Wall clock time and date at job start Tue Mar 31 2020 22:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.46786 * 35.00337 * 10 9 7 12 12 C 1.53002 * 109.47505 * 275.00534 * 10 9 7 13 13 O 1.42904 * 109.46665 * 294.99774 * 12 10 9 14 14 C 1.53000 * 109.47284 * 155.00020 * 10 9 7 15 15 N 1.46500 * 109.47051 * 305.00478 * 14 10 9 16 16 C 1.34777 * 119.99975 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00012 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99975 * 180.02562 * 16 15 14 19 19 C 1.50693 * 109.82725 * 84.11194 * 18 16 15 20 20 C 1.38231 * 120.00680 * 90.42884 * 19 18 16 21 21 C 1.38236 * 120.00460 * 179.78977 * 20 19 18 22 22 C 1.38234 * 119.99559 * 0.43709 * 21 20 19 23 23 C 1.38234 * 120.00153 * 359.81261 * 22 21 20 24 24 C 1.38233 * 120.00224 * 359.97438 * 23 22 21 25 25 C 1.54388 * 109.82949 * 204.99667 * 18 16 15 26 26 C 1.55306 * 102.25193 * 98.15143 * 25 18 16 27 27 C 1.54938 * 100.94280 * 34.13483 * 26 25 18 28 28 O 1.43239 * 109.82906 * 323.12501 * 18 16 15 29 29 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47003 * 54.99604 * 12 10 9 32 32 H 1.08990 * 109.47392 * 174.99743 * 12 10 9 33 33 H 0.96701 * 113.99777 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.46938 * 65.00405 * 14 10 9 35 35 H 1.08999 * 109.47081 * 185.00209 * 14 10 9 36 36 H 0.97001 * 120.00380 * 359.97438 * 15 14 10 37 37 H 1.08005 * 119.99765 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00013 * 180.26942 * 21 20 19 39 39 H 1.07999 * 119.99375 * 179.83783 * 22 21 20 40 40 H 1.08004 * 119.99742 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.00119 * 179.97438 * 24 23 22 42 42 H 1.08999 * 110.85059 * 216.34697 * 25 18 16 43 43 H 1.09001 * 110.84643 * 339.96234 * 25 18 16 44 44 H 1.09003 * 111.11910 * 152.05409 * 26 25 18 45 45 H 1.09000 * 111.12757 * 276.17039 * 26 25 18 46 46 H 1.09002 * 110.30975 * 82.46662 * 27 26 25 47 47 H 1.08999 * 110.31048 * 204.63376 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 2.9693 -3.5502 0.5904 12 6 2.4211 -4.0362 -1.4355 13 8 1.2263 -4.2896 -2.1774 14 6 1.1815 -4.7518 0.6124 15 7 0.7358 -4.3346 1.9441 16 6 -0.0526 -5.1465 2.6760 17 8 -0.3935 -6.2224 2.2319 18 6 -0.5115 -4.7170 4.0456 19 6 -1.7380 -3.8498 3.9251 20 6 -2.9955 -4.4234 3.9509 21 6 -4.1206 -3.6274 3.8447 22 6 -3.9881 -2.2587 3.7037 23 6 -2.7305 -1.6856 3.6727 24 6 -1.6055 -2.4811 3.7833 25 6 -0.8310 -5.9595 4.9044 26 6 0.4686 -6.1270 5.7381 27 6 0.8851 -4.6475 5.9338 28 8 0.5348 -3.9933 4.7039 29 1 -0.4849 -0.8401 0.0004 30 1 0.3557 -2.3881 0.0016 31 1 2.9704 -3.2171 -1.8999 32 1 3.0416 -4.9322 -1.4290 33 1 1.3808 -4.5359 -3.0996 34 1 0.3135 -4.9201 -0.0251 35 1 1.7565 -5.6742 0.6941 36 1 1.0087 -3.4742 2.2995 37 1 -3.0989 -5.4932 4.0570 38 1 -5.1031 -4.0752 3.8693 39 1 -4.8671 -1.6371 3.6181 40 1 -2.6271 -0.6162 3.5620 41 1 -0.6230 -2.0334 3.7586 42 1 -1.6868 -5.7731 5.5532 43 1 -1.0031 -6.8325 4.2748 44 1 0.2623 -6.6069 6.6948 45 1 1.2252 -6.6783 5.1799 46 1 0.3365 -4.2069 6.7663 47 1 1.9588 -4.5766 6.1076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507256445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:25 Heat of formation + Delta-G solvation = -113.180272 kcal Electronic energy + Delta-G solvation = -30346.375793 eV Core-core repulsion = 26300.440105 eV Total energy + Delta-G solvation = -4045.935688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.07406 -39.96878 -39.30646 -38.65032 -36.59081 -35.48621 -33.63012 -33.38891 -32.68945 -31.73880 -30.00795 -29.19214 -26.90125 -25.54691 -24.67081 -23.88310 -22.89349 -22.29342 -21.84596 -20.80407 -19.57917 -19.03236 -18.36427 -18.24095 -17.48855 -16.87174 -16.69536 -16.65189 -16.20462 -15.80480 -15.71933 -15.55838 -15.29543 -15.07299 -14.92611 -14.69325 -14.58829 -14.37620 -14.06993 -13.67387 -13.47329 -13.09935 -13.04765 -12.81674 -12.68818 -12.59747 -12.32052 -12.27539 -12.06546 -11.93960 -11.86311 -11.84341 -11.50079 -11.28438 -11.00618 -10.80742 -10.54656 -10.12956 -9.87613 -9.73957 -9.10065 -8.32098 -5.26878 0.25434 0.44120 1.44567 1.59032 1.70073 1.80773 2.13179 2.51937 2.72022 2.81260 3.39956 3.43663 3.49602 3.51088 3.66213 3.71097 3.88808 3.99556 4.02921 4.07439 4.13582 4.23816 4.29647 4.32793 4.42993 4.48625 4.54613 4.63015 4.67315 4.71928 4.76201 4.84168 4.88366 4.93897 4.98087 5.07590 5.08825 5.13002 5.36787 5.47152 5.49986 5.57856 5.63549 5.83720 6.02412 6.45656 6.53208 6.95350 7.05757 7.11291 8.00002 8.15409 9.17995 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.004653 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.684278 B = 6015.699321 C = 7137.526395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.099 4.099 3 Si 1.129 2.871 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.326 4.326 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.166 3.834 11 H 0.073 0.927 12 C 0.067 3.933 13 O -0.584 6.584 14 C 0.127 3.873 15 N -0.700 5.700 16 C 0.515 3.485 17 O -0.571 6.571 18 C 0.141 3.859 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.133 4.133 24 C -0.102 4.102 25 C -0.135 4.135 26 C -0.146 4.146 27 C 0.040 3.960 28 O -0.381 6.381 29 H 0.242 0.758 30 H 0.357 0.643 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.387 0.613 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.408 0.592 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -12.277 11.962 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.291 4.291 3 Si 0.955 3.045 4 H -0.195 1.195 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.457 4.457 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.057 3.943 11 H 0.091 0.909 12 C -0.013 4.013 13 O -0.391 6.391 14 C 0.002 3.998 15 N -0.350 5.350 16 C 0.301 3.699 17 O -0.452 6.452 18 C 0.098 3.902 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.133 4.133 23 C -0.151 4.151 24 C -0.120 4.120 25 C -0.172 4.172 26 C -0.183 4.183 27 C -0.035 4.035 28 O -0.300 6.300 29 H 0.052 0.948 30 H 0.189 0.811 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.244 0.756 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.165 0.835 40 H 0.139 0.861 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.396 -11.047 12.138 16.471 hybrid contribution 0.307 -1.120 -0.887 1.461 sum -1.089 -12.167 11.251 16.607 Atomic orbital electron populations 1.70907 1.07185 1.27764 1.55926 1.27002 0.97053 1.04290 1.00763 0.82592 0.73869 0.71888 0.76161 1.19538 1.22421 1.22081 1.20358 0.92192 0.86602 1.46580 0.91228 1.42435 1.04375 1.01010 1.89492 1.20759 0.94824 0.85047 0.93652 0.90897 1.22823 0.86534 0.98607 0.93383 1.86509 1.32831 1.92070 1.27702 1.21442 0.98459 0.97289 0.82564 1.45989 1.49905 1.21781 1.17298 1.20913 0.77639 0.83789 0.87566 1.90619 1.58015 1.23471 1.73076 1.20840 0.86543 0.92732 0.90036 1.19797 0.93967 0.93603 1.03691 1.21268 0.91288 1.00944 0.99484 1.21467 0.99445 0.93495 0.99518 1.21520 0.97376 0.95941 0.98440 1.21357 0.93214 1.00388 1.00149 1.20974 0.98929 0.93692 0.98398 1.23236 1.00424 0.95604 0.97975 1.23287 0.96191 0.96716 1.02133 1.23739 1.01991 0.91821 0.85965 1.88473 1.53500 1.51185 1.36891 0.94774 0.81132 0.94581 0.91421 0.76525 0.93099 0.90215 0.75572 0.84051 0.82604 0.83526 0.86137 0.87715 0.87530 0.88768 0.86220 0.90896 0.90414 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.68 13.70 21.65 0.30 -60.39 16 2 C -0.10 -5.67 5.50 84.86 0.47 -5.20 16 3 Si 1.13 51.90 29.92 68.60 2.05 53.96 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.33 -17.73 9.93 84.03 0.83 -16.90 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.73 -36.35 4.51 -322.93 -1.46 -37.81 16 10 C 0.17 6.59 2.84 44.99 0.13 6.71 16 11 H 0.07 2.79 8.08 -2.38 -0.02 2.77 16 12 C 0.07 2.33 6.86 71.98 0.49 2.82 16 13 O -0.58 -20.99 12.64 -148.98 -1.88 -22.87 16 14 C 0.13 4.81 5.12 86.38 0.44 5.25 16 15 N -0.70 -26.89 5.30 -463.06 -2.46 -29.34 16 16 C 0.52 19.01 6.73 87.66 0.59 19.60 16 17 O -0.57 -23.05 15.56 -3.05 -0.05 -23.10 16 18 C 0.14 4.31 0.98 -11.82 -0.01 4.30 16 19 C -0.11 -3.52 4.80 -19.87 -0.10 -3.61 16 20 C -0.11 -3.04 8.75 22.27 0.19 -2.85 16 21 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 22 C -0.11 -3.08 10.05 22.27 0.22 -2.86 16 23 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 24 C -0.10 -3.64 9.36 22.27 0.21 -3.43 16 25 C -0.13 -3.08 4.98 31.86 0.16 -2.93 16 26 C -0.15 -2.62 7.16 32.05 0.23 -2.39 16 27 C 0.04 0.83 7.78 72.64 0.56 1.40 16 28 O -0.38 -11.49 9.13 -148.98 -1.36 -12.85 16 29 H 0.24 15.47 6.77 -92.71 -0.63 14.84 16 30 H 0.36 19.74 6.63 -92.71 -0.61 19.13 16 31 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.39 9.75 9.12 -74.06 -0.68 9.07 16 34 H 0.05 2.18 7.39 -2.39 -0.02 2.16 16 35 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.41 16.75 7.65 -92.71 -0.71 16.04 16 37 H 0.14 3.24 6.85 -2.91 -0.02 3.22 16 38 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.10 4.18 7.55 -2.91 -0.02 4.15 16 42 H 0.11 2.01 6.88 -2.39 -0.02 1.99 16 43 H 0.09 2.37 6.76 -2.39 -0.02 2.35 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -74.02 385.66 -0.82 -74.85 By element: Atomic # 1 Polarization: 65.40 SS G_CDS: -0.85 Total: 64.55 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.88 Total: -6.99 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -3.61 Total: -127.54 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -3.29 Total: -58.82 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.96 kcal Total: -74.02 -0.82 -74.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507256445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.335 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds