Wall clock time and date at job start Tue Mar 31 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00578 * 2 1 4 4 H 1.48498 * 109.47477 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47293 * 300.00445 * 3 2 1 6 6 H 1.48500 * 109.47047 * 59.99826 * 3 2 1 7 7 C 1.38821 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99716 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99731 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85099 * 23.79694 * 10 9 7 12 12 C 1.53782 * 113.61617 * 155.00071 * 10 9 7 13 13 C 1.53781 * 87.08224 * 89.19919 * 12 10 9 14 14 H 1.09006 * 113.61315 * 270.80477 * 13 12 10 15 15 C 1.52997 * 113.61559 * 139.98357 * 13 12 10 16 16 N 1.46505 * 109.47212 * 174.99892 * 15 13 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 13 18 18 O 1.21280 * 120.00597 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99622 * 179.97438 * 17 16 15 20 20 C 1.52999 * 110.43431 * 59.30503 * 19 17 16 21 21 F 1.39900 * 109.47259 * 60.69968 * 20 19 17 22 22 F 1.39901 * 109.47293 * 180.70247 * 20 19 17 23 23 F 1.39903 * 109.46865 * 300.69970 * 20 19 17 24 24 C 1.54883 * 110.48983 * 296.76198 * 19 17 16 25 25 C 1.55242 * 102.58871 * 279.18916 * 24 19 17 26 26 C 1.54270 * 104.22895 * 322.07941 * 25 24 19 27 27 C 1.53874 * 106.59589 * 23.61286 * 26 25 24 28 28 C 1.53782 * 113.68958 * 252.53663 * 10 9 7 29 29 H 0.96998 * 119.99448 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00060 * 359.97438 * 9 7 2 31 31 H 1.09003 * 113.61213 * 334.65324 * 12 10 9 32 32 H 1.08992 * 113.69083 * 203.75906 * 12 10 9 33 33 H 1.09002 * 109.47153 * 54.99884 * 15 13 12 34 34 H 1.09001 * 109.46832 * 295.00075 * 15 13 12 35 35 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 36 36 H 1.09002 * 110.75531 * 37.57771 * 24 19 17 37 37 H 1.08997 * 110.76332 * 160.94761 * 24 19 17 38 38 H 1.08997 * 110.46683 * 203.39262 * 25 24 19 39 39 H 1.09001 * 110.47152 * 80.77260 * 25 24 19 40 40 H 1.08996 * 110.03326 * 264.32915 * 26 25 24 41 41 H 1.09001 * 110.02977 * 142.89665 * 26 25 24 42 42 H 1.08998 * 110.03151 * 240.70783 * 27 26 25 43 43 H 1.09007 * 110.03329 * 119.28193 * 27 26 25 44 44 H 1.08998 * 113.61542 * 156.32473 * 28 10 9 45 45 H 1.08998 * 113.61766 * 25.42183 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 3.0658 -3.5641 0.4029 12 6 1.2604 -4.8291 0.5939 13 6 0.7213 -5.0802 -0.8243 14 1 -0.1905 -4.5266 -1.0491 15 6 0.6213 -6.5628 -1.1884 16 7 -0.0101 -6.7013 -2.5032 17 6 -0.2031 -7.9256 -3.0323 18 8 0.1455 -8.9128 -2.4201 19 6 -0.8531 -8.0681 -4.3845 20 6 -0.0373 -7.3326 -5.4495 21 9 1.2470 -7.8835 -5.5162 22 9 -0.6663 -7.4642 -6.6922 23 9 0.0534 -5.9774 -5.1140 24 6 -2.3053 -7.5309 -4.3472 25 6 -3.0892 -8.7175 -3.7247 26 6 -2.4286 -9.9706 -4.3360 27 6 -1.0069 -9.5576 -4.7554 28 6 1.9998 -4.4027 -1.3453 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 0.4936 -4.5195 1.3040 32 1 1.8863 -5.6371 0.9724 33 1 0.0209 -7.0809 -0.4406 34 1 1.6203 -6.9979 -1.2174 35 1 -0.2886 -5.9117 -2.9930 36 1 -2.3736 -6.6456 -3.7150 37 1 -2.6640 -7.3165 -5.3539 38 1 -4.1418 -8.6669 -4.0032 39 1 -2.9802 -8.7194 -2.6402 40 1 -2.9932 -10.3030 -5.2070 41 1 -2.3823 -10.7677 -3.5940 42 1 -0.8815 -9.6897 -5.8300 43 1 -0.2706 -10.1544 -4.2170 44 1 2.8290 -5.0935 -1.4975 45 1 1.8299 -3.7488 -2.2007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565880474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:46 Heat of formation + Delta-G solvation = -189.654548 kcal Electronic energy + Delta-G solvation = -30263.286207 eV Core-core repulsion = 25672.177605 eV Total energy + Delta-G solvation = -4591.108602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 5.72 seconds Orbital eigenvalues (eV) -51.34527 -48.83624 -48.78715 -41.59797 -40.12133 -38.25432 -36.12561 -35.04374 -32.32369 -31.67048 -29.93910 -28.64155 -26.45181 -25.96745 -25.70952 -23.91826 -22.86836 -21.66617 -21.14993 -20.07553 -19.63307 -19.35394 -19.33154 -19.06311 -17.62424 -17.28118 -16.75399 -16.50930 -16.15208 -15.84249 -15.67543 -15.58143 -15.56083 -15.27221 -15.17982 -14.96063 -14.90656 -14.70008 -14.64079 -14.39099 -14.28589 -13.74546 -13.30875 -12.96800 -12.93715 -12.80643 -12.67450 -12.54657 -12.42806 -12.19028 -12.15432 -12.13743 -12.05902 -11.61948 -11.50098 -11.39590 -11.14618 -10.93013 -10.78813 -10.20822 -9.00374 -7.95947 -5.23975 1.01736 1.47783 1.48076 1.58084 1.68313 1.84188 2.54015 2.55324 2.64991 2.87232 3.36707 3.38704 3.40302 3.51817 3.70571 3.75494 3.87142 4.06531 4.13214 4.18362 4.27462 4.30911 4.35133 4.38770 4.58849 4.68943 4.69429 4.72806 4.90054 4.91441 4.94164 4.97852 5.08802 5.12294 5.17803 5.19477 5.32946 5.37387 5.43733 5.52573 5.64706 6.27564 6.28258 6.92183 7.33213 8.10016 8.32461 9.27480 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017512 B = 0.002738 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.487843 B =10224.841321 C =10662.356816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.060 0.940 12 C -0.131 4.131 13 C -0.104 4.104 14 H 0.082 0.918 15 C 0.138 3.862 16 N -0.714 5.714 17 C 0.527 3.473 18 O -0.548 6.548 19 C -0.134 4.134 20 C 0.465 3.535 21 F -0.185 7.185 22 F -0.167 7.167 23 F -0.180 7.180 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.108 4.108 28 C -0.157 4.157 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -21.588 -11.533 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.078 0.922 12 C -0.170 4.170 13 C -0.122 4.122 14 H 0.100 0.900 15 C 0.015 3.985 16 N -0.367 5.367 17 C 0.312 3.688 18 O -0.426 6.426 19 C -0.138 4.138 20 C 0.411 3.589 21 F -0.167 7.167 22 F -0.148 7.148 23 F -0.162 7.162 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.152 4.152 27 C -0.145 4.145 28 C -0.198 4.198 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.188 -22.124 -11.083 25.282 hybrid contribution 0.227 1.795 -0.387 1.850 sum -4.961 -20.329 -11.470 23.862 Atomic orbital electron populations 1.69810 1.06498 1.25983 1.59536 1.25530 0.96393 1.00967 1.03768 0.85107 0.78266 0.79979 0.76615 1.19140 1.22138 1.22058 1.19694 0.91495 0.85198 1.40945 0.90652 1.42303 1.05354 1.00550 1.87575 1.21373 0.95150 0.84983 0.95071 0.92200 1.23330 0.99970 0.98569 0.95171 1.22510 0.98317 0.93599 0.97812 0.89956 1.21422 0.98064 0.95835 0.83134 1.46202 1.61081 1.08148 1.21222 1.19845 0.78514 0.83492 0.86983 1.90688 1.51149 1.38175 1.62552 1.23142 0.98779 1.01500 0.90428 1.20209 0.78519 0.77470 0.82743 1.93210 1.41465 1.85366 1.96611 1.93193 1.81781 1.95559 1.44304 1.93175 1.96269 1.34747 1.91969 1.22868 0.87555 0.99763 1.04842 1.22421 1.00735 0.92698 0.99812 1.22091 0.93249 0.98062 1.01827 1.22234 1.00597 0.88849 1.02866 1.23745 0.97429 0.99335 0.99261 0.94010 0.79296 0.92097 0.87460 0.90804 0.91124 0.75341 0.89536 0.87213 0.88168 0.92316 0.88877 0.91157 0.88890 0.90167 0.89160 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.24 9.97 84.04 0.84 -12.40 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.39 5.31 -320.44 -1.70 -37.10 16 10 C 0.14 5.46 4.56 45.52 0.21 5.67 16 11 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 12 C -0.13 -3.89 7.39 31.12 0.23 -3.66 16 13 C -0.10 -2.91 3.63 -10.27 -0.04 -2.95 16 14 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 15 C 0.14 3.37 5.51 86.38 0.48 3.85 16 16 N -0.71 -16.72 5.06 -463.06 -2.35 -19.07 16 17 C 0.53 12.69 6.09 87.66 0.53 13.22 16 18 O -0.55 -16.24 15.43 -3.03 -0.05 -16.28 16 19 C -0.13 -2.48 0.32 -51.85 -0.02 -2.50 16 20 C 0.47 9.46 2.23 71.98 0.16 9.62 16 21 F -0.19 -4.37 16.88 44.97 0.76 -3.62 16 22 F -0.17 -3.04 15.78 44.97 0.71 -2.33 16 23 F -0.18 -4.00 14.96 44.97 0.67 -3.33 16 24 C -0.11 -1.57 5.64 32.01 0.18 -1.39 16 25 C -0.12 -1.48 6.62 31.79 0.21 -1.27 16 26 C -0.11 -1.41 6.80 31.32 0.21 -1.19 16 27 C -0.11 -1.74 5.49 31.32 0.17 -1.57 16 28 C -0.16 -5.06 7.43 31.12 0.23 -4.83 16 29 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.37 19.65 7.90 -92.71 -0.73 18.92 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 2.58 8.10 -2.39 -0.02 2.56 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.75 7.84 -2.39 -0.02 1.73 16 35 H 0.41 9.09 6.41 -92.71 -0.59 8.50 16 36 H 0.09 1.22 7.64 -2.39 -0.02 1.21 16 37 H 0.11 1.20 7.42 -2.39 -0.02 1.18 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.25 7.29 -2.39 -0.02 1.23 16 43 H 0.08 1.61 6.86 -2.38 -0.02 1.60 16 44 H 0.09 2.53 7.90 -2.39 -0.02 2.51 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.70 371.28 3.92 -61.78 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.30 Total: 33.29 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 3.87 Total: -3.14 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -3.76 Total: -114.14 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.05 Total: -16.28 kcal Atomic # 9 Polarization: -11.41 SS G_CDS: 2.14 Total: -9.27 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -65.70 3.92 -61.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565880474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.877 kcal (2) G-P(sol) polarization free energy of solvation -65.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.72 seconds