Wall clock time and date at job start Tue Mar 31 2020 22:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.46786 * 35.00337 * 10 9 7 12 12 C 1.53002 * 109.47505 * 275.00534 * 10 9 7 13 13 O 1.42904 * 109.46665 * 294.99774 * 12 10 9 14 14 C 1.53000 * 109.47284 * 155.00020 * 10 9 7 15 15 N 1.46500 * 109.47051 * 305.00478 * 14 10 9 16 16 C 1.34777 * 119.99975 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00012 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99975 * 180.02562 * 16 15 14 19 19 C 1.50693 * 109.82725 * 84.11194 * 18 16 15 20 20 C 1.38231 * 120.00680 * 90.42884 * 19 18 16 21 21 C 1.38236 * 120.00460 * 179.78977 * 20 19 18 22 22 C 1.38234 * 119.99559 * 0.43709 * 21 20 19 23 23 C 1.38234 * 120.00153 * 359.81261 * 22 21 20 24 24 C 1.38233 * 120.00224 * 359.97438 * 23 22 21 25 25 C 1.54388 * 109.82949 * 204.99667 * 18 16 15 26 26 C 1.55306 * 102.25193 * 98.15143 * 25 18 16 27 27 C 1.54938 * 100.94280 * 34.13483 * 26 25 18 28 28 O 1.43239 * 109.82906 * 323.12501 * 18 16 15 29 29 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47003 * 54.99604 * 12 10 9 32 32 H 1.08990 * 109.47392 * 174.99743 * 12 10 9 33 33 H 0.96701 * 113.99777 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.46938 * 65.00405 * 14 10 9 35 35 H 1.08999 * 109.47081 * 185.00209 * 14 10 9 36 36 H 0.97001 * 120.00380 * 359.97438 * 15 14 10 37 37 H 1.08005 * 119.99765 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00013 * 180.26942 * 21 20 19 39 39 H 1.07999 * 119.99375 * 179.83783 * 22 21 20 40 40 H 1.08004 * 119.99742 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.00119 * 179.97438 * 24 23 22 42 42 H 1.08999 * 110.85059 * 216.34697 * 25 18 16 43 43 H 1.09001 * 110.84643 * 339.96234 * 25 18 16 44 44 H 1.09003 * 111.11910 * 152.05409 * 26 25 18 45 45 H 1.09000 * 111.12757 * 276.17039 * 26 25 18 46 46 H 1.09002 * 110.30975 * 82.46662 * 27 26 25 47 47 H 1.08999 * 110.31048 * 204.63376 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 2.9693 -3.5502 0.5904 12 6 2.4211 -4.0362 -1.4355 13 8 1.2263 -4.2896 -2.1774 14 6 1.1815 -4.7518 0.6124 15 7 0.7358 -4.3346 1.9441 16 6 -0.0526 -5.1465 2.6760 17 8 -0.3935 -6.2224 2.2319 18 6 -0.5115 -4.7170 4.0456 19 6 -1.7380 -3.8498 3.9251 20 6 -2.9955 -4.4234 3.9509 21 6 -4.1206 -3.6274 3.8447 22 6 -3.9881 -2.2587 3.7037 23 6 -2.7305 -1.6856 3.6727 24 6 -1.6055 -2.4811 3.7833 25 6 -0.8310 -5.9595 4.9044 26 6 0.4686 -6.1270 5.7381 27 6 0.8851 -4.6475 5.9338 28 8 0.5348 -3.9933 4.7039 29 1 -0.4849 -0.8401 0.0004 30 1 0.3557 -2.3881 0.0016 31 1 2.9704 -3.2171 -1.8999 32 1 3.0416 -4.9322 -1.4290 33 1 1.3808 -4.5359 -3.0996 34 1 0.3135 -4.9201 -0.0251 35 1 1.7565 -5.6742 0.6941 36 1 1.0087 -3.4742 2.2995 37 1 -3.0989 -5.4932 4.0570 38 1 -5.1031 -4.0752 3.8693 39 1 -4.8671 -1.6371 3.6181 40 1 -2.6271 -0.6162 3.5620 41 1 -0.6230 -2.0334 3.7586 42 1 -1.6868 -5.7731 5.5532 43 1 -1.0031 -6.8325 4.2748 44 1 0.2623 -6.6069 6.6948 45 1 1.2252 -6.6783 5.1799 46 1 0.3365 -4.2069 6.7663 47 1 1.9588 -4.5766 6.1076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507256445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:26 Heat of formation + Delta-G solvation = -88.362783 kcal Electronic energy + Delta-G solvation = -30345.299625 eV Core-core repulsion = 26300.440105 eV Total energy + Delta-G solvation = -4044.859521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.87767 -38.61905 -38.15762 -37.11220 -35.00647 -33.71596 -32.52044 -32.08038 -31.17000 -30.60106 -28.43195 -27.83126 -25.50413 -23.69840 -23.32873 -22.80698 -21.61384 -21.31660 -20.22740 -19.50036 -17.86762 -17.56245 -17.21037 -16.67898 -16.10920 -15.73405 -15.41379 -15.25130 -14.68875 -14.58424 -14.25801 -13.95450 -13.82857 -13.67866 -13.45137 -13.37589 -13.26515 -13.16507 -12.85867 -12.48240 -11.98500 -11.90351 -11.77555 -11.48107 -11.36100 -11.28465 -10.87643 -10.80627 -10.72734 -10.72298 -10.43411 -10.31293 -10.07102 -9.50660 -9.33718 -9.15939 -8.94427 -8.70386 -8.61912 -8.52946 -7.05452 -6.09580 -3.10537 1.42220 1.61326 2.85663 3.49864 3.50559 3.54361 3.56793 3.65510 3.99054 4.36877 4.56142 4.63898 4.77657 4.87948 4.96130 5.07114 5.11061 5.19050 5.24633 5.36663 5.38602 5.48621 5.53091 5.57209 5.59818 5.60249 5.70354 5.79641 5.84935 5.86174 5.97637 5.98439 5.99999 6.11036 6.22875 6.31127 6.42971 6.59049 6.61716 6.69218 6.74541 6.84584 6.96092 7.16619 7.78338 7.95004 8.15117 8.53581 8.76453 9.21058 10.07716 10.23506 11.38163 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.004653 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.684278 B = 6015.699321 C = 7137.526395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.039 4.039 3 Si 1.083 2.917 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.338 4.338 8 H 0.064 0.936 9 N -0.723 5.723 10 C 0.172 3.828 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.562 6.562 14 C 0.115 3.885 15 N -0.696 5.696 16 C 0.520 3.480 17 O -0.549 6.549 18 C 0.139 3.861 19 C -0.099 4.099 20 C -0.107 4.107 21 C -0.128 4.128 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.079 4.079 25 C -0.138 4.138 26 C -0.156 4.156 27 C 0.050 3.950 28 O -0.358 6.358 29 H 0.258 0.742 30 H 0.372 0.628 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.364 0.636 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.414 0.586 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -10.896 10.941 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.238 4.238 3 Si 0.914 3.086 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.468 4.468 8 H 0.082 0.918 9 N -0.365 5.365 10 C 0.061 3.939 11 H 0.084 0.916 12 C -0.021 4.021 13 O -0.365 6.365 14 C -0.009 4.009 15 N -0.347 5.347 16 C 0.304 3.696 17 O -0.428 6.428 18 C 0.096 3.904 19 C -0.100 4.100 20 C -0.125 4.125 21 C -0.146 4.146 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.097 4.097 25 C -0.176 4.176 26 C -0.194 4.194 27 C -0.026 4.026 28 O -0.277 6.277 29 H 0.070 0.930 30 H 0.205 0.795 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.209 0.791 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.251 0.749 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.680 -9.609 11.127 14.798 hybrid contribution 0.361 -1.459 -0.552 1.601 sum -1.319 -11.068 10.575 15.365 Atomic orbital electron populations 1.70779 1.05995 1.28769 1.52723 1.25685 0.97045 1.00765 1.00261 0.83188 0.73527 0.75269 0.76574 1.22236 1.22143 1.22033 1.20055 0.91873 0.85686 1.49225 0.91801 1.42348 1.05029 0.99988 1.89182 1.20514 0.94988 0.86564 0.91878 0.91581 1.23023 0.86453 0.97284 0.95370 1.86557 1.32270 1.91911 1.25775 1.21598 0.99490 0.97011 0.82799 1.45927 1.49501 1.21943 1.17320 1.20289 0.78462 0.84323 0.86486 1.90648 1.57344 1.22641 1.72178 1.20872 0.86801 0.91458 0.91273 1.19653 0.92855 0.94134 1.03326 1.20951 0.91680 0.99783 1.00085 1.21035 0.98141 0.93917 1.01464 1.21202 0.97548 0.95017 0.99504 1.21244 0.92261 1.00514 0.99068 1.21074 0.99692 0.92619 0.96287 1.23209 0.98549 0.97686 0.98130 1.23290 0.97687 0.97357 1.01045 1.23451 1.00890 0.91224 0.87048 1.88484 1.53511 1.50340 1.35360 0.93043 0.79463 0.93247 0.95471 0.79106 0.90713 0.92087 0.74891 0.85963 0.86149 0.86153 0.85488 0.85119 0.89425 0.87809 0.89544 0.90227 0.91778 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.37 13.70 55.49 0.76 -27.61 16 2 C -0.04 -1.10 5.50 -17.43 -0.10 -1.19 16 3 Si 1.08 25.55 29.92 -169.99 -5.09 20.46 16 4 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.34 -9.09 9.93 -15.06 -0.15 -9.24 16 8 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.72 -17.56 4.51 -53.42 -0.24 -17.80 16 10 C 0.17 3.41 2.84 -67.93 -0.19 3.22 16 11 H 0.07 1.29 8.08 -51.92 -0.42 0.87 16 12 C 0.06 1.08 6.86 37.16 0.25 1.33 16 13 O -0.56 -10.30 12.64 -35.23 -0.45 -10.75 16 14 C 0.12 2.17 5.12 -4.04 -0.02 2.15 16 15 N -0.70 -13.02 5.30 -60.29 -0.32 -13.34 16 16 C 0.52 9.46 6.73 -10.99 -0.07 9.39 16 17 O -0.55 -11.04 15.56 5.55 0.09 -10.96 16 18 C 0.14 2.12 0.98 -92.20 -0.09 2.03 16 19 C -0.10 -1.57 4.80 -104.63 -0.50 -2.07 16 20 C -0.11 -1.52 8.75 -39.58 -0.35 -1.87 16 21 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 22 C -0.11 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.11 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.08 -1.33 9.36 -39.58 -0.37 -1.70 16 25 C -0.14 -1.69 4.98 -24.78 -0.12 -1.81 16 26 C -0.16 -1.57 7.16 -24.49 -0.18 -1.75 16 27 C 0.05 0.55 7.78 38.18 0.30 0.85 16 28 O -0.36 -5.33 9.13 -35.23 -0.32 -5.66 16 29 H 0.26 7.86 6.77 -40.82 -0.28 7.59 16 30 H 0.37 9.84 6.63 -40.82 -0.27 9.57 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.36 4.84 9.12 45.56 0.42 5.25 16 34 H 0.07 1.57 7.39 -51.93 -0.38 1.19 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.41 8.11 7.65 -40.82 -0.31 7.80 16 37 H 0.12 1.54 6.85 -52.48 -0.36 1.18 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 41 H 0.13 2.37 7.55 -52.49 -0.40 1.97 16 42 H 0.09 0.93 6.88 -51.93 -0.36 0.57 16 43 H 0.10 1.37 6.76 -51.93 -0.35 1.02 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -33.25 385.66 -8.68 -41.93 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -6.15 Total: 24.83 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.78 Total: -6.92 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.20 Total: -58.75 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.68 Total: -27.37 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.09 Total: 20.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.25 -8.68 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507256445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.430 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds