Wall clock time and date at job start Tue Mar 31 2020 20:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00258 * 2 1 4 4 H 1.48499 * 109.47426 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46880 * 300.00090 * 3 2 1 6 6 H 1.48498 * 109.47275 * 59.99730 * 3 2 1 7 7 C 1.38818 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00192 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00360 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.49545 * 59.93566 * 10 9 7 12 12 O 1.42906 * 109.47160 * 305.06463 * 11 10 9 13 13 C 1.53041 * 109.49895 * 179.97438 * 10 9 7 14 14 C 1.53044 * 109.53609 * 58.62007 * 13 10 9 15 15 C 1.53196 * 109.31474 * 61.36341 * 14 13 10 16 16 N 1.46924 * 108.89310 * 305.29357 * 15 14 13 17 17 C 1.34768 * 120.63177 * 233.67508 * 16 15 14 18 18 O 1.21691 * 120.00420 * 172.63475 * 17 16 15 19 19 C 1.46661 * 119.99867 * 352.62786 * 17 16 15 20 20 O 1.34937 * 126.00546 * 351.67415 * 19 17 16 21 21 C 1.33946 * 109.37551 * 179.88323 * 20 19 17 22 22 C 1.35136 * 108.75699 * 0.37751 * 21 20 19 23 23 C 1.36475 * 126.00691 * 171.97969 * 19 17 16 24 24 C 1.51074 * 143.66861 * 359.96598 * 23 19 17 25 25 C 1.54364 * 105.24766 * 162.88038 * 24 23 19 26 26 C 1.51146 * 143.44593 * 179.82354 * 22 21 20 27 27 C 1.47205 * 118.55494 * 53.53722 * 16 15 14 28 28 H 0.96997 * 120.00023 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99533 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47234 * 65.06582 * 11 10 9 31 31 H 1.09003 * 109.46669 * 185.06913 * 11 10 9 32 32 H 0.96696 * 113.99895 * 180.02562 * 12 11 10 33 33 H 1.08993 * 109.46132 * 298.60032 * 13 10 9 34 34 H 1.09002 * 109.45942 * 178.63637 * 13 10 9 35 35 H 1.08996 * 109.49919 * 301.40987 * 14 13 10 36 36 H 1.09000 * 109.49689 * 181.31359 * 14 13 10 37 37 H 1.09008 * 109.58163 * 65.14951 * 15 14 13 38 38 H 1.08996 * 109.58874 * 185.43287 * 15 14 13 39 39 H 1.08003 * 125.62354 * 180.10831 * 21 20 19 40 40 H 1.09001 * 110.29334 * 281.78884 * 24 23 19 41 41 H 1.08998 * 110.29458 * 43.90684 * 24 23 19 42 42 H 1.08995 * 110.74284 * 268.11585 * 25 24 23 43 43 H 1.09004 * 110.77386 * 144.73579 * 25 24 23 44 44 H 1.08996 * 110.28705 * 316.06669 * 26 22 21 45 45 H 1.09003 * 110.29092 * 78.08451 * 26 22 21 46 46 H 1.08997 * 109.53931 * 186.67201 * 27 16 15 47 47 H 1.09008 * 109.67862 * 66.36909 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 2.9391 -3.7378 1.2488 12 8 3.7873 -2.5892 1.3085 13 6 1.0641 -4.8205 0.0012 14 6 0.1601 -4.7221 -1.2299 15 6 1.0166 -4.8185 -2.4964 16 7 2.0673 -3.7931 -2.4393 17 6 2.2288 -2.9183 -3.4517 18 8 3.0099 -1.9923 -3.3370 19 6 1.4632 -3.0825 -4.6918 20 8 0.6897 -4.1407 -5.0123 21 6 0.1439 -3.9428 -6.2194 22 6 0.5677 -2.7522 -6.6980 23 6 1.4125 -2.1945 -5.7270 24 6 1.9203 -0.8554 -6.2076 25 6 1.6614 -0.8454 -7.7294 26 6 0.4674 -1.8126 -7.8777 27 6 2.9360 -3.7411 -1.2521 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3880 -0.0002 30 1 2.3084 -3.7703 2.1371 31 1 3.5506 -4.6390 1.2040 32 1 4.3751 -2.5739 2.0761 33 1 0.4545 -4.7769 0.9037 34 1 1.6095 -5.7640 -0.0233 35 1 -0.3670 -3.7682 -1.2189 36 1 -0.5627 -5.5379 -1.2166 37 1 1.4731 -5.8067 -2.5544 38 1 0.3915 -4.6527 -3.3737 39 1 -0.5213 -4.6246 -6.7285 40 1 1.3699 -0.0473 -5.7259 41 1 2.9870 -0.7605 -6.0047 42 1 2.5304 -1.2184 -8.2713 43 1 1.3928 0.1548 -8.0693 44 1 0.5455 -2.3690 -8.8117 45 1 -0.4730 -1.2623 -7.8438 46 1 3.5778 -2.8619 -1.3082 47 1 3.5509 -4.6401 -1.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502580064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:48 Heat of formation + Delta-G solvation = -57.730549 kcal Electronic energy + Delta-G solvation = -31016.225256 eV Core-core repulsion = 26972.694048 eV Total energy + Delta-G solvation = -4043.531208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.90247 -41.08931 -39.20872 -38.30783 -37.13569 -35.55046 -33.98161 -32.59828 -31.67445 -31.46912 -30.42010 -28.44376 -26.71269 -26.52337 -25.56331 -23.90697 -22.97246 -22.52905 -21.33322 -20.38909 -19.74819 -19.22176 -18.04642 -17.78302 -17.62307 -17.34906 -17.03114 -16.49633 -16.10456 -15.92918 -15.69348 -15.52235 -15.19464 -14.99458 -14.79950 -14.49334 -14.23910 -13.96211 -13.72515 -13.69926 -13.53529 -13.23948 -12.95128 -12.79363 -12.71369 -12.63083 -12.49072 -12.12165 -12.09376 -12.05837 -11.91863 -11.68027 -11.36519 -11.34083 -11.18524 -10.82313 -10.56058 -10.26597 -9.72831 -9.40391 -8.80955 -7.81409 -5.01782 0.07962 1.35380 1.36694 1.40872 1.49811 1.62628 2.07849 2.34781 2.63210 3.05670 3.38058 3.59565 3.68100 3.82320 3.88409 3.97515 4.05399 4.09696 4.14255 4.18248 4.21183 4.29612 4.43705 4.54104 4.60571 4.71637 4.73708 4.76344 4.80755 4.81485 4.89962 4.91783 4.99327 5.01685 5.02273 5.09762 5.14792 5.19864 5.29287 5.41420 5.47938 5.49429 5.68914 5.88969 5.92830 6.43089 6.46818 7.13897 7.18360 7.52288 8.21035 8.42979 9.43642 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011200 B = 0.005118 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.381419 B = 5469.147992 C = 6967.273407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.095 4.095 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.311 1.311 6 H -0.294 1.294 7 C -0.155 4.155 8 H 0.083 0.917 9 N -0.710 5.710 10 C 0.173 3.827 11 C 0.076 3.924 12 O -0.572 6.572 13 C -0.108 4.108 14 C -0.126 4.126 15 C 0.097 3.903 16 N -0.587 5.587 17 C 0.587 3.413 18 O -0.565 6.565 19 C -0.086 4.086 20 O -0.149 6.149 21 C 0.016 3.984 22 C -0.228 4.228 23 C -0.135 4.135 24 C -0.067 4.067 25 C -0.107 4.107 26 C -0.040 4.040 27 C 0.113 3.887 28 H 0.238 0.762 29 H 0.369 0.631 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.374 0.626 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.034 0.966 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -16.968 -12.661 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.285 4.285 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.240 1.240 6 H -0.222 1.222 7 C -0.288 4.288 8 H 0.100 0.900 9 N -0.348 5.348 10 C 0.082 3.918 11 C -0.004 4.004 12 O -0.377 6.377 13 C -0.146 4.146 14 C -0.164 4.164 15 C -0.024 4.024 16 N -0.316 5.316 17 C 0.376 3.624 18 O -0.447 6.447 19 C -0.137 4.137 20 O -0.046 6.046 21 C -0.052 4.052 22 C -0.229 4.229 23 C -0.138 4.138 24 C -0.104 4.104 25 C -0.144 4.144 26 C -0.077 4.077 27 C -0.011 4.011 28 H 0.047 0.953 29 H 0.202 0.798 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.221 0.779 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.235 -16.492 -12.923 20.954 hybrid contribution 0.386 1.759 0.989 2.054 sum 0.621 -14.734 -11.934 18.970 Atomic orbital electron populations 1.69780 1.05810 1.24336 1.63716 1.25202 0.96100 0.99864 1.07291 0.85394 0.78325 0.82435 0.75890 1.20305 1.23995 1.22183 1.19666 0.91512 0.84360 1.33281 0.89966 1.42558 1.04788 1.00438 1.87056 1.20462 0.92020 0.87316 0.91989 1.22703 0.92349 0.87757 0.97622 1.86874 1.55586 1.45218 1.50069 1.21651 0.97112 0.97262 0.98586 1.21836 0.98264 1.02309 0.94002 1.22315 0.89107 0.91202 0.99758 1.47870 1.34300 1.32012 1.17460 1.17052 0.81545 0.81716 0.82076 1.90818 1.39836 1.32462 1.81534 1.20961 1.04080 0.91050 0.97579 1.84308 1.49311 1.38526 1.32447 1.24463 0.99111 0.98015 0.83617 1.21773 1.03009 0.97577 1.00517 1.21632 0.99957 0.98382 0.93859 1.20686 1.00557 0.91378 0.97829 1.22390 0.98940 1.01196 0.91920 1.20508 0.99023 0.93823 0.94296 1.22141 0.92696 1.01455 0.84809 0.95290 0.79784 0.94215 0.91360 0.77878 0.91154 0.87635 0.94718 0.87192 0.88189 0.88391 0.72313 0.91807 0.92092 0.89786 0.88442 0.87822 0.89496 0.92756 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.91 13.06 21.65 0.28 -64.62 16 2 C -0.10 -6.06 5.50 84.86 0.47 -5.60 16 3 Si 0.95 53.42 29.55 68.60 2.03 55.45 16 4 H -0.28 -15.32 7.11 99.48 0.71 -14.61 16 5 H -0.31 -18.02 7.11 99.48 0.71 -17.31 16 6 H -0.29 -16.13 7.11 99.48 0.71 -15.43 16 7 C -0.16 -9.22 8.06 84.04 0.68 -8.54 16 8 H 0.08 5.05 5.26 -2.91 -0.02 5.03 16 9 N -0.71 -36.07 4.75 -302.99 -1.44 -37.51 16 10 C 0.17 6.50 0.68 3.68 0.00 6.50 16 11 C 0.08 2.50 6.09 71.98 0.44 2.94 16 12 O -0.57 -22.16 10.04 -148.98 -1.50 -23.66 16 13 C -0.11 -2.98 4.76 30.62 0.15 -2.83 16 14 C -0.13 -3.52 5.91 30.67 0.18 -3.34 16 15 C 0.10 2.73 6.09 86.36 0.53 3.25 16 16 N -0.59 -22.47 2.91 -822.92 -2.39 -24.86 16 17 C 0.59 26.50 7.65 86.44 0.66 27.16 16 18 O -0.57 -30.84 16.32 -4.32 -0.07 -30.91 16 19 C -0.09 -3.24 6.75 24.06 0.16 -3.08 16 20 O -0.15 -4.21 7.28 -5.42 -0.04 -4.25 16 21 C 0.02 0.33 12.08 67.10 0.81 1.14 16 22 C -0.23 -5.71 6.93 -19.94 -0.14 -5.85 16 23 C -0.14 -4.75 6.67 -19.66 -0.13 -4.88 16 24 C -0.07 -2.20 6.76 30.43 0.21 -1.99 16 25 C -0.11 -2.24 7.06 31.52 0.22 -2.02 16 26 C -0.04 -0.73 6.76 30.46 0.21 -0.52 16 27 C 0.11 4.39 4.94 86.31 0.43 4.81 16 28 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.37 20.41 6.42 -92.70 -0.60 19.82 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.37 10.46 9.12 -74.06 -0.68 9.79 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.03 1.30 6.75 -2.39 -0.02 1.28 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.10 2.76 4.26 -17.38 -0.07 2.69 16 39 H 0.26 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.05 2.67 5.84 -2.39 -0.01 2.66 16 47 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -89.74 367.80 1.42 -88.32 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: -0.32 Total: 34.89 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 4.86 Total: 7.16 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -3.55 Total: -127.00 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -1.61 Total: -58.82 kcal Atomic # 14 Polarization: 53.42 SS G_CDS: 2.03 Total: 55.45 kcal Total: -89.74 1.42 -88.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502580064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.592 kcal (2) G-P(sol) polarization free energy of solvation -89.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds