Wall clock time and date at job start Tue Mar 31 2020 20:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46900 * 109.46924 * 77.88201 * 3 2 1 5 5 C 1.46904 * 111.00484 * 66.04329 * 4 3 2 6 6 C 1.47195 * 109.47665 * 192.27201 * 5 4 3 7 7 C 5.18698 * 113.14071 * 89.88583 * 2 1 3 8 8 C 1.37987 * 111.00072 * 190.00113 * 4 3 2 9 9 N 1.31772 * 126.33505 * 301.63602 * 8 4 3 10 10 N 1.28523 * 110.07731 * 179.82165 * 9 8 4 11 11 C 1.31762 * 109.85522 * 0.44901 * 10 9 8 12 12 C 1.47099 * 126.47982 * 179.69640 * 11 10 9 13 13 C 1.40338 * 119.91415 * 160.72535 * 12 11 10 14 14 C 1.36050 * 120.08559 * 179.75613 * 13 12 11 15 15 C 1.41034 * 119.91534 * 0.49340 * 14 13 12 16 16 C 1.40834 * 120.08658 * 179.73695 * 15 14 13 17 17 H 1.07999 * 119.99954 * 157.51830 * 16 15 14 18 18 C 1.39901 * 120.00068 * 337.52021 * 16 15 14 19 19 N 1.30862 * 119.99873 * 327.39713 * 18 16 15 20 20 Si 1.86803 * 120.00135 * 147.39447 * 18 16 15 21 21 H 1.48496 * 109.46908 * 94.99027 * 20 18 16 22 22 H 1.48501 * 109.47027 * 214.99527 * 20 18 16 23 23 H 1.48502 * 109.46780 * 334.99327 * 20 18 16 24 24 C 1.41053 * 119.82942 * 359.76225 * 15 14 13 25 25 C 1.36046 * 119.91061 * 359.97438 * 24 15 14 26 26 N 1.36390 * 126.33813 * 121.94608 * 8 4 3 27 27 C 1.46496 * 127.14691 * 359.97438 * 26 8 4 28 28 C 1.53008 * 109.46863 * 272.16404 * 27 26 8 29 29 H 4.40886 * 5.52072 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.47044 * 197.87970 * 3 2 1 31 31 H 1.08997 * 109.47282 * 317.88575 * 3 2 1 32 32 H 1.09002 * 109.46939 * 312.27288 * 5 4 3 33 33 H 1.08996 * 109.46659 * 72.26765 * 5 4 3 34 34 H 6.17351 * 110.95210 * 86.74590 * 2 1 3 35 35 H 1.07999 * 119.95462 * 359.97438 * 13 12 11 36 36 H 1.08006 * 120.03717 * 180.25209 * 14 13 12 37 37 H 0.97002 * 120.00068 * 179.97438 * 19 18 16 38 38 H 1.07998 * 120.03923 * 179.97438 * 24 15 14 39 39 H 1.07998 * 119.95072 * 180.02562 * 25 24 15 40 40 H 1.08997 * 109.47370 * 32.16256 * 27 26 8 41 41 H 1.08994 * 109.47294 * 152.16572 * 27 26 8 42 42 H 1.09003 * 109.46938 * 186.52461 * 28 27 26 43 43 H 1.08993 * 109.46894 * 306.52347 * 28 27 26 44 44 H 1.09002 * 109.46982 * 66.52266 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.2899 -1.3541 5 6 2.7857 0.7921 -2.2841 6 6 3.0230 0.3468 -3.6668 7 6 3.2124 -0.0095 -4.7696 8 6 4.4968 -0.5171 -1.3496 9 7 5.4264 0.3183 -0.9323 10 7 6.5891 -0.2131 -1.0654 11 6 6.4734 -1.4182 -1.5854 12 6 7.5722 -2.3449 -1.8980 13 6 7.3083 -3.7136 -2.0612 14 6 8.3211 -4.5731 -2.3552 15 6 9.6392 -4.0886 -2.4858 16 6 10.6912 -4.9760 -2.7846 17 1 11.5998 -4.6042 -3.2348 18 6 10.5593 -6.3390 -2.4983 19 7 9.8588 -6.7252 -1.4626 20 14 11.3830 -7.6077 -3.5944 21 1 12.7015 -7.9768 -3.0198 22 1 10.5254 -8.8168 -3.6829 23 1 11.5767 -7.0377 -4.9520 24 6 9.9012 -2.7131 -2.3157 25 6 8.8823 -1.8590 -2.0271 26 7 5.1291 -1.6456 -1.7817 27 6 4.5077 -2.8498 -2.3384 28 6 4.1446 -3.8081 -1.2022 29 1 -1.0500 0.0002 0.0000 30 1 3.0089 0.9788 0.3155 31 1 3.0097 -0.7615 0.6891 32 1 1.7340 1.0509 -2.1612 33 1 3.4019 1.6661 -2.0730 34 1 3.3815 -0.3273 -5.7560 35 1 6.2994 -4.0845 -1.9567 36 1 8.1166 -5.6256 -2.4847 37 1 9.7670 -7.6703 -1.2643 38 1 10.9093 -2.3385 -2.4145 39 1 9.0821 -0.8057 -1.8971 40 1 3.6051 -2.5741 -2.8836 41 1 5.2067 -3.3390 -3.0167 42 1 3.7897 -4.7499 -1.6207 43 1 5.0253 -3.9927 -0.5872 44 1 3.3600 -3.3642 -0.5894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520815041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:24 Heat of formation + Delta-G solvation = 212.504165 kcal Electronic energy + Delta-G solvation = -27616.394856 eV Core-core repulsion = 23924.183576 eV Total energy + Delta-G solvation = -3692.211280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.149 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.78209 -39.62351 -39.11272 -36.78423 -35.76609 -34.58919 -33.68088 -32.51510 -31.77236 -31.27789 -30.11971 -28.98307 -27.40339 -26.26981 -24.99056 -23.78301 -22.85201 -21.73129 -21.42937 -19.55740 -19.36457 -19.07203 -18.27362 -17.53033 -17.28574 -17.01907 -16.78507 -16.20244 -16.02769 -15.82256 -15.21698 -15.00538 -14.61819 -14.45706 -14.30582 -14.08628 -14.02882 -13.77340 -13.77088 -13.29909 -13.23814 -12.94759 -12.71101 -12.43399 -12.40685 -12.24789 -11.97255 -11.75216 -11.65210 -11.46963 -11.42120 -11.22160 -11.11675 -11.07802 -10.98724 -10.43229 -10.01867 -9.57105 -9.15868 -8.85298 -6.37309 0.24493 0.97510 1.05605 1.16540 1.38495 1.44693 1.56551 1.72039 1.79597 1.88801 1.91188 1.99561 2.16240 2.61322 2.87686 3.28944 3.47150 3.58781 3.64666 3.68129 3.95926 4.00771 4.13136 4.21921 4.25546 4.32865 4.34122 4.41109 4.51074 4.56800 4.62145 4.77091 4.91521 4.94126 5.03763 5.06008 5.11035 5.14373 5.22083 5.28544 5.41354 5.48880 5.60697 5.89169 5.98083 6.06548 6.21980 6.23589 6.51523 6.56659 6.65830 6.76524 6.90183 7.73774 8.06752 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.002760 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.434627 B =10143.694067 C =10412.159150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.225 4.225 3 C 0.181 3.819 4 N -0.450 5.450 5 C 0.175 3.825 6 C -0.223 4.223 7 C -0.177 4.177 8 C 0.328 3.672 9 N -0.336 5.336 10 N -0.343 5.343 11 C 0.276 3.724 12 C -0.201 4.201 13 C -0.069 4.069 14 C -0.202 4.202 15 C 0.102 3.898 16 C -0.475 4.475 17 H 0.087 0.913 18 C 0.051 3.949 19 N -0.780 5.780 20 Si 0.976 3.024 21 H -0.260 1.260 22 H -0.260 1.260 23 H -0.257 1.257 24 C -0.251 4.251 25 C -0.031 4.031 26 N -0.459 5.459 27 C 0.102 3.898 28 C -0.162 4.162 29 H 0.254 0.746 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.245 0.755 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.300 0.700 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.046 0.954 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.369 3.208 -2.460 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.226 4.226 3 C 0.056 3.944 4 N -0.175 5.175 5 C 0.049 3.951 6 C -0.223 4.223 7 C -0.195 4.195 8 C -0.028 4.028 9 N -0.181 5.181 10 N -0.184 5.184 11 C 0.013 3.987 12 C -0.206 4.206 13 C -0.089 4.089 14 C -0.221 4.221 15 C 0.098 3.902 16 C -0.501 4.501 17 H 0.105 0.895 18 C -0.171 4.171 19 N -0.402 5.402 20 Si 0.795 3.205 21 H -0.184 1.184 22 H -0.184 1.184 23 H -0.180 1.180 24 C -0.270 4.270 25 C -0.051 4.051 26 N -0.150 5.150 27 C -0.019 4.019 28 C -0.220 4.220 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.262 0.738 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.065 0.935 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.106 3.866 -1.839 17.634 hybrid contribution 0.396 -0.907 -0.498 1.108 sum -16.711 2.959 -2.337 17.131 Atomic orbital electron populations 1.25720 0.96425 0.98746 0.96098 1.22510 0.93741 1.02573 1.03772 1.18830 0.86183 1.02613 0.86790 1.58395 1.04345 1.44822 1.09937 1.19159 1.03279 0.90273 0.82351 1.23105 1.01765 1.02022 0.95428 1.25684 0.99249 0.97345 0.97233 1.21950 0.91230 0.86183 1.03460 1.74443 0.95751 1.25903 1.21959 1.74459 1.16096 1.06792 1.21080 1.22971 0.82866 0.94284 0.98548 1.16909 0.89725 0.91047 1.22887 1.20939 0.99044 0.91542 0.97329 1.20652 0.92478 0.98433 1.10554 1.18016 0.93394 0.92213 0.86534 1.19919 1.02326 0.92893 1.34939 0.89455 1.26862 0.94392 1.01503 0.94376 1.69928 1.29668 1.20387 1.20185 0.85291 0.79005 0.76696 0.79502 1.18415 1.18442 1.18021 1.20741 0.97835 0.94181 1.14287 1.20399 0.91524 0.98085 0.95084 1.46418 1.06002 1.15179 1.47449 1.22164 0.99428 0.82799 0.97516 1.22155 1.01809 0.99988 0.98042 0.72940 0.90236 0.88766 0.85160 0.91382 0.73835 0.85546 0.87997 0.88874 0.87756 0.87815 0.87370 0.88454 0.87684 0.93464 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 19.25 74.32 1.43 -0.68 16 2 C -0.23 -4.29 12.29 31.13 0.38 -3.91 16 3 C 0.18 4.15 5.33 84.50 0.45 4.60 16 4 N -0.45 -11.92 4.46 -727.33 -3.24 -15.16 16 5 C 0.17 4.19 5.29 84.50 0.45 4.64 16 6 C -0.22 -5.77 12.98 31.12 0.40 -5.37 16 7 C -0.18 -4.06 19.25 74.32 1.43 -2.63 16 8 C 0.33 11.22 5.73 260.20 1.49 12.71 16 9 N -0.34 -13.63 12.07 -58.12 -0.70 -14.33 16 10 N -0.34 -15.60 12.02 -51.00 -0.61 -16.22 16 11 C 0.28 11.87 7.67 135.79 1.04 12.91 16 12 C -0.20 -9.17 5.88 -19.93 -0.12 -9.29 16 13 C -0.07 -3.02 8.54 22.27 0.19 -2.83 16 14 C -0.20 -9.74 8.72 22.45 0.20 -9.54 16 15 C 0.10 5.19 5.57 -21.27 -0.12 5.07 16 16 C -0.47 -23.46 8.92 23.31 0.21 -23.25 16 17 H 0.09 4.17 8.02 -2.91 -0.02 4.14 16 18 C 0.05 2.32 4.75 85.24 0.40 2.73 16 19 N -0.78 -36.53 11.81 21.82 0.26 -36.28 16 20 Si 0.98 33.63 29.66 68.60 2.03 35.67 16 21 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 22 H -0.26 -8.44 7.11 99.48 0.71 -7.74 16 23 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 24 C -0.25 -12.27 9.73 22.45 0.22 -12.05 16 25 C -0.03 -1.46 9.63 22.27 0.21 -1.24 16 26 N -0.46 -16.25 2.83 -517.18 -1.47 -17.72 16 27 C 0.10 2.86 5.99 86.38 0.52 3.38 16 28 C -0.16 -3.97 9.40 71.98 0.68 -3.30 16 29 H 0.25 1.32 7.80 -4.42 -0.03 1.29 16 30 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 31 H 0.09 2.27 8.05 -2.39 -0.02 2.25 16 32 H 0.13 2.44 6.96 -2.39 -0.02 2.42 16 33 H 0.07 1.77 7.99 -2.39 -0.02 1.75 16 34 H 0.25 3.77 7.80 -4.42 -0.03 3.73 16 35 H 0.13 4.71 3.28 -2.91 -0.01 4.70 16 36 H 0.10 4.93 6.55 -2.91 -0.02 4.91 16 37 H 0.30 12.36 8.30 -92.71 -0.77 11.59 16 38 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 39 H 0.10 4.75 7.96 -2.91 -0.02 4.72 16 40 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.10 2.83 5.92 -2.39 -0.01 2.82 16 42 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.39 7.07 -2.39 -0.02 1.38 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -64.19 385.41 6.76 -57.43 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 1.02 Total: 34.64 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 9.47 Total: -28.03 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -5.76 Total: -99.70 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 2.03 Total: 35.67 kcal Total: -64.19 6.76 -57.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520815041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 269.930 kcal (2) G-P(sol) polarization free energy of solvation -64.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 212.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds