Wall clock time and date at job start Tue Mar 31 2020 22:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00340 * 2 1 4 4 H 1.48503 * 109.47000 * 270.00151 * 3 2 1 5 5 H 1.48496 * 109.47085 * 30.00424 * 3 2 1 6 6 H 1.48504 * 109.47038 * 150.00461 * 3 2 1 7 7 C 1.38814 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00471 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99971 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00088 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.47169 * 325.00087 * 10 9 7 12 12 C 1.52999 * 109.47084 * 84.99765 * 10 9 7 13 13 O 1.42903 * 109.47256 * 65.00345 * 12 10 9 14 14 C 1.53002 * 109.46869 * 204.99776 * 10 9 7 15 15 N 1.46501 * 109.47048 * 55.00287 * 14 10 9 16 16 C 1.34771 * 119.99616 * 179.97438 * 15 14 10 17 17 O 1.21281 * 120.00412 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99918 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.87359 * 275.44908 * 18 16 15 20 20 C 1.38232 * 119.99639 * 269.02499 * 19 18 16 21 21 C 1.38238 * 119.99886 * 179.76078 * 20 19 18 22 22 C 1.38240 * 119.99504 * 0.50794 * 21 20 19 23 23 C 1.38227 * 120.00169 * 359.74622 * 22 21 20 24 24 C 1.38231 * 119.99832 * 89.29449 * 19 18 16 25 25 C 1.54105 * 109.87885 * 154.28274 * 18 16 15 26 26 C 1.54810 * 104.18760 * 242.60533 * 25 18 16 27 27 C 1.54996 * 102.09597 * 20.88483 * 26 25 18 28 28 O 1.43750 * 109.87508 * 36.45581 * 18 16 15 29 29 H 0.97003 * 119.99738 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99602 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47286 * 304.99906 * 12 10 9 32 32 H 1.09008 * 109.47201 * 184.99686 * 12 10 9 33 33 H 0.96700 * 114.00311 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.46784 * 175.00065 * 14 10 9 35 35 H 1.08997 * 109.47101 * 294.99872 * 14 10 9 36 36 H 0.96996 * 119.99912 * 359.97438 * 15 14 10 37 37 H 1.07998 * 120.00376 * 359.97438 * 20 19 18 38 38 H 1.07995 * 120.00181 * 180.22956 * 21 20 19 39 39 H 1.08003 * 119.99471 * 179.72136 * 22 21 20 40 40 H 1.08003 * 120.00167 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00335 * 0.02562 * 24 19 18 42 42 H 1.08994 * 110.48580 * 1.28785 * 25 18 16 43 43 H 1.09002 * 110.48255 * 123.93270 * 25 18 16 44 44 H 1.09001 * 110.91129 * 262.68312 * 26 25 18 45 45 H 1.08999 * 110.90796 * 139.07880 * 26 25 18 46 46 H 1.08988 * 110.62232 * 204.47444 * 27 26 25 47 47 H 1.08998 * 110.75271 * 81.53594 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1119 -2.4711 -0.0011 11 1 3.5648 -3.2064 0.5887 12 6 4.2574 -2.9760 -1.4380 13 8 5.0734 -2.0685 -2.1815 14 6 5.4994 -2.2590 0.6079 15 7 5.3624 -1.6636 1.9395 16 6 6.4606 -1.3863 2.6698 17 8 7.5623 -1.6300 2.2250 18 6 6.3198 -0.7733 4.0393 19 6 6.1925 0.7236 3.9199 20 6 7.3226 1.5187 3.9599 21 6 7.2064 2.8914 3.8454 22 6 5.9590 3.4697 3.7016 23 6 4.8286 2.6750 3.6669 24 6 4.9453 1.3019 3.7761 25 6 7.5455 -1.1310 4.9021 26 6 6.9584 -1.9608 6.0698 27 6 5.6075 -2.4403 5.4804 28 8 5.1613 -1.3113 4.6988 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0014 31 1 3.2730 -3.0424 -1.9012 32 1 4.7232 -3.9615 -1.4315 33 1 5.2085 -2.3260 -3.1037 34 1 6.0108 -3.2181 0.6897 35 1 6.0783 -1.5918 -0.0306 36 1 4.4813 -1.4689 2.2954 37 1 8.2967 1.0672 4.0770 38 1 8.0896 3.5123 3.8729 39 1 5.8678 4.5425 3.6167 40 1 3.8540 3.1269 3.5549 41 1 4.0620 0.6811 3.7497 42 1 8.2546 -1.7279 4.3286 43 1 8.0236 -0.2269 5.2791 44 1 6.7995 -1.3367 6.9492 45 1 7.6019 -2.8080 6.3069 46 1 4.8973 -2.6600 6.2774 47 1 5.7518 -3.3140 4.8449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507256443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:14 Heat of formation + Delta-G solvation = -82.907034 kcal Electronic energy + Delta-G solvation = -30472.139119 eV Core-core repulsion = 26427.516177 eV Total energy + Delta-G solvation = -4044.622942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -40.98306 -38.73348 -38.21058 -37.16900 -35.04547 -33.60774 -32.63997 -32.09158 -31.36448 -30.73222 -28.98565 -28.10392 -25.64060 -23.83829 -23.21867 -22.93151 -21.92468 -21.08797 -20.16781 -19.58097 -18.04374 -17.57870 -17.16379 -16.88367 -16.46637 -15.70858 -15.60889 -15.01968 -14.84034 -14.69730 -14.38748 -14.29179 -13.81944 -13.63018 -13.49436 -13.31614 -13.13756 -13.00779 -12.80051 -12.64939 -12.32300 -12.07858 -11.87981 -11.59945 -11.38911 -11.27372 -10.98960 -10.89343 -10.86071 -10.82963 -10.70087 -10.57139 -10.09623 -9.63432 -9.52676 -9.41687 -8.99110 -8.83252 -8.71279 -8.63741 -7.33157 -5.81334 -3.17382 1.29280 1.47527 2.76846 3.36974 3.38339 3.44847 3.47500 3.56791 3.86340 4.37099 4.53195 4.57836 4.76714 4.81449 4.82189 4.97993 5.04610 5.05597 5.14420 5.22306 5.29208 5.36677 5.47039 5.50409 5.52596 5.55869 5.63660 5.65786 5.79222 5.81244 5.89940 5.92138 5.93495 5.99357 6.09521 6.21840 6.38709 6.44032 6.48347 6.59322 6.61796 6.71721 6.84844 7.02532 7.85212 7.91827 8.10921 8.37306 8.44431 9.15477 9.88349 10.08407 11.36244 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009723 B = 0.005244 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.106387 B = 5337.739667 C = 6630.782998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.249 4.249 8 H 0.090 0.910 9 N -0.737 5.737 10 C 0.172 3.828 11 H 0.074 0.926 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.113 3.887 15 N -0.700 5.700 16 C 0.508 3.492 17 O -0.546 6.546 18 C 0.134 3.866 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.082 4.082 25 C -0.141 4.141 26 C -0.152 4.152 27 C 0.043 3.957 28 O -0.351 6.351 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.366 0.634 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.414 0.586 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.842 -1.963 10.599 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.709 3.291 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.380 5.380 10 C 0.061 3.939 11 H 0.092 0.908 12 C -0.021 4.021 13 O -0.368 6.368 14 C -0.011 4.011 15 N -0.351 5.351 16 C 0.292 3.708 17 O -0.425 6.425 18 C 0.091 3.909 19 C -0.085 4.085 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.100 4.100 25 C -0.179 4.179 26 C -0.190 4.190 27 C -0.034 4.034 28 O -0.270 6.270 29 H 0.070 0.930 30 H 0.199 0.801 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.211 0.789 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.118 0.882 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.123 -1.817 10.845 18.698 hybrid contribution 0.090 0.909 -0.626 1.107 sum 15.213 -0.908 10.219 18.349 Atomic orbital electron populations 1.69700 1.05113 1.25888 1.57071 1.24615 0.95123 0.97141 1.01612 0.86619 0.79458 0.84987 0.78003 1.21243 1.21816 1.19737 1.19033 0.80385 0.94678 1.43732 0.89186 1.42711 1.03872 1.01752 1.89698 1.20556 0.90425 0.90670 0.92221 0.90804 1.22998 0.93842 0.90371 0.94938 1.86525 1.72374 1.52042 1.25907 1.21642 0.98474 0.98284 0.82696 1.45966 1.09839 1.61814 1.17521 1.20630 0.84797 0.78334 0.87064 1.90651 1.25889 1.53827 1.72144 1.20927 0.87771 0.91420 0.90742 1.19335 0.94322 0.91873 1.02976 1.21005 0.97883 0.93674 0.99815 1.21051 0.97540 0.94540 1.01202 1.21204 0.92709 0.99864 0.99515 1.21229 0.98994 0.93792 0.99756 1.21100 0.97332 0.95121 0.96449 1.23091 0.96838 1.02046 0.95909 1.23147 0.97025 1.00291 0.98529 1.23652 0.95747 0.89316 0.94644 1.88976 1.28885 1.45641 1.63454 0.93048 0.80051 0.92734 0.95157 0.78898 0.91734 0.90622 0.74877 0.85562 0.85925 0.86049 0.85749 0.84976 0.88435 0.89192 0.90239 0.89895 0.88248 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.97 55.49 0.78 -27.73 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 22.18 27.73 -169.99 -4.71 17.47 16 4 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.25 -6.69 10.41 -15.06 -0.16 -6.85 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.74 -16.87 4.31 -53.43 -0.23 -17.10 16 10 C 0.17 3.20 2.84 -67.93 -0.19 3.01 16 11 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 12 C 0.06 1.00 6.86 37.16 0.25 1.26 16 13 O -0.56 -9.60 12.64 -35.23 -0.45 -10.04 16 14 C 0.11 1.99 5.12 -4.04 -0.02 1.97 16 15 N -0.70 -12.33 5.30 -60.29 -0.32 -12.65 16 16 C 0.51 8.76 6.65 -10.99 -0.07 8.68 16 17 O -0.55 -10.49 15.57 5.56 0.09 -10.40 16 18 C 0.13 1.96 0.91 -92.34 -0.08 1.88 16 19 C -0.08 -1.29 4.84 -104.63 -0.51 -1.79 16 20 C -0.11 -1.43 8.74 -39.58 -0.35 -1.77 16 21 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 22 C -0.11 -1.49 10.05 -39.58 -0.40 -1.89 16 23 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 24 C -0.08 -1.33 9.36 -39.58 -0.37 -1.70 16 25 C -0.14 -1.66 5.64 -25.20 -0.14 -1.80 16 26 C -0.15 -1.43 7.15 -24.72 -0.18 -1.61 16 27 C 0.04 0.47 7.66 38.21 0.29 0.76 16 28 O -0.35 -5.03 9.30 -35.23 -0.33 -5.36 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.37 8.78 5.66 -40.82 -0.23 8.54 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.37 4.42 9.12 45.56 0.42 4.84 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.48 7.39 -51.93 -0.38 1.09 16 36 H 0.41 7.58 7.64 -40.82 -0.31 7.27 16 37 H 0.13 1.48 6.44 -52.49 -0.34 1.14 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 41 H 0.13 2.25 7.55 -52.49 -0.40 1.85 16 42 H 0.10 1.23 6.74 -51.93 -0.35 0.88 16 43 H 0.09 0.94 5.78 -51.93 -0.30 0.64 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.89 8.14 -51.94 -0.42 0.47 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -33.69 383.32 -8.34 -42.03 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -6.13 Total: 21.77 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.81 Total: -3.77 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.22 Total: -57.48 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.69 Total: -25.80 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.69 -8.34 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507256443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.873 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds