Wall clock time and date at job start Tue Mar 31 2020 20:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46900 * 109.46924 * 77.88201 * 3 2 1 5 5 C 1.46904 * 111.00484 * 66.04329 * 4 3 2 6 6 C 1.47195 * 109.47665 * 192.27201 * 5 4 3 7 7 C 5.18698 * 113.14071 * 89.88583 * 2 1 3 8 8 C 1.37987 * 111.00072 * 190.00113 * 4 3 2 9 9 N 1.31772 * 126.33505 * 301.63602 * 8 4 3 10 10 N 1.28523 * 110.07731 * 179.82165 * 9 8 4 11 11 C 1.31762 * 109.85522 * 0.44901 * 10 9 8 12 12 C 1.47099 * 126.47982 * 179.69640 * 11 10 9 13 13 C 1.40338 * 119.91415 * 160.72535 * 12 11 10 14 14 C 1.36050 * 120.08559 * 179.75613 * 13 12 11 15 15 C 1.41034 * 119.91534 * 0.49340 * 14 13 12 16 16 C 1.40834 * 120.08658 * 179.73695 * 15 14 13 17 17 H 1.07999 * 119.99954 * 157.51830 * 16 15 14 18 18 C 1.39901 * 120.00068 * 337.52021 * 16 15 14 19 19 N 1.30862 * 119.99873 * 327.39713 * 18 16 15 20 20 Si 1.86803 * 120.00135 * 147.39447 * 18 16 15 21 21 H 1.48496 * 109.46908 * 94.99027 * 20 18 16 22 22 H 1.48501 * 109.47027 * 214.99527 * 20 18 16 23 23 H 1.48502 * 109.46780 * 334.99327 * 20 18 16 24 24 C 1.41053 * 119.82942 * 359.76225 * 15 14 13 25 25 C 1.36046 * 119.91061 * 359.97438 * 24 15 14 26 26 N 1.36390 * 126.33813 * 121.94608 * 8 4 3 27 27 C 1.46496 * 127.14691 * 359.97438 * 26 8 4 28 28 C 1.53008 * 109.46863 * 272.16404 * 27 26 8 29 29 H 4.40886 * 5.52072 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.47044 * 197.87970 * 3 2 1 31 31 H 1.08997 * 109.47282 * 317.88575 * 3 2 1 32 32 H 1.09002 * 109.46939 * 312.27288 * 5 4 3 33 33 H 1.08996 * 109.46659 * 72.26765 * 5 4 3 34 34 H 6.17351 * 110.95210 * 86.74590 * 2 1 3 35 35 H 1.07999 * 119.95462 * 359.97438 * 13 12 11 36 36 H 1.08006 * 120.03717 * 180.25209 * 14 13 12 37 37 H 0.97002 * 120.00068 * 179.97438 * 19 18 16 38 38 H 1.07998 * 120.03923 * 179.97438 * 24 15 14 39 39 H 1.07998 * 119.95072 * 180.02562 * 25 24 15 40 40 H 1.08997 * 109.47370 * 32.16256 * 27 26 8 41 41 H 1.08994 * 109.47294 * 152.16572 * 27 26 8 42 42 H 1.09003 * 109.46938 * 186.52461 * 28 27 26 43 43 H 1.08993 * 109.46894 * 306.52347 * 28 27 26 44 44 H 1.09002 * 109.46982 * 66.52266 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.2899 -1.3541 5 6 2.7857 0.7921 -2.2841 6 6 3.0230 0.3468 -3.6668 7 6 3.2124 -0.0095 -4.7696 8 6 4.4968 -0.5171 -1.3496 9 7 5.4264 0.3183 -0.9323 10 7 6.5891 -0.2131 -1.0654 11 6 6.4734 -1.4182 -1.5854 12 6 7.5722 -2.3449 -1.8980 13 6 7.3083 -3.7136 -2.0612 14 6 8.3211 -4.5731 -2.3552 15 6 9.6392 -4.0886 -2.4858 16 6 10.6912 -4.9760 -2.7846 17 1 11.5998 -4.6042 -3.2348 18 6 10.5593 -6.3390 -2.4983 19 7 9.8588 -6.7252 -1.4626 20 14 11.3830 -7.6077 -3.5944 21 1 12.7015 -7.9768 -3.0198 22 1 10.5254 -8.8168 -3.6829 23 1 11.5767 -7.0377 -4.9520 24 6 9.9012 -2.7131 -2.3157 25 6 8.8823 -1.8590 -2.0271 26 7 5.1291 -1.6456 -1.7817 27 6 4.5077 -2.8498 -2.3384 28 6 4.1446 -3.8081 -1.2022 29 1 -1.0500 0.0002 0.0000 30 1 3.0089 0.9788 0.3155 31 1 3.0097 -0.7615 0.6891 32 1 1.7340 1.0509 -2.1612 33 1 3.4019 1.6661 -2.0730 34 1 3.3815 -0.3273 -5.7560 35 1 6.2994 -4.0845 -1.9567 36 1 8.1166 -5.6256 -2.4847 37 1 9.7670 -7.6703 -1.2643 38 1 10.9093 -2.3385 -2.4145 39 1 9.0821 -0.8057 -1.8971 40 1 3.6051 -2.5741 -2.8836 41 1 5.2067 -3.3390 -3.0167 42 1 3.7897 -4.7499 -1.6207 43 1 5.0253 -3.9927 -0.5872 44 1 3.3600 -3.3642 -0.5894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520815041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:25 Heat of formation + Delta-G solvation = 224.186674 kcal Electronic energy + Delta-G solvation = -27615.888264 eV Core-core repulsion = 23924.183576 eV Total energy + Delta-G solvation = -3691.704689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.149 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -42.27993 -38.27306 -37.59288 -35.38122 -34.07402 -33.70287 -32.67288 -30.91480 -30.33721 -29.62543 -28.55854 -28.03959 -25.86741 -24.93905 -23.72475 -22.12191 -21.20446 -20.23936 -19.90794 -18.59477 -18.16316 -17.60382 -17.03950 -16.30561 -15.72661 -15.60514 -15.38365 -14.82630 -14.72920 -14.62203 -13.73878 -13.63364 -13.43020 -13.25908 -13.07493 -12.84363 -12.76177 -12.25405 -12.11349 -11.94296 -11.49829 -11.32912 -11.30299 -11.06220 -10.94952 -10.89148 -10.77675 -10.68049 -10.54814 -10.21220 -10.18027 -9.96445 -9.67746 -9.53377 -9.32174 -8.84713 -8.77231 -7.77410 -7.42566 -7.15180 -4.56514 1.82891 2.09022 2.55582 2.61992 2.79458 2.80535 2.89613 2.91478 2.95190 2.97925 3.03096 3.59240 3.68545 3.91709 4.14911 4.32895 4.35813 4.87012 4.99440 5.11520 5.17217 5.20077 5.32276 5.36524 5.39158 5.51109 5.65817 5.68914 5.73649 5.79474 5.83811 5.95741 6.01856 6.25022 6.29987 6.45299 6.53776 6.70790 6.76298 6.93001 7.04156 7.06719 7.36670 7.38371 7.50891 7.55203 7.73421 7.78762 7.86641 8.00337 8.30801 8.55881 8.70121 9.29230 9.71767 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.002760 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.434627 B =10143.694067 C =10412.159150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.180 4.180 3 C 0.177 3.823 4 N -0.453 5.453 5 C 0.173 3.827 6 C -0.184 4.184 7 C -0.188 4.188 8 C 0.300 3.700 9 N -0.308 5.308 10 N -0.316 5.316 11 C 0.295 3.705 12 C -0.198 4.198 13 C -0.076 4.076 14 C -0.185 4.185 15 C 0.127 3.873 16 C -0.443 4.443 17 H 0.089 0.911 18 C 0.085 3.915 19 N -0.750 5.750 20 Si 0.901 3.099 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.236 4.236 25 C -0.022 4.022 26 N -0.463 5.463 27 C 0.108 3.892 28 C -0.170 4.170 29 H 0.219 0.781 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.218 0.782 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.289 0.711 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.652 4.177 -1.648 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C 0.052 3.948 4 N -0.178 5.178 5 C 0.047 3.953 6 C -0.184 4.184 7 C -0.206 4.206 8 C -0.055 4.055 9 N -0.153 5.153 10 N -0.158 5.158 11 C 0.035 3.965 12 C -0.203 4.203 13 C -0.096 4.096 14 C -0.205 4.205 15 C 0.124 3.876 16 C -0.470 4.470 17 H 0.107 0.893 18 C -0.140 4.140 19 N -0.371 5.371 20 Si 0.724 3.276 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.178 1.178 24 C -0.255 4.255 25 C -0.043 4.043 26 N -0.155 5.155 27 C -0.015 4.015 28 C -0.228 4.228 29 H 0.236 0.764 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.376 4.826 -1.039 15.200 hybrid contribution -0.210 -1.337 -0.787 1.566 sum -14.586 3.489 -1.826 15.108 Atomic orbital electron populations 1.24874 0.95770 1.01330 0.98804 1.22682 0.93855 1.00208 1.01340 1.18953 0.84725 1.02934 0.88221 1.58123 1.07069 1.44077 1.08516 1.19100 1.02045 0.91235 0.82902 1.22670 1.00470 1.00721 0.94547 1.24890 1.00518 0.98568 0.96605 1.21572 0.90087 0.87207 1.06671 1.74491 0.95812 1.24951 1.20040 1.74556 1.14576 1.06110 1.20565 1.23211 0.81751 0.94347 0.97149 1.16751 0.89458 0.90450 1.23626 1.20725 0.98123 0.92056 0.98671 1.20632 0.92265 0.98405 1.09183 1.17700 0.92509 0.91620 0.85789 1.19684 1.02118 0.91520 1.33639 0.89347 1.26084 0.93956 1.00297 0.93660 1.69931 1.28795 1.19201 1.19137 0.86398 0.79864 0.79356 0.81975 1.19112 1.19606 1.17792 1.20607 0.97311 0.94087 1.13515 1.20290 0.91072 0.97994 0.94898 1.46239 1.06961 1.14197 1.48132 1.21904 0.99146 0.83602 0.96890 1.22196 1.02673 0.99043 0.98845 0.76434 0.90131 0.87926 0.87642 0.90454 0.76521 0.88218 0.87524 0.89994 0.88249 0.88042 0.89190 0.88041 0.90606 0.91169 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 19.25 29.55 0.57 -1.09 16 2 C -0.18 -1.92 12.29 -37.12 -0.46 -2.37 16 3 C 0.18 2.11 5.33 -6.61 -0.04 2.08 16 4 N -0.45 -6.28 4.46 -181.24 -0.81 -7.09 16 5 C 0.17 2.19 5.29 -6.61 -0.03 2.15 16 6 C -0.18 -2.53 12.98 -37.12 -0.48 -3.01 16 7 C -0.19 -2.35 19.25 29.56 0.57 -1.78 16 8 C 0.30 5.19 5.73 -319.12 -1.83 3.36 16 9 N -0.31 -6.16 12.07 30.28 0.37 -5.80 16 10 N -0.32 -7.04 12.02 32.53 0.39 -6.65 16 11 C 0.30 6.27 7.67 -153.52 -1.18 5.10 16 12 C -0.20 -4.41 5.88 -104.73 -0.62 -5.03 16 13 C -0.08 -1.64 8.54 -39.58 -0.34 -1.98 16 14 C -0.19 -4.37 8.72 -39.31 -0.34 -4.71 16 15 C 0.13 3.13 5.57 -106.79 -0.59 2.54 16 16 C -0.44 -10.66 8.92 -37.98 -0.34 -11.00 16 17 H 0.09 2.04 8.02 -52.49 -0.42 1.62 16 18 C 0.08 1.91 4.75 -17.34 -0.08 1.83 16 19 N -0.75 -17.42 11.81 55.55 0.66 -16.77 16 20 Si 0.90 16.55 29.66 -169.99 -5.04 11.51 16 21 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 22 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 23 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16 24 C -0.24 -5.52 9.73 -39.30 -0.38 -5.91 16 25 C -0.02 -0.51 9.63 -39.58 -0.38 -0.89 16 26 N -0.46 -8.31 2.83 -114.82 -0.33 -8.64 16 27 C 0.11 1.59 5.99 -4.04 -0.02 1.57 16 28 C -0.17 -2.24 9.40 37.16 0.35 -1.89 16 29 H 0.22 1.12 7.80 -54.09 -0.42 0.70 16 30 H 0.08 0.93 8.12 -51.93 -0.42 0.50 16 31 H 0.10 1.25 8.05 -51.93 -0.42 0.84 16 32 H 0.11 1.10 6.96 -51.93 -0.36 0.74 16 33 H 0.08 1.02 7.99 -51.93 -0.42 0.60 16 34 H 0.22 1.98 7.80 -54.09 -0.42 1.56 16 35 H 0.10 1.88 3.28 -52.49 -0.17 1.70 16 36 H 0.11 2.52 6.55 -52.48 -0.34 2.18 16 37 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.10 2.22 7.96 -52.49 -0.42 1.80 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.10 1.55 5.92 -51.93 -0.31 1.24 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.07 7.07 -51.93 -0.37 0.71 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -28.78 385.41 -9.90 -38.68 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.31 Total: 9.98 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -5.63 Total: -21.03 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.28 Total: -44.93 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.04 Total: 11.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.78 -9.90 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520815041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.864 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 234.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 224.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds