Wall clock time and date at job start Tue Mar 31 2020 21:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48501 * 109.47132 * 269.99433 * 3 2 1 5 5 H 1.48496 * 109.47559 * 29.99677 * 3 2 1 6 6 H 1.48510 * 109.47144 * 149.99801 * 3 2 1 7 7 C 1.38812 * 120.00532 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99835 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00647 * 180.02562 * 7 2 1 10 10 C 1.46492 * 120.00585 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47717 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47350 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00097 * 270.00009 * 12 11 10 14 14 C 1.53005 * 109.47015 * 264.93531 * 13 12 11 15 15 O 1.42903 * 109.46714 * 65.00322 * 14 13 12 16 16 C 1.34784 * 120.00049 * 89.99900 * 12 11 10 17 17 O 1.21283 * 119.99884 * 5.09193 * 16 12 11 18 18 C 1.50699 * 120.00084 * 185.08741 * 16 12 11 19 19 H 1.09000 * 109.67944 * 314.72012 * 18 16 12 20 20 C 1.53391 * 109.68963 * 75.32079 * 18 16 12 21 21 C 1.53065 * 108.31341 * 184.47025 * 20 18 16 22 22 C 1.50770 * 109.65193 * 311.74931 * 21 20 18 23 23 C 1.38509 * 118.76683 * 197.79952 * 22 21 20 24 24 C 1.38101 * 120.31276 * 180.16673 * 23 22 21 25 25 C 1.38289 * 119.98749 * 359.97438 * 24 23 22 26 26 C 1.37969 * 119.95832 * 359.93596 * 25 24 23 27 27 C 1.38372 * 121.40419 * 17.84153 * 22 21 20 28 28 O 1.35846 * 121.80236 * 359.48925 * 27 22 21 29 29 H 0.96994 * 120.00294 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99731 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47279 * 59.99783 * 10 9 7 32 32 H 1.09000 * 109.47313 * 300.00183 * 10 9 7 33 33 H 1.09004 * 109.47019 * 59.99506 * 11 10 9 34 34 H 1.09000 * 109.46782 * 300.00390 * 11 10 9 35 35 H 1.08999 * 109.47281 * 24.93740 * 13 12 11 36 36 H 1.09002 * 109.47206 * 144.94122 * 13 12 11 37 37 H 1.09001 * 109.46988 * 184.99582 * 14 13 12 38 38 H 1.09001 * 109.47429 * 305.00342 * 14 13 12 39 39 H 0.96704 * 113.99733 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.72355 * 64.74450 * 20 18 16 41 41 H 1.08998 * 109.66019 * 304.16239 * 20 18 16 42 42 H 1.08997 * 109.43466 * 191.69840 * 21 20 18 43 43 H 1.09002 * 109.43306 * 71.78915 * 21 20 18 44 44 H 1.07996 * 119.84072 * 0.14527 * 23 22 21 45 45 H 1.08002 * 120.00703 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.02338 * 179.91192 * 25 24 23 47 47 H 1.07995 * 119.89391 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6165 -2.1912 0.0024 12 7 6.3489 -3.4598 0.0030 13 6 6.7141 -4.0942 1.2720 14 6 8.1408 -3.6921 1.6512 15 8 8.1882 -2.2863 1.9039 16 6 6.6869 -4.0434 -1.1640 17 8 6.4671 -3.4748 -2.2124 18 6 7.3380 -5.4025 -1.1660 19 1 8.1246 -5.4338 -0.4122 20 6 6.2879 -6.4791 -0.8641 21 6 6.9997 -7.8303 -0.7628 22 6 7.9208 -8.0079 -1.9432 23 6 8.3713 -9.2809 -2.2515 24 6 9.2187 -9.4797 -3.3237 25 6 9.6209 -8.4049 -4.0953 26 6 9.1740 -7.1349 -3.7941 27 6 8.3199 -6.9309 -2.7148 28 8 7.8952 -5.6671 -2.4542 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0014 31 1 3.8493 -3.0422 -0.8891 32 1 3.8486 -3.0425 0.8908 33 1 5.8791 -1.6199 0.8928 34 1 5.8804 -1.6191 -0.8872 35 1 6.0256 -3.7693 2.0520 36 1 6.6581 -5.1776 1.1660 37 1 8.4446 -4.2327 2.5476 38 1 8.8173 -3.9370 0.8323 39 1 9.0646 -1.9604 2.1508 40 1 5.5520 -6.5108 -1.6677 41 1 5.7921 -6.2533 0.0799 42 1 6.2597 -8.6306 -0.7565 43 1 7.5804 -7.8661 0.1589 44 1 8.0586 -10.1219 -1.6505 45 1 9.5673 -10.4744 -3.5594 46 1 10.2848 -8.5596 -4.9331 47 1 9.4891 -6.2963 -4.3972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501500910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:30 Heat of formation + Delta-G solvation = -72.201589 kcal Electronic energy + Delta-G solvation = -29171.762459 eV Core-core repulsion = 25127.603740 eV Total energy + Delta-G solvation = -4044.158719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.84 seconds Orbital eigenvalues (eV) -41.32920 -39.80147 -37.72763 -37.23234 -35.75151 -34.91434 -34.28678 -31.85480 -31.03785 -30.49471 -29.78083 -28.10420 -26.41712 -24.24625 -23.49633 -23.24317 -22.77734 -21.44250 -20.50711 -19.36602 -18.43098 -17.84115 -17.54122 -17.17841 -17.00398 -16.13409 -15.73343 -15.48646 -14.90148 -14.83117 -14.58336 -14.41958 -14.34991 -13.97801 -13.87068 -13.71788 -13.55615 -13.42906 -13.15271 -12.98201 -12.60735 -12.53395 -12.11168 -11.84601 -11.82129 -11.54952 -11.48732 -11.32607 -11.07662 -11.04108 -10.78362 -10.68640 -10.32723 -10.12655 -9.70396 -9.56246 -9.10640 -8.85864 -8.65731 -8.44105 -7.20724 -5.72989 -3.08956 0.99820 1.12963 2.33061 2.50663 3.29045 3.42542 3.45672 3.46503 3.49931 3.89230 4.06910 4.15709 4.36243 4.42280 4.49033 4.63771 4.74439 4.74683 4.78535 4.85219 4.90443 4.98388 5.07682 5.13482 5.16772 5.23133 5.37113 5.42990 5.49928 5.54305 5.62145 5.67174 5.69082 5.75090 5.79068 5.98474 6.06226 6.13967 6.22330 6.37937 6.47939 6.64321 6.81619 7.13236 7.28816 7.39591 8.01512 8.11025 8.45392 9.24076 9.96480 10.15972 11.45321 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.002673 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.217407 B =10473.105874 C =11104.213721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.753 5.753 10 C 0.146 3.854 11 C 0.110 3.890 12 N -0.594 5.594 13 C 0.098 3.902 14 C 0.056 3.944 15 O -0.562 6.562 16 C 0.519 3.481 17 O -0.506 6.506 18 C 0.077 3.923 19 H 0.092 0.908 20 C -0.154 4.154 21 C -0.075 4.075 22 C -0.164 4.164 23 C -0.084 4.084 24 C -0.155 4.155 25 C -0.088 4.088 26 C -0.146 4.146 27 C 0.135 3.865 28 O -0.288 6.288 29 H 0.259 0.741 30 H 0.362 0.638 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.378 0.622 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.128 0.872 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.837 -20.469 1.979 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.399 5.399 10 C 0.018 3.982 11 C -0.012 4.012 12 N -0.328 5.328 13 C -0.026 4.026 14 C -0.023 4.023 15 O -0.367 6.367 16 C 0.304 3.696 17 O -0.379 6.379 18 C 0.017 3.983 19 H 0.109 0.891 20 C -0.192 4.192 21 C -0.112 4.112 22 C -0.164 4.164 23 C -0.102 4.102 24 C -0.173 4.173 25 C -0.106 4.106 26 C -0.165 4.165 27 C 0.090 3.910 28 O -0.201 6.201 29 H 0.069 0.931 30 H 0.194 0.806 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.225 0.775 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 23.830 -20.105 1.127 31.198 hybrid contribution 1.104 1.023 0.366 1.549 sum 24.933 -19.082 1.494 31.433 Atomic orbital electron populations 1.69700 1.05097 1.25840 1.57628 1.24666 0.95268 0.97260 1.01976 0.86526 0.79201 0.84809 0.77904 1.20971 1.21712 1.20219 1.19019 0.80381 0.94767 1.43034 0.89274 1.42542 1.04088 1.01981 1.91257 1.20904 0.88792 0.89763 0.98751 1.21771 0.91924 0.83634 1.03911 1.47605 1.56495 1.24137 1.04549 1.21902 0.95725 0.97872 0.87093 1.22729 0.97384 0.83096 0.99126 1.86579 1.35812 1.22337 1.91951 1.19870 0.79432 0.86061 0.84240 1.90776 1.52531 1.63787 1.30800 1.22313 0.96586 0.94237 0.85153 0.89052 1.22290 0.98109 0.93808 1.04958 1.20495 0.97378 0.97452 0.95847 1.19846 1.02804 0.93340 1.00454 1.20889 0.96711 0.95584 0.97012 1.21024 1.00406 0.99067 0.96786 1.20940 0.98863 0.91675 0.99091 1.20638 0.99053 0.98359 0.98416 1.18780 0.93828 0.83127 0.95275 1.86085 1.75312 1.25963 1.32752 0.93056 0.80580 0.95342 0.95637 0.89428 0.89825 0.88159 0.88943 0.92400 0.93754 0.77480 0.89133 0.88602 0.89235 0.90114 0.85762 0.85889 0.85384 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.10 13.97 55.49 0.78 -29.32 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 22.84 27.74 -169.99 -4.71 18.12 16 4 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 N -0.75 -18.91 5.41 -59.91 -0.32 -19.24 16 10 C 0.15 3.02 6.58 -4.05 -0.03 2.99 16 11 C 0.11 1.87 5.45 -4.05 -0.02 1.85 16 12 N -0.59 -8.11 2.43 -173.69 -0.42 -8.53 16 13 C 0.10 0.90 5.36 -4.04 -0.02 0.87 16 14 C 0.06 0.43 7.16 37.16 0.27 0.69 16 15 O -0.56 -5.44 13.05 -35.23 -0.46 -5.90 16 16 C 0.52 7.89 6.95 -10.98 -0.08 7.82 16 17 O -0.51 -10.24 16.13 -13.83 -0.22 -10.46 16 18 C 0.08 0.88 2.35 -27.68 -0.06 0.82 16 19 H 0.09 0.80 6.17 -51.93 -0.32 0.47 16 20 C -0.15 -1.44 5.14 -26.50 -0.14 -1.57 16 21 C -0.07 -0.54 5.86 -27.82 -0.16 -0.71 16 22 C -0.16 -1.54 5.75 -104.44 -0.60 -2.15 16 23 C -0.08 -0.66 9.67 -39.53 -0.38 -1.05 16 24 C -0.15 -1.18 10.04 -39.61 -0.40 -1.57 16 25 C -0.09 -0.72 10.04 -39.66 -0.40 -1.12 16 26 C -0.15 -1.52 9.94 -39.34 -0.39 -1.91 16 27 C 0.14 1.58 6.47 -39.20 -0.25 1.33 16 28 O -0.29 -4.00 9.50 -38.64 -0.37 -4.37 16 29 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 30 H 0.36 8.84 5.53 -40.82 -0.23 8.61 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.44 7.60 -51.93 -0.39 1.04 16 34 H 0.08 1.59 7.36 -51.93 -0.38 1.21 16 35 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 36 H 0.09 0.58 4.84 -51.93 -0.25 0.33 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.04 0.33 7.07 -51.93 -0.37 -0.04 16 39 H 0.38 2.01 9.12 45.56 0.42 2.43 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 0.72 6.22 -51.93 -0.32 0.39 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -38.70 381.07 -9.00 -47.69 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.09 Total: 7.24 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.92 Total: -0.98 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.03 Total: -57.09 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.05 Total: -20.73 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.70 -9.00 -47.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501500910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.507 kcal (2) G-P(sol) polarization free energy of solvation -38.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.84 seconds