Wall clock time and date at job start Tue Mar 31 2020 21:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48501 * 109.47132 * 269.99433 * 3 2 1 5 5 H 1.48496 * 109.47559 * 29.99677 * 3 2 1 6 6 H 1.48510 * 109.47144 * 149.99801 * 3 2 1 7 7 C 1.38812 * 120.00532 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99835 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00647 * 180.02562 * 7 2 1 10 10 C 1.46492 * 120.00585 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47717 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47350 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00097 * 270.00009 * 12 11 10 14 14 C 1.53005 * 109.47015 * 264.93531 * 13 12 11 15 15 O 1.42903 * 109.46714 * 65.00322 * 14 13 12 16 16 C 1.34784 * 120.00049 * 89.99900 * 12 11 10 17 17 O 1.21283 * 119.99884 * 5.09193 * 16 12 11 18 18 C 1.50699 * 120.00084 * 185.08741 * 16 12 11 19 19 H 1.09000 * 109.67944 * 314.72012 * 18 16 12 20 20 C 1.53391 * 109.68963 * 75.32079 * 18 16 12 21 21 C 1.53065 * 108.31341 * 184.47025 * 20 18 16 22 22 C 1.50770 * 109.65193 * 311.74931 * 21 20 18 23 23 C 1.38509 * 118.76683 * 197.79952 * 22 21 20 24 24 C 1.38101 * 120.31276 * 180.16673 * 23 22 21 25 25 C 1.38289 * 119.98749 * 359.97438 * 24 23 22 26 26 C 1.37969 * 119.95832 * 359.93596 * 25 24 23 27 27 C 1.38372 * 121.40419 * 17.84153 * 22 21 20 28 28 O 1.35846 * 121.80236 * 359.48925 * 27 22 21 29 29 H 0.96994 * 120.00294 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99731 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47279 * 59.99783 * 10 9 7 32 32 H 1.09000 * 109.47313 * 300.00183 * 10 9 7 33 33 H 1.09004 * 109.47019 * 59.99506 * 11 10 9 34 34 H 1.09000 * 109.46782 * 300.00390 * 11 10 9 35 35 H 1.08999 * 109.47281 * 24.93740 * 13 12 11 36 36 H 1.09002 * 109.47206 * 144.94122 * 13 12 11 37 37 H 1.09001 * 109.46988 * 184.99582 * 14 13 12 38 38 H 1.09001 * 109.47429 * 305.00342 * 14 13 12 39 39 H 0.96704 * 113.99733 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.72355 * 64.74450 * 20 18 16 41 41 H 1.08998 * 109.66019 * 304.16239 * 20 18 16 42 42 H 1.08997 * 109.43466 * 191.69840 * 21 20 18 43 43 H 1.09002 * 109.43306 * 71.78915 * 21 20 18 44 44 H 1.07996 * 119.84072 * 0.14527 * 23 22 21 45 45 H 1.08002 * 120.00703 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.02338 * 179.91192 * 25 24 23 47 47 H 1.07995 * 119.89391 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6165 -2.1912 0.0024 12 7 6.3489 -3.4598 0.0030 13 6 6.7141 -4.0942 1.2720 14 6 8.1408 -3.6921 1.6512 15 8 8.1882 -2.2863 1.9039 16 6 6.6869 -4.0434 -1.1640 17 8 6.4671 -3.4748 -2.2124 18 6 7.3380 -5.4025 -1.1660 19 1 8.1246 -5.4338 -0.4122 20 6 6.2879 -6.4791 -0.8641 21 6 6.9997 -7.8303 -0.7628 22 6 7.9208 -8.0079 -1.9432 23 6 8.3713 -9.2809 -2.2515 24 6 9.2187 -9.4797 -3.3237 25 6 9.6209 -8.4049 -4.0953 26 6 9.1740 -7.1349 -3.7941 27 6 8.3199 -6.9309 -2.7148 28 8 7.8952 -5.6671 -2.4542 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0014 31 1 3.8493 -3.0422 -0.8891 32 1 3.8486 -3.0425 0.8908 33 1 5.8791 -1.6199 0.8928 34 1 5.8804 -1.6191 -0.8872 35 1 6.0256 -3.7693 2.0520 36 1 6.6581 -5.1776 1.1660 37 1 8.4446 -4.2327 2.5476 38 1 8.8173 -3.9370 0.8323 39 1 9.0646 -1.9604 2.1508 40 1 5.5520 -6.5108 -1.6677 41 1 5.7921 -6.2533 0.0799 42 1 6.2597 -8.6306 -0.7565 43 1 7.5804 -7.8661 0.1589 44 1 8.0586 -10.1219 -1.6505 45 1 9.5673 -10.4744 -3.5594 46 1 10.2848 -8.5596 -4.9331 47 1 9.4891 -6.2963 -4.3972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501500910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:29 Heat of formation + Delta-G solvation = -100.994219 kcal Electronic energy + Delta-G solvation = -29173.011001 eV Core-core repulsion = 25127.603740 eV Total energy + Delta-G solvation = -4045.407261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.19716 -40.79641 -38.50864 -38.08651 -37.23234 -36.13970 -35.31251 -33.74988 -32.13093 -31.15667 -30.88579 -29.34966 -27.47374 -25.26930 -24.92349 -24.01314 -23.45087 -23.27675 -21.30662 -20.48573 -19.66672 -19.17678 -18.56290 -18.08452 -17.82473 -17.21892 -16.78449 -16.43994 -16.20682 -15.93602 -15.58165 -15.54747 -15.39628 -15.15584 -14.99085 -14.80101 -14.66893 -14.59003 -14.17847 -14.04520 -13.68271 -13.45194 -13.36303 -13.05233 -12.88637 -12.78597 -12.56167 -12.45152 -12.25769 -12.23049 -12.10864 -12.01487 -11.85356 -11.47706 -11.04823 -10.94087 -10.84229 -9.84917 -9.72988 -9.39394 -9.15293 -8.07405 -5.43031 0.36692 0.45207 1.29356 1.35359 1.39969 1.41137 1.47322 2.40793 2.45221 2.79251 3.16254 3.23747 3.34304 3.41645 3.65742 3.71012 3.77083 3.78575 4.02264 4.04830 4.14935 4.20452 4.22135 4.27838 4.32308 4.42091 4.47202 4.53236 4.59437 4.60751 4.61904 4.74608 4.88652 4.94897 4.97634 5.00667 5.02591 5.13803 5.33703 5.38893 5.51725 5.60215 5.68402 5.85668 6.15426 6.18761 6.43019 6.93159 6.95273 7.01114 7.74360 7.94884 9.13752 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.002673 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.217407 B =10473.105874 C =11104.213721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.240 4.240 8 H 0.055 0.945 9 N -0.755 5.755 10 C 0.151 3.849 11 C 0.126 3.874 12 N -0.587 5.587 13 C 0.085 3.915 14 C 0.056 3.944 15 O -0.592 6.592 16 C 0.512 3.488 17 O -0.571 6.571 18 C 0.083 3.917 19 H 0.126 0.874 20 C -0.151 4.151 21 C -0.069 4.069 22 C -0.170 4.170 23 C -0.085 4.085 24 C -0.153 4.153 25 C -0.091 4.091 26 C -0.170 4.170 27 C 0.101 3.899 28 O -0.325 6.325 29 H 0.260 0.740 30 H 0.367 0.633 31 H 0.003 0.997 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.395 0.605 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.149 0.851 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.551 -22.557 4.141 35.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.783 3.217 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.371 4.371 8 H 0.073 0.927 9 N -0.402 5.402 10 C 0.023 3.977 11 C 0.003 3.997 12 N -0.320 5.320 13 C -0.036 4.036 14 C -0.022 4.022 15 O -0.400 6.400 16 C 0.300 3.700 17 O -0.449 6.449 18 C 0.024 3.976 19 H 0.143 0.857 20 C -0.189 4.189 21 C -0.106 4.106 22 C -0.171 4.171 23 C -0.103 4.103 24 C -0.171 4.171 25 C -0.109 4.109 26 C -0.189 4.189 27 C 0.057 3.943 28 O -0.239 6.239 29 H 0.069 0.931 30 H 0.200 0.800 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.245 0.755 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.172 0.828 45 H 0.169 0.831 46 H 0.167 0.833 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 26.614 -22.246 3.343 34.848 hybrid contribution 0.257 1.526 -0.343 1.585 sum 26.871 -20.720 2.999 34.064 Atomic orbital electron populations 1.69875 1.07080 1.26928 1.59194 1.25535 0.96225 1.01392 1.02132 0.85391 0.78905 0.79349 0.78073 1.20874 1.21439 1.17199 1.18978 0.82307 0.93635 1.42160 0.92660 1.42523 1.02731 1.03828 1.91093 1.20968 0.90925 0.87858 0.97935 1.21362 0.89666 0.85397 1.03323 1.47659 1.55261 1.22947 1.06139 1.22373 0.97046 0.99593 0.84566 1.22803 0.95900 0.82683 1.00838 1.86517 1.37638 1.23639 1.92200 1.20698 0.78589 0.87192 0.83551 1.90737 1.55363 1.65651 1.33163 1.22380 0.97788 0.92051 0.85429 0.85673 1.22311 0.97185 0.94630 1.04763 1.20594 0.97530 0.96172 0.96275 1.20157 1.02876 0.93238 1.00797 1.21276 0.96101 0.95714 0.97200 1.21436 0.99524 0.99994 0.96099 1.21235 0.98854 0.90964 0.99819 1.20816 1.00018 0.99290 0.98746 1.19103 0.95429 0.82989 0.96778 1.86021 1.76128 1.27704 1.34062 0.93094 0.79954 0.97862 0.94228 0.88014 0.92243 0.88141 0.85594 0.88630 0.93594 0.75507 0.92192 0.86462 0.87472 0.86861 0.82806 0.83109 0.83298 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.68 13.97 21.65 0.30 -64.38 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 47.27 27.74 68.60 1.90 49.18 16 4 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 7 C -0.24 -14.50 10.47 84.03 0.88 -13.62 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 9 N -0.76 -38.19 5.41 -343.47 -1.86 -40.04 16 10 C 0.15 6.31 6.58 86.38 0.57 6.88 16 11 C 0.13 4.30 5.45 86.38 0.47 4.77 16 12 N -0.59 -15.66 2.43 -821.81 -2.00 -17.66 16 13 C 0.09 1.33 5.36 86.38 0.46 1.79 16 14 C 0.06 0.66 7.16 71.98 0.52 1.18 16 15 O -0.59 -9.99 13.05 -148.98 -1.94 -11.94 16 16 C 0.51 15.91 6.95 87.66 0.61 16.52 16 17 O -0.57 -24.66 16.13 15.49 0.25 -24.41 16 18 C 0.08 1.84 2.35 29.98 0.07 1.92 16 19 H 0.13 1.86 6.17 -2.39 -0.01 1.84 16 20 C -0.15 -2.59 5.14 30.75 0.16 -2.43 16 21 C -0.07 -0.77 5.86 29.89 0.18 -0.60 16 22 C -0.17 -2.85 5.75 -19.75 -0.11 -2.97 16 23 C -0.09 -1.07 9.67 22.30 0.22 -0.85 16 24 C -0.15 -1.88 10.04 22.25 0.22 -1.66 16 25 C -0.09 -1.38 10.04 22.22 0.22 -1.16 16 26 C -0.17 -3.64 9.94 22.42 0.22 -3.42 16 27 C 0.10 2.37 6.47 22.52 0.15 2.52 16 28 O -0.32 -9.38 9.50 -73.29 -0.70 -10.08 16 29 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 30 H 0.37 17.63 5.53 -92.71 -0.51 17.12 16 31 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.10 3.21 7.60 -2.39 -0.02 3.19 16 34 H 0.06 2.33 7.36 -2.39 -0.02 2.32 16 35 H 0.10 1.62 8.03 -2.39 -0.02 1.60 16 36 H 0.13 1.07 4.84 -2.39 -0.01 1.06 16 37 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.05 0.54 7.07 -2.39 -0.02 0.52 16 39 H 0.40 3.28 9.12 -74.05 -0.68 2.60 16 40 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.12 1.42 6.22 -2.39 -0.01 1.40 16 42 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 45 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 46 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 47 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -89.97 381.07 1.01 -88.96 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.24 Total: 24.78 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 5.29 Total: 5.60 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -3.55 Total: -122.08 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -2.39 Total: -46.43 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.90 Total: 49.18 kcal Total: -89.97 1.01 -88.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501500910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.035 kcal (2) G-P(sol) polarization free energy of solvation -89.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds