Wall clock time and date at job start Tue Mar 31 2020 21:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00285 * 2 1 4 4 H 1.48496 * 109.47311 * 273.31961 * 3 2 1 5 5 H 1.48500 * 109.47039 * 33.32161 * 3 2 1 6 6 H 1.48503 * 109.47459 * 153.31737 * 3 2 1 7 7 C 1.38816 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99990 * 339.38524 * 7 2 1 9 9 N 1.36935 * 119.99920 * 159.11387 * 7 2 1 10 10 C 1.46934 * 120.67793 * 332.74683 * 9 7 2 11 11 C 1.52747 * 109.08413 * 234.05696 * 10 9 7 12 12 C 1.53125 * 109.36759 * 305.08116 * 11 10 9 13 13 C 1.52483 * 109.65497 * 60.36414 * 12 11 10 14 14 C 1.53836 * 110.21653 * 178.09249 * 13 12 11 15 15 C 1.54503 * 104.79206 * 240.96009 * 14 13 12 16 16 N 1.48182 * 104.63126 * 23.80118 * 15 14 13 17 17 C 1.34777 * 127.80102 * 140.66472 * 16 15 14 18 18 O 1.21286 * 119.99930 * 180.02562 * 17 16 15 19 19 C 1.50698 * 120.00181 * 0.02562 * 17 16 15 20 20 C 1.53001 * 109.47337 * 180.02562 * 19 17 16 21 21 C 1.53001 * 109.47430 * 179.97438 * 20 19 17 22 22 F 1.39897 * 109.46677 * 59.99750 * 21 20 19 23 23 F 1.39898 * 109.46970 * 179.97438 * 21 20 19 24 24 F 1.39905 * 109.46800 * 300.00047 * 21 20 19 25 25 C 1.48252 * 104.39557 * 320.69574 * 16 15 14 26 26 C 1.47026 * 120.67307 * 153.02955 * 9 7 2 27 27 H 0.97002 * 119.99820 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.56989 * 353.91206 * 10 9 7 29 29 H 1.09003 * 109.57503 * 114.28934 * 10 9 7 30 30 H 1.08999 * 109.57175 * 185.05400 * 11 10 9 31 31 H 1.09002 * 109.36410 * 64.98504 * 11 10 9 32 32 H 1.08997 * 109.44152 * 300.31384 * 12 11 10 33 33 H 1.08995 * 109.44413 * 180.41782 * 12 11 10 34 34 H 1.08997 * 110.37514 * 359.79072 * 14 13 12 35 35 H 1.09003 * 110.37251 * 122.02568 * 14 13 12 36 36 H 1.09010 * 110.39908 * 142.58540 * 15 14 13 37 37 H 1.08998 * 110.40951 * 265.00852 * 15 14 13 38 38 H 1.09004 * 109.46889 * 299.99707 * 19 17 16 39 39 H 1.08995 * 109.47357 * 60.00177 * 19 17 16 40 40 H 1.09004 * 109.47325 * 300.00401 * 20 19 17 41 41 H 1.09002 * 109.47365 * 59.99323 * 20 19 17 42 42 H 1.09001 * 110.42414 * 280.39281 * 25 16 15 43 43 H 1.09006 * 110.42332 * 157.91880 * 25 16 15 44 44 H 1.09002 * 109.57268 * 247.04926 * 26 9 7 45 45 H 1.08995 * 109.57672 * 7.42952 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4275 2.0869 -1.3977 5 1 1.4846 2.6313 0.7691 6 1 3.5811 1.4209 0.6287 7 6 2.0102 -1.2022 -0.0005 8 1 1.5220 -2.1077 0.3284 9 7 3.3120 -1.2410 -0.4233 10 6 3.8141 -0.2600 -1.3953 11 6 4.4441 -1.0013 -2.5729 12 6 5.5172 -1.9619 -2.0529 13 6 4.8832 -2.9751 -1.1060 14 6 5.9417 -3.9765 -0.6127 15 6 5.4421 -5.3531 -1.1050 16 7 4.5707 -5.0430 -2.2626 17 6 4.4682 -5.7191 -3.4240 18 8 3.7026 -5.3360 -4.2832 19 6 5.3049 -6.9509 -3.6552 20 6 4.9995 -7.5222 -5.0413 21 6 5.8494 -8.7726 -5.2762 22 9 5.5501 -9.7298 -4.3009 23 9 5.5696 -9.2952 -6.5434 24 9 7.2052 -8.4361 -5.1989 25 6 3.8375 -3.8206 -1.8550 26 6 4.2343 -2.2688 0.0813 27 1 -0.4850 0.8401 0.0004 28 1 2.9885 0.3555 -1.7525 29 1 4.5650 0.3722 -0.9214 30 1 4.8987 -0.2831 -3.2554 31 1 3.6739 -1.5661 -3.0982 32 1 6.2823 -1.3971 -1.5203 33 1 5.9728 -2.4861 -2.8929 34 1 6.9137 -3.7471 -1.0493 35 1 6.0018 -3.9597 0.4756 36 1 6.2827 -5.9729 -1.4174 37 1 4.8710 -5.8524 -0.3223 38 1 6.3613 -6.6891 -3.5953 39 1 5.0716 -7.6965 -2.8951 40 1 3.9430 -7.7839 -5.1018 41 1 5.2330 -6.7765 -5.8012 42 1 3.0101 -4.0762 -1.1932 43 1 3.4730 -3.2854 -2.7319 44 1 5.0050 -1.7994 0.6927 45 1 3.6817 -2.9931 0.6797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499566706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:58 Heat of formation + Delta-G solvation = -190.187410 kcal Electronic energy + Delta-G solvation = -30139.519216 eV Core-core repulsion = 25548.387507 eV Total energy + Delta-G solvation = -4591.131708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -51.08861 -48.59653 -48.55729 -41.52968 -39.92875 -37.53798 -34.92572 -34.65535 -32.95134 -32.65144 -30.19765 -28.89606 -27.22261 -26.55077 -24.72462 -23.75687 -23.34571 -22.34989 -20.37770 -19.64646 -19.54319 -19.27705 -18.75210 -18.61280 -17.49013 -17.25795 -17.17434 -16.40489 -16.16909 -15.79943 -15.46043 -15.42389 -15.33472 -15.11835 -15.00002 -14.75832 -14.73346 -14.70462 -14.54656 -14.30880 -14.07022 -13.70244 -13.53761 -13.35972 -13.25498 -13.04015 -12.80967 -12.71893 -12.50022 -12.41546 -12.29071 -12.09120 -11.83416 -11.63885 -11.51767 -11.20347 -11.09536 -10.95724 -10.63405 -9.73264 -8.89549 -8.15443 -5.45988 1.30765 1.40647 1.50194 1.56748 1.64339 2.02593 2.42964 2.82954 3.00766 3.04932 3.09802 3.33112 3.51341 3.71072 3.77252 3.80239 3.95626 3.96927 4.20975 4.21837 4.33158 4.40335 4.45039 4.53237 4.57267 4.63622 4.71291 4.77840 4.78772 4.82836 4.91503 5.00200 5.05182 5.05675 5.10223 5.18924 5.26016 5.30370 5.51692 5.55828 5.87785 6.14016 6.59879 6.93427 7.08852 7.64663 8.05193 9.04631 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.002639 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.597122 B =10607.414785 C =10828.452646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.039 4.039 3 Si 0.948 3.052 4 H -0.282 1.282 5 H -0.315 1.315 6 H -0.254 1.254 7 C -0.240 4.240 8 H 0.051 0.949 9 N -0.619 5.619 10 C 0.121 3.879 11 C -0.135 4.135 12 C -0.086 4.086 13 C -0.082 4.082 14 C -0.116 4.116 15 C 0.097 3.903 16 N -0.621 5.621 17 C 0.529 3.471 18 O -0.592 6.592 19 C -0.129 4.129 20 C -0.149 4.149 21 C 0.462 3.538 22 F -0.185 7.185 23 F -0.190 7.190 24 F -0.184 7.184 25 C 0.128 3.872 26 C 0.160 3.840 27 H 0.260 0.740 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.532 -16.842 -5.878 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.233 4.233 3 Si 0.778 3.222 4 H -0.209 1.209 5 H -0.244 1.244 6 H -0.178 1.178 7 C -0.370 4.370 8 H 0.068 0.932 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.174 4.174 12 C -0.123 4.123 13 C -0.084 4.084 14 C -0.155 4.155 15 C -0.025 4.025 16 N -0.354 5.354 17 C 0.319 3.681 18 O -0.474 6.474 19 C -0.168 4.168 20 C -0.187 4.187 21 C 0.408 3.592 22 F -0.167 7.167 23 F -0.172 7.172 24 F -0.165 7.165 25 C 0.005 3.995 26 C 0.036 3.964 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.030 -16.668 -6.395 26.831 hybrid contribution -0.803 1.030 -0.093 1.310 sum 19.226 -15.638 -6.488 25.618 Atomic orbital electron populations 1.69984 1.07550 1.27067 1.56118 1.25899 0.95762 1.01080 1.00595 0.85881 0.79030 0.80235 0.77079 1.20914 1.24392 1.17808 1.18815 0.86961 0.93268 1.37929 0.93162 1.44475 1.08026 1.34383 1.47395 1.21283 0.96581 0.92091 0.90450 1.21952 0.98577 0.99270 0.97614 1.21326 0.96714 0.95947 0.98323 1.21519 0.95309 0.95378 0.96215 1.22578 0.97973 0.92142 1.02793 1.22764 0.94530 0.98104 0.87053 1.49203 1.42467 1.27666 1.16016 1.20621 0.82746 0.84901 0.79816 1.90736 1.41559 1.70279 1.44780 1.21589 1.02515 0.95186 0.97558 1.22569 1.01733 0.93802 1.00619 1.20479 0.79189 0.86029 0.73526 1.93189 1.93021 1.67362 1.63088 1.93187 1.93504 1.88504 1.41963 1.93190 1.35135 1.92244 1.95946 1.22124 0.94365 0.84976 0.98022 1.21137 0.91862 0.90136 0.93298 0.93158 0.94161 0.94412 0.90574 0.94043 0.90235 0.91569 0.88675 0.88304 0.86589 0.89884 0.84995 0.85449 0.86855 0.86570 0.93388 0.93070 0.93509 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.26 13.97 21.65 0.30 -60.96 16 2 C -0.04 -2.29 5.23 84.86 0.44 -1.85 16 3 Si 0.95 46.80 24.36 68.60 1.67 48.47 16 4 H -0.28 -13.41 6.63 99.48 0.66 -12.75 16 5 H -0.31 -15.90 7.11 99.48 0.71 -15.20 16 6 H -0.25 -11.67 6.64 99.48 0.66 -11.01 16 7 C -0.24 -13.41 10.04 84.03 0.84 -12.57 16 8 H 0.05 3.08 8.05 -2.91 -0.02 3.06 16 9 N -0.62 -27.80 2.61 -700.74 -1.83 -29.62 16 10 C 0.12 5.01 4.17 86.21 0.36 5.37 16 11 C -0.14 -4.57 5.86 30.55 0.18 -4.39 16 12 C -0.09 -2.24 4.48 30.46 0.14 -2.10 16 13 C -0.08 -2.16 0.68 -51.88 -0.04 -2.20 16 14 C -0.12 -1.83 6.29 31.39 0.20 -1.64 16 15 C 0.10 1.37 6.92 86.57 0.60 1.97 16 16 N -0.62 -14.66 3.32 -808.25 -2.68 -17.34 16 17 C 0.53 12.88 7.91 87.66 0.69 13.58 16 18 O -0.59 -20.49 16.25 -3.05 -0.05 -20.54 16 19 C -0.13 -1.72 4.44 29.85 0.13 -1.59 16 20 C -0.15 -2.14 4.55 30.59 0.14 -2.00 16 21 C 0.46 6.57 3.16 71.98 0.23 6.80 16 22 F -0.19 -2.77 16.80 44.97 0.76 -2.01 16 23 F -0.19 -3.25 17.32 44.97 0.78 -2.47 16 24 F -0.18 -2.64 16.80 44.97 0.76 -1.88 16 25 C 0.13 4.10 5.79 86.35 0.50 4.60 16 26 C 0.16 5.44 4.90 86.16 0.42 5.86 16 27 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.04 1.91 4.46 -2.39 -0.01 1.90 16 29 H 0.04 1.48 7.11 -2.39 -0.02 1.46 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 1.61 6.21 -2.39 -0.01 1.60 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.15 7.70 -2.39 -0.02 1.13 16 35 H 0.10 1.31 7.70 -2.39 -0.02 1.29 16 36 H 0.12 0.78 7.31 -2.38 -0.02 0.76 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.13 1.10 7.61 -2.39 -0.02 1.08 16 39 H 0.13 1.20 7.80 -2.39 -0.02 1.18 16 40 H 0.11 1.78 8.10 -2.38 -0.02 1.76 16 41 H 0.12 1.75 8.10 -2.39 -0.02 1.73 16 42 H 0.05 1.78 7.73 -2.39 -0.02 1.77 16 43 H 0.05 2.02 5.63 -2.38 -0.01 2.01 16 44 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 2.01 7.76 -2.39 -0.02 1.99 16 Total: -1.00 -75.16 356.50 5.45 -69.71 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.91 Total: 6.81 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 4.84 Total: 9.83 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -4.21 Total: -107.92 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 2.29 Total: -6.37 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.67 Total: 48.47 kcal Total: -75.16 5.45 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499566706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.476 kcal (2) G-P(sol) polarization free energy of solvation -75.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds