Wall clock time and date at job start Tue Mar 31 2020 22:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48504 * 109.46817 * 274.89298 * 3 2 1 5 5 H 1.48500 * 109.47407 * 34.89217 * 3 2 1 6 6 H 1.48496 * 109.47095 * 154.89904 * 3 2 1 7 7 C 1.38813 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00174 * 339.76247 * 7 2 1 9 9 N 1.36941 * 119.99682 * 159.75167 * 7 2 1 10 10 C 1.46917 * 120.63428 * 332.80377 * 9 7 2 11 11 C 1.53192 * 108.77406 * 233.60510 * 10 9 7 12 12 C 1.53037 * 109.31438 * 305.36393 * 11 10 9 13 13 C 1.53036 * 109.53761 * 61.36386 * 12 11 10 14 14 H 1.08999 * 109.49800 * 58.61918 * 13 12 11 15 15 N 1.46506 * 109.49948 * 178.68859 * 13 12 11 16 16 C 1.34777 * 119.99927 * 205.00342 * 15 13 12 17 17 O 1.21279 * 119.99994 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99644 * 179.97438 * 16 15 13 19 19 C 1.53003 * 110.05205 * 58.58513 * 18 16 15 20 20 F 1.39905 * 109.46615 * 181.41341 * 19 18 16 21 21 F 1.39897 * 109.47183 * 301.41130 * 19 18 16 22 22 F 1.39893 * 109.47475 * 61.41875 * 19 18 16 23 23 C 1.53876 * 110.02893 * 179.97438 * 18 16 15 24 24 C 1.54267 * 106.59489 * 119.28860 * 23 18 16 25 25 C 1.54886 * 104.31284 * 336.32079 * 24 23 18 26 26 C 1.54257 * 110.03426 * 297.16718 * 18 16 15 27 27 C 1.46925 * 120.62586 * 152.79424 * 9 7 2 28 28 H 0.97000 * 119.99870 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.59092 * 113.81629 * 10 9 7 30 30 H 1.09009 * 109.58967 * 353.38804 * 10 9 7 31 31 H 1.09004 * 109.50118 * 185.41029 * 11 10 9 32 32 H 1.09006 * 109.50060 * 65.31672 * 11 10 9 33 33 H 1.09003 * 109.45932 * 301.34705 * 12 11 10 34 34 H 1.09002 * 109.45039 * 181.38021 * 12 11 10 35 35 H 0.96996 * 119.99768 * 24.99359 * 15 13 12 36 36 H 1.09000 * 110.03278 * 0.02562 * 23 18 16 37 37 H 1.08998 * 110.07313 * 238.59189 * 23 18 16 38 38 H 1.09003 * 110.48675 * 95.06747 * 24 23 18 39 39 H 1.08998 * 110.48641 * 217.57819 * 24 23 18 40 40 H 1.09004 * 110.75314 * 156.32402 * 25 24 23 41 41 H 1.08996 * 110.76128 * 279.69379 * 25 24 23 42 42 H 1.08998 * 110.48827 * 23.00156 * 26 18 16 43 43 H 1.08996 * 110.49018 * 145.65104 * 26 18 16 44 44 H 1.09000 * 109.58949 * 6.61465 * 27 9 7 45 45 H 1.08992 * 109.59048 * 246.18527 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1061 -1.3950 5 1 1.5032 2.6206 0.8009 6 1 3.5956 1.4125 0.5939 7 6 2.0103 -1.2022 0.0005 8 1 1.5203 -2.1085 0.3245 9 7 3.3162 -1.2389 -0.4099 10 6 3.8268 -0.2523 -1.3713 11 6 4.4779 -0.9958 -2.5418 12 6 5.5404 -1.9565 -2.0031 13 6 4.8800 -2.9867 -1.0840 14 1 4.1165 -3.5324 -1.6385 15 7 5.8927 -3.9249 -0.5936 16 6 5.5320 -5.1648 -0.2076 17 8 4.3689 -5.5037 -0.2659 18 6 6.5738 -6.1300 0.2963 19 6 7.2911 -5.5400 1.5122 20 9 8.2766 -6.4313 1.9500 21 9 7.8859 -4.3242 1.1583 22 9 6.3668 -5.3253 2.5401 23 6 5.9144 -7.4685 0.6721 24 6 6.5553 -8.5439 -0.2293 25 6 7.0724 -7.7551 -1.4579 26 6 7.5927 -6.4382 -0.8201 27 6 4.2334 -2.2657 0.1031 28 1 -0.4850 0.8401 -0.0004 29 1 4.5670 0.3829 -0.8848 30 1 3.0031 0.3592 -1.7398 31 1 4.9453 -0.2768 -3.2148 32 1 3.7179 -1.5599 -3.0825 33 1 6.2868 -1.3947 -1.4416 34 1 6.0222 -2.4689 -2.8359 35 1 6.8228 -3.6537 -0.5468 36 1 4.8408 -7.4201 0.4896 37 1 6.1049 -7.6981 1.7205 38 1 7.3824 -9.0310 0.2870 39 1 5.8108 -9.2794 -0.5340 40 1 7.8814 -8.2945 -1.9506 41 1 6.2606 -7.5519 -2.1563 42 1 7.6046 -5.6359 -1.5578 43 1 8.5872 -6.5854 -0.3991 44 1 3.6779 -2.9828 0.7075 45 1 5.0067 -1.7948 0.7098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566634720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:40 Heat of formation + Delta-G solvation = -173.857239 kcal Electronic energy + Delta-G solvation = -31425.151201 eV Core-core repulsion = 26834.727622 eV Total energy + Delta-G solvation = -4590.423579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.43114 -47.93117 -47.82463 -40.56094 -38.28351 -37.06176 -34.61318 -32.61596 -31.13734 -30.85026 -29.40953 -28.78247 -25.32941 -25.10789 -23.54250 -22.02604 -21.79866 -21.08355 -20.21929 -19.64852 -18.76384 -18.47604 -18.12744 -16.89069 -16.63232 -16.08924 -15.52349 -15.18244 -14.87333 -14.72194 -14.65887 -14.46611 -14.25317 -14.09536 -13.99332 -13.92720 -13.79393 -13.59234 -13.41275 -13.23877 -12.87352 -12.47560 -12.20697 -12.02683 -11.72533 -11.57563 -11.55441 -11.52317 -11.40680 -11.18080 -10.95942 -10.87526 -10.77772 -10.17280 -10.05206 -9.87489 -9.73304 -9.46320 -9.09901 -8.55529 -6.97716 -5.91870 -3.28919 2.05894 2.70466 2.87826 3.32215 3.42527 3.49322 3.51849 3.57126 3.79278 4.17430 4.23832 4.48242 4.54491 4.73129 4.86131 4.95657 5.00356 5.05090 5.13246 5.23949 5.24830 5.33115 5.40184 5.49446 5.53385 5.61951 5.73120 5.77383 5.78942 5.89871 5.99582 6.03799 6.16823 6.28060 6.38342 6.43305 6.57705 6.62109 6.73190 6.89887 7.45503 7.96890 8.12095 8.36240 8.95936 9.73707 10.08923 11.24031 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.003515 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.875834 B = 7963.007505 C = 8053.608119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.122 3.878 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.124 3.876 14 H 0.093 0.907 15 N -0.716 5.716 16 C 0.524 3.476 17 O -0.505 6.505 18 C -0.132 4.132 19 C 0.465 3.535 20 F -0.175 7.175 21 F -0.178 7.178 22 F -0.171 7.171 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.114 4.114 27 C 0.144 3.856 28 H 0.262 0.738 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.491 -14.580 -2.724 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.105 0.895 9 N -0.324 5.324 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.019 3.981 14 H 0.111 0.889 15 N -0.368 5.368 16 C 0.306 3.694 17 O -0.379 6.379 18 C -0.137 4.137 19 C 0.410 3.590 20 F -0.156 7.156 21 F -0.160 7.160 22 F -0.152 7.152 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.152 4.152 27 C 0.017 3.983 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.234 0.766 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 19.463 -14.695 -2.705 24.537 hybrid contribution 1.090 1.376 0.370 1.795 sum 20.553 -13.319 -2.335 24.602 Atomic orbital electron populations 1.69839 1.05705 1.26482 1.53052 1.25255 0.95219 0.97492 0.99522 0.86945 0.80130 0.84712 0.76879 1.21672 1.23159 1.19515 1.18955 0.84516 0.94914 1.40344 0.89535 1.44279 1.08517 1.32193 1.47454 1.21405 0.97343 0.92078 0.89544 1.22002 0.97798 0.98298 0.99023 1.21684 0.98462 0.96961 0.98333 1.21801 0.89836 0.89288 0.97149 0.88858 1.46235 1.12303 1.12715 1.65586 1.19520 0.88767 0.82300 0.78785 1.90755 1.18107 1.76244 1.52841 1.22896 0.97609 0.99155 0.94050 1.20158 0.77597 0.76085 0.85123 1.93180 1.63624 1.68089 1.90743 1.93133 1.84802 1.46433 1.91623 1.93253 1.65619 1.94755 1.61592 1.22293 1.03223 0.89079 1.00650 1.22355 1.00469 0.97373 0.95593 1.22555 1.01075 0.94390 0.97729 1.22596 0.97096 0.99955 0.95506 1.21208 0.92801 0.91416 0.92905 0.92774 0.95516 0.90792 0.92133 0.91340 0.91981 0.92345 0.76587 0.87276 0.90390 0.91062 0.90507 0.90351 0.90581 0.89681 0.89336 0.91397 0.95866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.30 13.97 55.49 0.78 -27.53 16 2 C 0.02 0.70 5.24 -17.43 -0.09 0.61 16 3 Si 0.88 22.53 24.35 -169.99 -4.14 18.40 16 4 H -0.29 -7.05 6.70 56.52 0.38 -6.68 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.75 6.45 56.52 0.36 -6.39 16 7 C -0.26 -7.46 10.04 -15.06 -0.15 -7.61 16 8 H 0.09 2.71 8.05 -52.49 -0.42 2.28 16 9 N -0.60 -14.56 2.77 -172.32 -0.48 -15.04 16 10 C 0.12 2.62 4.19 -3.72 -0.02 2.61 16 11 C -0.13 -2.21 6.08 -26.61 -0.16 -2.38 16 12 C -0.12 -1.68 5.35 -26.69 -0.14 -1.82 16 13 C 0.12 2.08 2.61 -67.81 -0.18 1.90 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 15 N -0.72 -9.76 4.47 -53.68 -0.24 -10.00 16 16 C 0.52 7.51 6.19 -10.99 -0.07 7.44 16 17 O -0.51 -9.23 14.87 5.56 0.08 -9.15 16 18 C -0.13 -1.43 0.38 -154.54 -0.06 -1.48 16 19 C 0.46 5.25 2.04 37.16 0.08 5.32 16 20 F -0.18 -1.78 16.07 2.25 0.04 -1.74 16 21 F -0.18 -1.97 14.82 2.25 0.03 -1.94 16 22 F -0.17 -2.33 16.65 2.25 0.04 -2.29 16 23 C -0.11 -1.17 5.69 -25.61 -0.15 -1.32 16 24 C -0.12 -0.91 6.82 -25.07 -0.17 -1.08 16 25 C -0.12 -0.87 6.94 -24.52 -0.17 -1.04 16 26 C -0.11 -0.90 5.64 -24.86 -0.14 -1.04 16 27 C 0.14 2.99 6.09 -3.71 -0.02 2.97 16 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.03 0.57 6.98 -51.93 -0.36 0.20 16 30 H 0.07 1.75 4.50 -51.92 -0.23 1.52 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 4.45 6.58 -40.82 -0.27 4.18 16 36 H 0.11 1.35 6.39 -51.93 -0.33 1.02 16 37 H 0.08 0.75 7.32 -51.93 -0.38 0.37 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.63 7.50 -51.93 -0.39 0.24 16 43 H 0.09 0.59 7.25 -51.93 -0.38 0.21 16 44 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -32.58 353.20 -6.58 -39.16 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.57 Total: 1.72 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.44 Total: 3.09 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.06 Total: -52.57 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.11 Total: -5.97 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.58 -6.58 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566634720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.698 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds