.08996 * 109.47063 * 29.99995 * 1 2 3 30 30 H 1.09003 * 109.46816 * 149.99805 * 1 2 3 31 31 H 1.09012 * 109.46750 * 30.00483 * 3 2 1 32 32 H 1.08999 * 109.47073 * 150.00152 * 3 2 1 33 33 H 1.09000 * 109.46769 * 300.00003 * 4 3 2 34 34 H 1.09006 * 109.47344 * 59.99334 * 4 3 2 35 35 H 1.09000 * 109.47418 * 299.99948 * 5 4 3 36 36 H 1.08999 * 109.46821 * 59.99740 * 5 4 3 37 37 H 0.96997 * 120.00435 * 359.97438 * 6 5 4 38 38 H 0.96996 * 120.00036 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.47261 * 60.00202 * 17 15 2 40 40 H 1.08999 * 109.47193 * 300.00095 * 17 15 2 41 41 H 1.07999 * 126.40634 * 0.02562 * 19 18 17 42 42 H 1.08002 * 119.71111 * 359.96623 * 21 20 19 43 43 H 1.07995 * 120.15737 * 180.26014 * 24 22 21 44 44 H 1.07999 * 120.31302 * 179.74498 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2169 3.0358 -1.4424 6 7 3.4615 3.4585 -2.8236 7 6 4.1348 4.6244 -3.0738 8 1 4.4858 5.2321 -2.2529 9 6 4.3670 5.0247 -4.3824 10 7 5.0137 6.1456 -4.6229 11 14 3.7605 3.9733 -5.8024 12 1 2.3875 4.3951 -6.1794 13 1 4.6674 4.1421 -6.9660 14 1 3.7445 2.5467 -5.3903 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 6 2.3648 -3.6177 -0.0005 19 6 2.3993 -4.6256 0.8989 20 7 3.4318 -5.4496 0.5433 21 6 3.9206 -6.6045 1.0851 22 6 4.9795 -7.2313 0.5267 23 9 5.4549 -8.3696 1.0776 24 6 5.5849 -6.7063 -0.6287 25 6 5.1069 -5.5569 -1.1766 26 6 4.0049 -4.9126 -0.5795 27 7 3.3431 -3.8059 -0.8890 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5140 32 1 3.1500 1.1383 0.5138 33 1 3.0415 0.9509 -1.9563 34 1 1.5000 1.8408 -1.9563 35 1 2.6275 3.7953 -0.9286 36 1 4.1693 2.9058 -0.9285 37 1 3.1473 2.9122 -3.5609 38 1 5.1763 6.4251 -5.5374 39 1 0.7584 -2.5299 -0.8903 40 1 0.7591 -2.5302 0.8897 41 1 1.7358 -4.7561 1.7410 42 1 3.4595 -7.0175 1.9701 43 1 6.4284 -7.2107 -1.0762 44 1 5.5667 -5.1425 -2.0616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498587244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:41 Heat of formation + Delta-G solvation = 7.212067 kcal Electronic energy + Delta-G solvation = -27227.621260 eV Core-core repulsion = 23095.738621 eV Total energy + Delta-G solvation = -4131.882638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 15.12 seconds Orbital eigenvalues (eV) -50.11273 -43.87295 -40.83940 -38.30383 -37.54793 -36.39574 -34.79928 -34.22942 -33.03650 -31.81517 -30.14214 -28.97962 -27.90427 -26.58154 -24.80994 -24.10210 -23.83551 -22.73366 -21.89933 -20.08934 -19.67186 -19.32306 -18.69374 -18.05735 -17.43344 -17.33415 -17.06076 -16.67315 -16.32374 -16.23474 -16.08263 -15.89972 -15.66721 -15.54030 -14.90347 -14.80499 -14.49529 -14.34894 -14.10208 -13.90879 -13.69282 -13.55431 -13.18160 -13.04283 -12.81610 -12.71034 -12.66994 -12.48921 -12.31915 -12.08270 -12.07533 -11.85187 -11.79867 -11.11665 -11.00724 -10.76467 -9.65710 -9.59021 -9.34472 -8.95689 -8.06341 -5.40471 -0.44092 0.08338 1.34743 1.38700 1.40444 1.46139 1.64349 1.73415 2.15267 2.39592 2.45300 2.90526 3.08938 3.24254 3.33408 3.58517 3.68774 3.74992 3.84803 3.97064 4.08530 4.22256 4.29482 4.37414 4.43067 4.45154 4.55383 4.59414 4.65714 4.72868 4.77311 4.79693 4.82233 4.90123 4.93708 5.06241 5.25746 5.26660 5.36514 5.50662 5.62477 5.71232 5.96626 6.17917 6.49321 6.85408 7.03270 7.30831 7.79513 7.98943 9.15064 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.002161 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.416837 B =12950.917481 C =14257.549205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.617 5.617 3 C 0.127 3.873 4 C -0.125 4.125 5 C 0.157 3.843 6 N -0.761 5.761 7 C -0.240 4.240 8 H 0.057 0.943 9 C -0.065 4.065 10 N -0.982 5.982 11 Si 0.959 3.041 12 H -0.270 1.270 13 H -0.292 1.292 14 H -0.261 1.261 15 C 0.504 3.496 16 O -0.577 6.577 17 C -0.049 4.049 18 C 0.046 3.954 19 C -0.069 4.069 20 N -0.356 5.356 21 C 0.021 3.979 22 C 0.076 3.924 23 F -0.121 7.121 24 C -0.124 4.124 25 C -0.062 4.062 26 C 0.181 3.819 27 N -0.505 5.505 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.013 0.987 37 H 0.365 0.635 38 H 0.259 0.741 39 H 0.127 0.873 40 H 0.156 0.844 41 H 0.231 0.769 42 H 0.207 0.793 43 H 0.181 0.819 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 -33.635 16.377 39.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.350 5.350 3 C 0.003 3.997 4 C -0.164 4.164 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.371 4.371 8 H 0.075 0.925 9 C -0.257 4.257 10 N -0.632 5.632 11 Si 0.786 3.214 12 H -0.195 1.195 13 H -0.219 1.219 14 H -0.186 1.186 15 C 0.292 3.708 16 O -0.455 6.455 17 C -0.089 4.089 18 C -0.087 4.087 19 C -0.200 4.200 20 N -0.028 5.028 21 C -0.102 4.102 22 C 0.054 3.946 23 F -0.099 7.099 24 C -0.148 4.148 25 C -0.082 4.082 26 C -0.062 4.062 27 N -0.225 5.225 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.031 0.969 37 H 0.198 0.802 38 H 0.068 0.932 39 H 0.145 0.855 40 H 0.173 0.827 41 H 0.247 0.753 42 H 0.224 0.776 43 H 0.198 0.802 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.573 -32.963 15.870 38.684 hybrid contribution 0.368 -0.508 -0.501 0.803 sum -12.206 -33.471 15.369 38.801 Atomic orbital electron populations 1.22179 0.76423 1.04920 1.03891 1.48002 1.08791 1.04918 1.73324 1.21233 0.97726 0.85521 0.95173 1.21914 1.00324 0.95613 0.98551 1.20692 0.96756 0.94423 0.85113 1.42758 1.69207 1.24915 1.03819 1.19075 1.27334 0.97732 0.92916 0.92460 1.25556 1.01256 0.98846 1.00016 1.69885 1.48057 1.25187 1.20088 0.85352 0.78134 0.79135 0.78826 1.19541 1.21895 1.18618 1.21144 0.87776 0.86423 0.75417 1.90749 1.16542 1.87816 1.50422 1.20178 0.95305 0.85324 1.08080 1.20679 0.97034 0.97343 0.93657 1.23008 0.96808 0.94026 1.06143 1.42624 1.22548 1.17047 1.20577 1.21676 0.98274 0.87827 1.02424 1.16701 0.96147 0.86164 0.95623 1.91569 1.87149 1.46481 1.84726 1.21356 1.02235 0.96140 0.95030 1.20389 0.92555 0.94280 1.00982 1.21372 1.00396 0.94068 0.90346 1.70636 1.08931 1.13852 1.29045 0.89856 0.90360 0.88761 0.87453 0.92224 0.94402 0.90453 0.94164 0.96900 0.80249 0.93183 0.85509 0.82683 0.75284 0.77576 0.80170 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.24 127.77 1.31 1.96 16 2 N -0.62 -12.87 2.87 -846.74 -2.43 -15.30 16 3 C 0.13 3.30 5.41 86.38 0.47 3.76 16 4 C -0.12 -4.09 5.65 30.59 0.17 -3.92 16 5 C 0.16 6.47 6.26 86.38 0.54 7.01 16 6 N -0.76 -38.82 5.41 -343.47 -1.86 -40.67 16 7 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 8 H 0.06 3.78 8.06 -2.91 -0.02 3.75 16 9 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 10 N -0.98 -65.17 13.97 21.65 0.30 -64.87 16 11 Si 0.96 47.93 27.74 68.60 1.90 49.83 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 14 H -0.26 -12.25 6.52 99.48 0.65 -11.60 16 15 C 0.50 12.89 7.66 87.66 0.67 13.56 16 16 O -0.58 -21.91 15.14 -3.03 -0.05 -21.96 16 17 C -0.05 -0.75 4.81 29.10 0.14 -0.61 16 18 C 0.05 1.01 5.85 41.59 0.24 1.25 16 19 C -0.07 -1.05 11.63 83.20 0.97 -0.08 16 20 N -0.36 -6.37 2.95 -351.93 -1.04 -7.41 16 21 C 0.02 0.25 10.92 83.23 0.91 1.16 16 22 C 0.08 0.96 7.25 22.13 0.16 1.12 16 23 F -0.12 -1.48 17.26 44.97 0.78 -0.71 16 24 C -0.12 -1.60 10.05 22.33 0.22 -1.38 16 25 C -0.06 -1.15 10.10 22.41 0.23 -0.93 16 26 C 0.18 4.42 7.81 134.10 1.05 5.47 16 27 N -0.50 -15.07 10.67 -182.42 -1.95 -17.01 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.77 8.07 -2.39 -0.02 0.75 16 30 H 0.09 0.49 6.44 -2.39 -0.02 0.48 16 31 H 0.11 2.14 8.07 -2.38 -0.02 2.12 16 32 H 0.06 1.86 7.42 -2.39 -0.02 1.84 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.36 17.84 5.53 -92.71 -0.51 17.33 16 38 H 0.26 16.29 8.31 -92.71 -0.77 15.51 16 39 H 0.13 1.50 7.40 -2.39 -0.02 1.48 16 40 H 0.16 0.81 8.07 -2.39 -0.02 0.79 16 41 H 0.23 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.21 0.84 8.06 -2.91 -0.02 0.81 16 43 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -93.11 376.66 4.54 -88.57 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.46 Total: 18.44 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 8.43 Total: 11.09 kcal Atomic # 7 Polarization: -138.30 SS G_CDS: -6.97 Total: -145.27 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.78 Total: -0.71 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.90 Total: 49.83 kcal Total: -93.11 4.54 -88.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498587244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.779 kcal (2) G-P(sol) polarization free energy of solvation -93.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.12 seconds