Wall clock time and date at job start Tue Mar 31 2020 21:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00285 * 2 1 4 4 H 1.48496 * 109.47311 * 273.31961 * 3 2 1 5 5 H 1.48500 * 109.47039 * 33.32161 * 3 2 1 6 6 H 1.48503 * 109.47459 * 153.31737 * 3 2 1 7 7 C 1.38816 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 339.38524 * 7 2 1 9 9 N 1.36935 * 119.99920 * 159.11387 * 7 2 1 10 10 C 1.46934 * 120.67793 * 332.74683 * 9 7 2 11 11 C 1.52747 * 109.08413 * 234.05696 * 10 9 7 12 12 C 1.53125 * 109.36759 * 305.08116 * 11 10 9 13 13 C 1.52483 * 109.65497 * 60.36414 * 12 11 10 14 14 C 1.53836 * 110.21653 * 178.09249 * 13 12 11 15 15 C 1.54503 * 104.79206 * 240.96009 * 14 13 12 16 16 N 1.48182 * 104.63126 * 23.80118 * 15 14 13 17 17 C 1.34777 * 127.80102 * 140.66472 * 16 15 14 18 18 O 1.21286 * 119.99930 * 180.02562 * 17 16 15 19 19 C 1.50698 * 120.00181 * 0.02562 * 17 16 15 20 20 C 1.53001 * 109.47337 * 180.02562 * 19 17 16 21 21 C 1.53001 * 109.47430 * 179.97438 * 20 19 17 22 22 F 1.39897 * 109.46677 * 59.99750 * 21 20 19 23 23 F 1.39898 * 109.46970 * 179.97438 * 21 20 19 24 24 F 1.39905 * 109.46800 * 300.00047 * 21 20 19 25 25 C 1.48252 * 104.39557 * 320.69574 * 16 15 14 26 26 C 1.47026 * 120.67307 * 153.02955 * 9 7 2 27 27 H 0.97002 * 119.99820 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.56989 * 353.91206 * 10 9 7 29 29 H 1.09003 * 109.57503 * 114.28934 * 10 9 7 30 30 H 1.08999 * 109.57175 * 185.05400 * 11 10 9 31 31 H 1.09002 * 109.36410 * 64.98504 * 11 10 9 32 32 H 1.08997 * 109.44152 * 300.31384 * 12 11 10 33 33 H 1.08995 * 109.44413 * 180.41782 * 12 11 10 34 34 H 1.08997 * 110.37514 * 359.79072 * 14 13 12 35 35 H 1.09003 * 110.37251 * 122.02568 * 14 13 12 36 36 H 1.09010 * 110.39908 * 142.58540 * 15 14 13 37 37 H 1.08998 * 110.40951 * 265.00852 * 15 14 13 38 38 H 1.09004 * 109.46889 * 299.99707 * 19 17 16 39 39 H 1.08995 * 109.47357 * 60.00177 * 19 17 16 40 40 H 1.09004 * 109.47325 * 300.00401 * 20 19 17 41 41 H 1.09002 * 109.47365 * 59.99323 * 20 19 17 42 42 H 1.09001 * 110.42414 * 280.39281 * 25 16 15 43 43 H 1.09006 * 110.42332 * 157.91880 * 25 16 15 44 44 H 1.09002 * 109.57268 * 247.04926 * 26 9 7 45 45 H 1.08995 * 109.57672 * 7.42952 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4275 2.0869 -1.3977 5 1 1.4846 2.6313 0.7691 6 1 3.5811 1.4209 0.6287 7 6 2.0102 -1.2022 -0.0005 8 1 1.5220 -2.1077 0.3284 9 7 3.3120 -1.2410 -0.4233 10 6 3.8141 -0.2600 -1.3953 11 6 4.4441 -1.0013 -2.5729 12 6 5.5172 -1.9619 -2.0529 13 6 4.8832 -2.9751 -1.1060 14 6 5.9417 -3.9765 -0.6127 15 6 5.4421 -5.3531 -1.1050 16 7 4.5707 -5.0430 -2.2626 17 6 4.4682 -5.7191 -3.4240 18 8 3.7026 -5.3360 -4.2832 19 6 5.3049 -6.9509 -3.6552 20 6 4.9995 -7.5222 -5.0413 21 6 5.8494 -8.7726 -5.2762 22 9 5.5501 -9.7298 -4.3009 23 9 5.5696 -9.2952 -6.5434 24 9 7.2052 -8.4361 -5.1989 25 6 3.8375 -3.8206 -1.8550 26 6 4.2343 -2.2688 0.0813 27 1 -0.4850 0.8401 0.0004 28 1 2.9885 0.3555 -1.7525 29 1 4.5650 0.3722 -0.9214 30 1 4.8987 -0.2831 -3.2554 31 1 3.6739 -1.5661 -3.0982 32 1 6.2823 -1.3971 -1.5203 33 1 5.9728 -2.4861 -2.8929 34 1 6.9137 -3.7471 -1.0493 35 1 6.0018 -3.9597 0.4756 36 1 6.2827 -5.9729 -1.4174 37 1 4.8710 -5.8524 -0.3223 38 1 6.3613 -6.6891 -3.5953 39 1 5.0716 -7.6965 -2.8951 40 1 3.9430 -7.7839 -5.1018 41 1 5.2330 -6.7765 -5.8012 42 1 3.0101 -4.0762 -1.1932 43 1 3.4730 -3.2854 -2.7319 44 1 5.0050 -1.7994 0.6927 45 1 3.6817 -2.9931 0.6797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499566706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:58 Heat of formation + Delta-G solvation = -169.920347 kcal Electronic energy + Delta-G solvation = -30138.640370 eV Core-core repulsion = 25548.387507 eV Total energy + Delta-G solvation = -4590.252863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -50.41970 -47.91120 -47.89980 -40.42776 -38.73123 -36.16090 -34.03728 -33.09789 -31.55464 -30.90768 -29.16124 -27.96242 -25.52901 -25.35439 -23.64195 -22.68576 -22.04315 -20.95500 -19.51027 -18.88593 -18.54113 -18.30135 -17.94381 -16.83836 -16.47949 -16.25213 -15.47175 -15.32575 -15.24626 -14.76639 -14.59462 -14.32515 -14.23194 -14.05408 -14.04418 -13.85274 -13.64467 -13.52907 -13.37325 -13.06663 -12.78499 -12.61764 -12.21413 -12.19573 -12.02177 -11.86269 -11.73091 -11.65303 -11.42195 -11.01649 -10.89023 -10.53505 -10.49083 -10.05758 -9.94795 -9.81549 -9.66379 -9.44143 -8.66723 -8.62295 -7.00001 -5.96366 -3.32505 2.37454 2.54434 2.89878 3.31695 3.47464 3.50008 3.50832 3.68393 3.74334 4.30905 4.49460 4.51954 4.56447 4.63187 4.78961 4.88209 4.99103 5.07760 5.23417 5.27185 5.28075 5.38028 5.41514 5.49020 5.57761 5.74518 5.84769 5.90144 5.91919 5.99227 6.12097 6.16900 6.33861 6.34247 6.44362 6.51250 6.57219 6.65565 6.71909 6.94744 7.55993 7.92994 8.08172 8.30440 8.91031 9.70191 10.07482 11.19428 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.002639 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.597122 B =10607.414785 C =10828.452646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.125 3.875 11 C -0.140 4.140 12 C -0.092 4.092 13 C -0.088 4.088 14 C -0.126 4.126 15 C 0.099 3.901 16 N -0.621 5.621 17 C 0.535 3.465 18 O -0.540 6.540 19 C -0.142 4.142 20 C -0.151 4.151 21 C 0.453 3.547 22 F -0.184 7.184 23 F -0.183 7.183 24 F -0.185 7.185 25 C 0.125 3.875 26 C 0.165 3.835 27 H 0.263 0.737 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.027 0.973 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.077 -15.699 -6.151 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.174 4.174 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.328 5.328 10 C 0.000 4.000 11 C -0.179 4.179 12 C -0.130 4.130 13 C -0.091 4.091 14 C -0.164 4.164 15 C -0.024 4.024 16 N -0.355 5.355 17 C 0.323 3.677 18 O -0.418 6.418 19 C -0.182 4.182 20 C -0.190 4.190 21 C 0.399 3.601 22 F -0.166 7.166 23 F -0.164 7.164 24 F -0.166 7.166 25 C 0.004 3.996 26 C 0.038 3.962 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.045 0.955 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.487 -15.487 -6.684 22.900 hybrid contribution 0.622 0.789 0.014 1.005 sum 16.109 -14.698 -6.670 22.804 Atomic orbital electron populations 1.69839 1.05758 1.26573 1.52806 1.25251 0.95171 0.97603 0.99417 0.86942 0.80007 0.84701 0.76930 1.21701 1.23282 1.19576 1.18868 0.84971 0.94704 1.40303 0.89748 1.44347 1.08811 1.32971 1.46639 1.21247 0.97279 0.92070 0.89415 1.22040 0.98271 0.98668 0.98928 1.21341 0.97503 0.96456 0.97695 1.21649 0.94724 0.94874 0.97843 1.22570 0.98745 0.93518 1.01608 1.22475 0.93813 0.97875 0.88227 1.49119 1.42561 1.28858 1.14941 1.19754 0.83107 0.84149 0.80643 1.90755 1.39243 1.68769 1.43024 1.21584 1.02168 0.97306 0.97100 1.22622 1.01989 0.93893 1.00448 1.20606 0.79317 0.86291 0.73892 1.93188 1.93007 1.67262 1.63109 1.93198 1.93438 1.88411 1.41392 1.93187 1.35170 1.92276 1.95975 1.22467 0.93967 0.83205 0.99985 1.20908 0.92365 0.91249 0.91685 0.92762 0.91052 0.95819 0.92754 0.91450 0.92348 0.93145 0.91050 0.89953 0.90675 0.90688 0.87746 0.87676 0.86297 0.86369 0.90384 0.89315 0.95511 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.52 13.97 55.49 0.78 -26.74 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.11 24.36 -169.99 -4.14 17.97 16 4 H -0.29 -7.05 6.63 56.52 0.37 -6.67 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.27 -6.61 6.64 56.52 0.38 -6.23 16 7 C -0.26 -6.99 10.04 -15.06 -0.15 -7.14 16 8 H 0.08 2.42 8.05 -52.49 -0.42 1.99 16 9 N -0.60 -13.53 2.61 -172.84 -0.45 -13.98 16 10 C 0.13 2.65 4.17 -3.94 -0.02 2.63 16 11 C -0.14 -2.45 5.86 -26.80 -0.16 -2.60 16 12 C -0.09 -1.36 4.48 -26.93 -0.12 -1.48 16 13 C -0.09 -1.27 0.68 -154.04 -0.11 -1.37 16 14 C -0.13 -1.29 6.29 -25.51 -0.16 -1.45 16 15 C 0.10 0.92 6.92 -2.33 -0.02 0.90 16 16 N -0.62 -7.92 3.32 -169.40 -0.56 -8.48 16 17 C 0.54 6.92 7.91 -10.99 -0.09 6.83 16 18 O -0.54 -9.19 16.25 5.55 0.09 -9.10 16 19 C -0.14 -1.18 4.44 -27.88 -0.12 -1.30 16 20 C -0.15 -1.23 4.55 -26.73 -0.12 -1.35 16 21 C 0.45 3.75 3.16 37.16 0.12 3.87 16 22 F -0.18 -1.62 16.80 2.25 0.04 -1.58 16 23 F -0.18 -1.70 17.32 2.25 0.04 -1.66 16 24 F -0.18 -1.61 16.80 2.25 0.04 -1.57 16 25 C 0.12 1.98 5.79 -2.60 -0.02 1.97 16 26 C 0.16 2.90 4.90 -3.94 -0.02 2.88 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.07 1.69 4.46 -51.93 -0.23 1.46 16 29 H 0.02 0.50 7.11 -51.93 -0.37 0.13 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.28 6.21 -51.93 -0.32 0.95 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.67 7.70 -51.93 -0.40 0.27 16 35 H 0.08 0.76 7.70 -51.93 -0.40 0.36 16 36 H 0.07 0.50 7.31 -51.92 -0.38 0.12 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.70 7.61 -51.93 -0.40 0.31 16 39 H 0.10 0.72 7.80 -51.93 -0.41 0.31 16 40 H 0.12 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.12 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.08 1.37 7.73 -51.93 -0.40 0.97 16 43 H 0.09 1.66 5.63 -51.93 -0.29 1.37 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 1.14 7.76 -51.93 -0.40 0.74 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -31.96 356.50 -6.43 -38.40 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.57 Total: -1.61 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.07 Total: 2.99 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.24 Total: -49.21 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.11 Total: -4.82 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.96 -6.43 -38.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499566706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.523 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds