Wall clock time and date at job start Tue Mar 31 2020 22:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00340 * 2 1 4 4 H 1.48503 * 109.47000 * 270.00151 * 3 2 1 5 5 H 1.48496 * 109.47085 * 30.00424 * 3 2 1 6 6 H 1.48504 * 109.47038 * 150.00461 * 3 2 1 7 7 C 1.38814 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00471 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99971 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00088 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.47169 * 325.00087 * 10 9 7 12 12 C 1.52999 * 109.47084 * 84.99765 * 10 9 7 13 13 O 1.42903 * 109.47256 * 65.00345 * 12 10 9 14 14 C 1.53002 * 109.46869 * 204.99776 * 10 9 7 15 15 N 1.46501 * 109.47048 * 55.00287 * 14 10 9 16 16 C 1.34771 * 119.99616 * 179.97438 * 15 14 10 17 17 O 1.21281 * 120.00412 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99918 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.87359 * 275.44908 * 18 16 15 20 20 C 1.38232 * 119.99639 * 269.02499 * 19 18 16 21 21 C 1.38238 * 119.99886 * 179.76078 * 20 19 18 22 22 C 1.38240 * 119.99504 * 0.50794 * 21 20 19 23 23 C 1.38227 * 120.00169 * 359.74622 * 22 21 20 24 24 C 1.38231 * 119.99832 * 89.29449 * 19 18 16 25 25 C 1.54105 * 109.87885 * 154.28274 * 18 16 15 26 26 C 1.54810 * 104.18760 * 242.60533 * 25 18 16 27 27 C 1.54996 * 102.09597 * 20.88483 * 26 25 18 28 28 O 1.43750 * 109.87508 * 36.45581 * 18 16 15 29 29 H 0.97003 * 119.99738 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99602 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47286 * 304.99906 * 12 10 9 32 32 H 1.09008 * 109.47201 * 184.99686 * 12 10 9 33 33 H 0.96700 * 114.00311 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.46784 * 175.00065 * 14 10 9 35 35 H 1.08997 * 109.47101 * 294.99872 * 14 10 9 36 36 H 0.96996 * 119.99912 * 359.97438 * 15 14 10 37 37 H 1.07998 * 120.00376 * 359.97438 * 20 19 18 38 38 H 1.07995 * 120.00181 * 180.22956 * 21 20 19 39 39 H 1.08003 * 119.99471 * 179.72136 * 22 21 20 40 40 H 1.08003 * 120.00167 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00335 * 0.02562 * 24 19 18 42 42 H 1.08994 * 110.48580 * 1.28785 * 25 18 16 43 43 H 1.09002 * 110.48255 * 123.93270 * 25 18 16 44 44 H 1.09001 * 110.91129 * 262.68312 * 26 25 18 45 45 H 1.08999 * 110.90796 * 139.07880 * 26 25 18 46 46 H 1.08988 * 110.62232 * 204.47444 * 27 26 25 47 47 H 1.08998 * 110.75271 * 81.53594 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1119 -2.4711 -0.0011 11 1 3.5648 -3.2064 0.5887 12 6 4.2574 -2.9760 -1.4380 13 8 5.0734 -2.0685 -2.1815 14 6 5.4994 -2.2590 0.6079 15 7 5.3624 -1.6636 1.9395 16 6 6.4606 -1.3863 2.6698 17 8 7.5623 -1.6300 2.2250 18 6 6.3198 -0.7733 4.0393 19 6 6.1925 0.7236 3.9199 20 6 7.3226 1.5187 3.9599 21 6 7.2064 2.8914 3.8454 22 6 5.9590 3.4697 3.7016 23 6 4.8286 2.6750 3.6669 24 6 4.9453 1.3019 3.7761 25 6 7.5455 -1.1310 4.9021 26 6 6.9584 -1.9608 6.0698 27 6 5.6075 -2.4403 5.4804 28 8 5.1613 -1.3113 4.6988 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0014 31 1 3.2730 -3.0424 -1.9012 32 1 4.7232 -3.9615 -1.4315 33 1 5.2085 -2.3260 -3.1037 34 1 6.0108 -3.2181 0.6897 35 1 6.0783 -1.5918 -0.0306 36 1 4.4813 -1.4689 2.2954 37 1 8.2967 1.0672 4.0770 38 1 8.0896 3.5123 3.8729 39 1 5.8678 4.5425 3.6167 40 1 3.8540 3.1269 3.5549 41 1 4.0620 0.6811 3.7497 42 1 8.2546 -1.7279 4.3286 43 1 8.0236 -0.2269 5.2791 44 1 6.7995 -1.3367 6.9492 45 1 7.6019 -2.8080 6.3069 46 1 4.8973 -2.6600 6.2774 47 1 5.7518 -3.3140 4.8449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507256443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:07 Heat of formation + Delta-G solvation = -108.529612 kcal Electronic energy + Delta-G solvation = -30473.250198 eV Core-core repulsion = 26427.516177 eV Total energy + Delta-G solvation = -4045.734020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.81 seconds Orbital eigenvalues (eV) -42.10513 -39.96045 -39.31225 -38.61436 -36.50709 -35.32356 -33.67911 -33.52026 -32.81423 -31.76442 -30.68163 -29.16822 -26.92853 -25.39165 -24.74159 -23.91916 -23.02957 -22.07624 -21.73938 -20.83754 -19.88373 -18.70316 -18.43903 -18.30688 -17.59016 -17.00714 -16.79979 -16.49012 -16.10484 -15.86387 -15.76256 -15.63883 -15.08350 -15.05021 -14.74358 -14.68281 -14.48413 -14.32826 -14.23024 -14.01499 -13.69189 -13.24259 -13.07778 -12.89081 -12.77310 -12.65769 -12.39770 -12.25334 -12.21987 -11.92979 -11.91520 -11.80741 -11.80494 -11.57304 -11.08276 -10.78065 -10.61632 -10.11510 -9.90793 -9.75984 -9.34692 -8.02887 -5.34644 0.22452 0.40425 1.34865 1.37575 1.43753 1.44973 2.11650 2.46200 2.58955 2.78285 3.28890 3.40096 3.44965 3.58358 3.62875 3.66303 3.89295 3.96579 4.01649 4.08000 4.10111 4.21997 4.33387 4.35535 4.48276 4.51455 4.56019 4.59993 4.64734 4.74432 4.77861 4.88055 4.89802 4.95055 4.99391 5.05080 5.10949 5.12747 5.36692 5.44523 5.45979 5.53324 5.74745 5.76225 5.99151 6.20466 6.45935 7.00307 7.06766 7.07071 7.81184 8.00141 9.17947 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009723 B = 0.005244 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.106387 B = 5337.739667 C = 6630.782998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.050 4.050 3 Si 0.940 3.060 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.220 4.220 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.165 3.835 11 H 0.079 0.921 12 C 0.067 3.933 13 O -0.584 6.584 14 C 0.125 3.875 15 N -0.705 5.705 16 C 0.505 3.495 17 O -0.568 6.568 18 C 0.136 3.864 19 C -0.099 4.099 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.140 4.140 24 C -0.107 4.107 25 C -0.139 4.139 26 C -0.141 4.141 27 C 0.032 3.968 28 O -0.371 6.371 29 H 0.256 0.744 30 H 0.362 0.638 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.388 0.612 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.410 0.590 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.675 -1.734 11.511 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.243 4.243 3 Si 0.770 3.230 4 H -0.219 1.219 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.351 4.351 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.057 3.943 11 H 0.097 0.903 12 C -0.013 4.013 13 O -0.391 6.391 14 C 0.000 4.000 15 N -0.355 5.355 16 C 0.290 3.710 17 O -0.448 6.448 18 C 0.093 3.907 19 C -0.099 4.099 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.158 4.158 24 C -0.126 4.126 25 C -0.177 4.177 26 C -0.178 4.178 27 C -0.044 4.044 28 O -0.290 6.290 29 H 0.065 0.935 30 H 0.194 0.806 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.246 0.754 37 H 0.162 0.838 38 H 0.175 0.825 39 H 0.167 0.833 40 H 0.142 0.858 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.122 0.878 44 H 0.110 0.890 45 H 0.123 0.877 46 H 0.136 0.864 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.009 -1.633 11.747 21.563 hybrid contribution -0.744 0.726 -0.930 1.395 sum 17.265 -0.907 10.817 20.394 Atomic orbital electron populations 1.69838 1.06677 1.26300 1.59945 1.25222 0.95757 1.00201 1.03071 0.85630 0.78678 0.81358 0.77383 1.21909 1.22092 1.18494 1.19012 0.82065 0.93530 1.40488 0.91347 1.42685 1.02449 1.03281 1.89797 1.20817 0.90650 0.88867 0.93991 0.90325 1.22780 0.93565 0.91989 0.93008 1.86468 1.72120 1.52688 1.27798 1.21505 0.97303 0.98742 0.82419 1.46040 1.09874 1.62015 1.17570 1.21177 0.84145 0.77660 0.87973 1.90626 1.26469 1.54766 1.72973 1.20929 0.89141 0.91022 0.89614 1.19499 0.94507 0.92365 1.03576 1.21313 0.98019 0.94296 0.99272 1.21485 0.98525 0.94454 0.99295 1.21549 0.92235 1.01150 0.98334 1.21406 1.00058 0.93664 1.00649 1.21064 0.97279 0.95680 0.98538 1.23114 0.95523 1.02927 0.96127 1.23147 0.96059 1.00827 0.97816 1.23917 0.97309 0.88318 0.94859 1.88975 1.29470 1.46710 1.63826 0.93494 0.80571 0.94545 0.91160 0.76328 0.89787 0.92360 0.75430 0.83793 0.82480 0.83304 0.85804 0.87150 0.89340 0.87793 0.89011 0.87658 0.86443 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.57 13.97 21.65 0.30 -61.27 16 2 C -0.05 -2.93 5.50 84.86 0.47 -2.47 16 3 Si 0.94 47.01 27.73 68.60 1.90 48.91 16 4 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 5 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 6 H -0.26 -12.30 6.52 99.48 0.65 -11.65 16 7 C -0.22 -12.03 10.41 84.03 0.87 -11.16 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.98 16 9 N -0.74 -33.80 4.31 -322.95 -1.39 -35.19 16 10 C 0.17 6.03 2.84 44.99 0.13 6.16 16 11 H 0.08 2.80 8.08 -2.39 -0.02 2.78 16 12 C 0.07 2.14 6.86 71.98 0.49 2.64 16 13 O -0.58 -18.79 12.64 -148.98 -1.88 -20.67 16 14 C 0.12 4.25 5.12 86.38 0.44 4.69 16 15 N -0.71 -24.66 5.30 -463.06 -2.46 -27.12 16 16 C 0.50 17.14 6.65 87.66 0.58 17.73 16 17 O -0.57 -21.31 15.57 -3.03 -0.05 -21.36 16 18 C 0.14 3.87 0.91 -11.91 -0.01 3.86 16 19 C -0.10 -2.94 4.84 -19.87 -0.10 -3.03 16 20 C -0.11 -2.76 8.74 22.27 0.19 -2.56 16 21 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 22 C -0.11 -2.73 10.05 22.27 0.22 -2.50 16 23 C -0.14 -4.13 10.05 22.27 0.22 -3.91 16 24 C -0.11 -3.52 9.36 22.27 0.21 -3.31 16 25 C -0.14 -3.01 5.64 31.59 0.18 -2.84 16 26 C -0.14 -2.30 7.15 31.90 0.23 -2.07 16 27 C 0.03 0.65 7.66 72.67 0.56 1.20 16 28 O -0.37 -10.55 9.30 -148.98 -1.39 -11.94 16 29 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.36 17.24 5.66 -92.71 -0.52 16.72 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.39 8.53 9.12 -74.06 -0.68 7.86 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 2.22 7.39 -2.39 -0.02 2.20 16 36 H 0.41 15.21 7.64 -92.71 -0.71 14.50 16 37 H 0.14 2.97 6.44 -2.91 -0.02 2.96 16 38 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.11 3.97 7.55 -2.91 -0.02 3.95 16 42 H 0.09 2.09 6.74 -2.39 -0.02 2.07 16 43 H 0.10 1.92 5.78 -2.39 -0.01 1.91 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.10 383.32 -0.99 -75.10 By element: Atomic # 1 Polarization: 54.44 SS G_CDS: -0.95 Total: 53.49 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.92 Total: 0.04 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -3.55 Total: -123.58 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -3.32 Total: -53.96 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.90 Total: 48.91 kcal Total: -74.10 -0.99 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507256443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.432 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.81 seconds