Wall clock time and date at job start Tue Mar 31 2020 22:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00578 * 2 1 4 4 H 1.48498 * 109.47477 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47293 * 300.00445 * 3 2 1 6 6 H 1.48500 * 109.47047 * 59.99826 * 3 2 1 7 7 C 1.38821 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99716 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99731 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85099 * 23.79694 * 10 9 7 12 12 C 1.53782 * 113.61617 * 155.00071 * 10 9 7 13 13 C 1.53781 * 87.08224 * 89.19919 * 12 10 9 14 14 H 1.09006 * 113.61315 * 270.80477 * 13 12 10 15 15 C 1.52997 * 113.61559 * 139.98357 * 13 12 10 16 16 N 1.46505 * 109.47212 * 174.99892 * 15 13 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 13 18 18 O 1.21280 * 120.00597 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99622 * 179.97438 * 17 16 15 20 20 C 1.52999 * 110.43431 * 59.30503 * 19 17 16 21 21 F 1.39900 * 109.47259 * 60.69968 * 20 19 17 22 22 F 1.39901 * 109.47293 * 180.70247 * 20 19 17 23 23 F 1.39903 * 109.46865 * 300.69970 * 20 19 17 24 24 C 1.54883 * 110.48983 * 296.76198 * 19 17 16 25 25 C 1.55242 * 102.58871 * 279.18916 * 24 19 17 26 26 C 1.54270 * 104.22895 * 322.07941 * 25 24 19 27 27 C 1.53874 * 106.59589 * 23.61286 * 26 25 24 28 28 C 1.53782 * 113.68958 * 252.53663 * 10 9 7 29 29 H 0.96998 * 119.99448 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00060 * 359.97438 * 9 7 2 31 31 H 1.09003 * 113.61213 * 334.65324 * 12 10 9 32 32 H 1.08992 * 113.69083 * 203.75906 * 12 10 9 33 33 H 1.09002 * 109.47153 * 54.99884 * 15 13 12 34 34 H 1.09001 * 109.46832 * 295.00075 * 15 13 12 35 35 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 36 36 H 1.09002 * 110.75531 * 37.57771 * 24 19 17 37 37 H 1.08997 * 110.76332 * 160.94761 * 24 19 17 38 38 H 1.08997 * 110.46683 * 203.39262 * 25 24 19 39 39 H 1.09001 * 110.47152 * 80.77260 * 25 24 19 40 40 H 1.08996 * 110.03326 * 264.32915 * 26 25 24 41 41 H 1.09001 * 110.02977 * 142.89665 * 26 25 24 42 42 H 1.08998 * 110.03151 * 240.70783 * 27 26 25 43 43 H 1.09007 * 110.03329 * 119.28193 * 27 26 25 44 44 H 1.08998 * 113.61542 * 156.32473 * 28 10 9 45 45 H 1.08998 * 113.61766 * 25.42183 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 3.0658 -3.5641 0.4029 12 6 1.2604 -4.8291 0.5939 13 6 0.7213 -5.0802 -0.8243 14 1 -0.1905 -4.5266 -1.0491 15 6 0.6213 -6.5628 -1.1884 16 7 -0.0101 -6.7013 -2.5032 17 6 -0.2031 -7.9256 -3.0323 18 8 0.1455 -8.9128 -2.4201 19 6 -0.8531 -8.0681 -4.3845 20 6 -0.0373 -7.3326 -5.4495 21 9 1.2470 -7.8835 -5.5162 22 9 -0.6663 -7.4642 -6.6922 23 9 0.0534 -5.9774 -5.1140 24 6 -2.3053 -7.5309 -4.3472 25 6 -3.0892 -8.7175 -3.7247 26 6 -2.4286 -9.9706 -4.3360 27 6 -1.0069 -9.5576 -4.7554 28 6 1.9998 -4.4027 -1.3453 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 0.4936 -4.5195 1.3040 32 1 1.8863 -5.6371 0.9724 33 1 0.0209 -7.0809 -0.4406 34 1 1.6203 -6.9979 -1.2174 35 1 -0.2886 -5.9117 -2.9930 36 1 -2.3736 -6.6456 -3.7150 37 1 -2.6640 -7.3165 -5.3539 38 1 -4.1418 -8.6669 -4.0032 39 1 -2.9802 -8.7194 -2.6402 40 1 -2.9932 -10.3030 -5.2070 41 1 -2.3823 -10.7677 -3.5940 42 1 -0.8815 -9.6897 -5.8300 43 1 -0.2706 -10.1544 -4.2170 44 1 2.8290 -5.0935 -1.4975 45 1 1.8299 -3.7488 -2.2007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565880474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:52 Heat of formation + Delta-G solvation = -171.698414 kcal Electronic energy + Delta-G solvation = -30262.507570 eV Core-core repulsion = 25672.177605 eV Total energy + Delta-G solvation = -4590.329965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 18.43 seconds Orbital eigenvalues (eV) -50.47230 -47.96466 -47.89993 -40.66106 -38.78816 -37.40737 -34.85218 -33.27058 -31.24288 -30.12242 -29.26430 -27.37494 -25.13481 -25.08511 -23.88490 -22.79319 -21.68054 -21.02001 -20.22354 -19.00704 -18.57046 -18.46547 -18.09065 -17.33825 -16.73911 -16.25341 -15.67569 -15.15500 -14.98435 -14.78986 -14.72218 -14.56534 -14.33984 -14.13337 -14.09792 -14.05168 -13.88666 -13.72865 -13.47759 -13.22500 -12.92214 -12.33416 -12.11489 -11.94783 -11.87176 -11.72235 -11.58754 -11.54198 -11.40759 -11.06997 -10.88193 -10.85111 -10.52773 -10.28430 -10.14193 -9.88306 -9.71826 -9.51794 -9.14282 -8.91177 -7.02359 -5.83008 -3.11940 1.93484 2.57971 2.77965 3.35474 3.40277 3.45445 3.46458 3.48422 3.72241 4.10437 4.18037 4.38545 4.54024 4.66762 4.82341 4.87999 4.95909 4.99889 5.02104 5.16869 5.19437 5.32042 5.43002 5.48268 5.52271 5.57373 5.65287 5.70883 5.72716 5.79994 5.90839 5.93898 6.05264 6.18302 6.26854 6.34457 6.55136 6.72855 6.85864 7.01551 7.27318 7.67878 7.91061 8.36224 9.47095 10.04261 10.38479 11.39513 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017512 B = 0.002738 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.487843 B =10224.841321 C =10662.356816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.147 4.147 13 C -0.121 4.121 14 H 0.094 0.906 15 C 0.130 3.870 16 N -0.715 5.715 17 C 0.528 3.472 18 O -0.520 6.520 19 C -0.137 4.137 20 C 0.466 3.534 21 F -0.175 7.175 22 F -0.174 7.174 23 F -0.174 7.174 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.107 4.107 28 C -0.169 4.169 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.406 0.594 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 -20.462 -10.839 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.112 0.888 15 C 0.007 3.993 16 N -0.368 5.368 17 C 0.311 3.689 18 O -0.395 6.395 19 C -0.142 4.142 20 C 0.411 3.589 21 F -0.156 7.156 22 F -0.155 7.155 23 F -0.155 7.155 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.145 4.145 28 C -0.210 4.210 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.138 -20.963 -10.379 23.949 hybrid contribution 0.139 1.516 -0.593 1.634 sum -4.999 -19.447 -10.972 22.881 Atomic orbital electron populations 1.69669 1.05134 1.25673 1.57560 1.24764 0.95550 0.97798 1.02777 0.86101 0.78839 0.83958 0.77195 1.20483 1.21833 1.21823 1.19337 0.91159 0.83943 1.42826 0.90930 1.42175 1.05683 0.99452 1.87116 1.21047 0.95131 0.85577 0.92704 0.91918 1.23443 1.00515 0.99734 0.94962 1.22726 0.99742 0.92690 0.98771 0.88827 1.21579 0.97730 0.97433 0.82514 1.46207 1.61291 1.07842 1.21428 1.19475 0.79101 0.84083 0.86264 1.90701 1.49958 1.37388 1.61488 1.23115 0.98100 1.00570 0.92395 1.20080 0.78812 0.77743 0.82236 1.93230 1.40600 1.85239 1.96526 1.93182 1.82014 1.95617 1.44725 1.93186 1.96252 1.34207 1.91887 1.22766 0.89021 0.99549 1.03779 1.22410 0.99590 0.93104 1.00746 1.22073 0.94162 0.98237 1.01048 1.22186 0.99918 0.90033 1.02330 1.23904 0.95582 0.99682 1.01861 0.93492 0.78122 0.91265 0.90415 0.91436 0.91244 0.75761 0.89462 0.88828 0.90265 0.90879 0.91027 0.90766 0.90144 0.88372 0.91352 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.19 5.31 -52.63 -0.28 -17.47 16 10 C 0.17 3.23 4.56 -67.12 -0.31 2.92 16 11 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 12 C -0.15 -2.29 7.39 -25.92 -0.19 -2.48 16 13 C -0.12 -1.76 3.63 -89.81 -0.33 -2.09 16 14 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 15 C 0.13 1.69 5.51 -4.04 -0.02 1.67 16 16 N -0.72 -8.75 5.06 -60.29 -0.31 -9.05 16 17 C 0.53 6.59 6.09 -10.99 -0.07 6.53 16 18 O -0.52 -7.87 15.43 5.56 0.09 -7.78 16 19 C -0.14 -1.36 0.32 -154.00 -0.05 -1.41 16 20 C 0.47 5.02 2.23 37.16 0.08 5.10 16 21 F -0.17 -2.13 16.88 2.25 0.04 -2.10 16 22 F -0.17 -1.74 15.78 2.25 0.04 -1.70 16 23 F -0.17 -2.01 14.96 2.25 0.03 -1.98 16 24 C -0.11 -0.90 5.64 -24.55 -0.14 -1.03 16 25 C -0.12 -0.87 6.62 -24.88 -0.16 -1.04 16 26 C -0.12 -0.84 6.80 -25.61 -0.17 -1.02 16 27 C -0.11 -0.94 5.49 -25.61 -0.14 -1.08 16 28 C -0.17 -2.81 7.43 -25.92 -0.19 -3.00 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.38 9.88 7.90 -40.82 -0.32 9.56 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 35 H 0.41 4.68 6.41 -40.82 -0.26 4.42 16 36 H 0.09 0.68 7.64 -51.93 -0.40 0.29 16 37 H 0.09 0.64 7.42 -51.93 -0.39 0.25 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.62 7.29 -51.93 -0.38 0.24 16 43 H 0.10 1.01 6.86 -51.93 -0.36 0.65 16 44 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -30.55 371.28 -7.72 -38.27 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.69 Total: 10.15 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.94 Total: -4.14 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.14 Total: -53.39 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.11 Total: -5.78 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.55 -7.72 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565880474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.432 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.43 seconds