Wall clock time and date at job start Tue Mar 31 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48504 * 109.46817 * 274.89298 * 3 2 1 5 5 H 1.48500 * 109.47407 * 34.89217 * 3 2 1 6 6 H 1.48496 * 109.47095 * 154.89904 * 3 2 1 7 7 C 1.38813 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00174 * 339.76247 * 7 2 1 9 9 N 1.36941 * 119.99682 * 159.75167 * 7 2 1 10 10 C 1.46917 * 120.63428 * 332.80377 * 9 7 2 11 11 C 1.53192 * 108.77406 * 233.60510 * 10 9 7 12 12 C 1.53037 * 109.31438 * 305.36393 * 11 10 9 13 13 C 1.53036 * 109.53761 * 61.36386 * 12 11 10 14 14 H 1.08999 * 109.49800 * 58.61918 * 13 12 11 15 15 N 1.46506 * 109.49948 * 178.68859 * 13 12 11 16 16 C 1.34777 * 119.99927 * 205.00342 * 15 13 12 17 17 O 1.21279 * 119.99994 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99644 * 179.97438 * 16 15 13 19 19 C 1.53003 * 110.05205 * 58.58513 * 18 16 15 20 20 F 1.39905 * 109.46615 * 181.41341 * 19 18 16 21 21 F 1.39897 * 109.47183 * 301.41130 * 19 18 16 22 22 F 1.39893 * 109.47475 * 61.41875 * 19 18 16 23 23 C 1.53876 * 110.02893 * 179.97438 * 18 16 15 24 24 C 1.54267 * 106.59489 * 119.28860 * 23 18 16 25 25 C 1.54886 * 104.31284 * 336.32079 * 24 23 18 26 26 C 1.54257 * 110.03426 * 297.16718 * 18 16 15 27 27 C 1.46925 * 120.62586 * 152.79424 * 9 7 2 28 28 H 0.97000 * 119.99870 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.59092 * 113.81629 * 10 9 7 30 30 H 1.09009 * 109.58967 * 353.38804 * 10 9 7 31 31 H 1.09004 * 109.50118 * 185.41029 * 11 10 9 32 32 H 1.09006 * 109.50060 * 65.31672 * 11 10 9 33 33 H 1.09003 * 109.45932 * 301.34705 * 12 11 10 34 34 H 1.09002 * 109.45039 * 181.38021 * 12 11 10 35 35 H 0.96996 * 119.99768 * 24.99359 * 15 13 12 36 36 H 1.09000 * 110.03278 * 0.02562 * 23 18 16 37 37 H 1.08998 * 110.07313 * 238.59189 * 23 18 16 38 38 H 1.09003 * 110.48675 * 95.06747 * 24 23 18 39 39 H 1.08998 * 110.48641 * 217.57819 * 24 23 18 40 40 H 1.09004 * 110.75314 * 156.32402 * 25 24 23 41 41 H 1.08996 * 110.76128 * 279.69379 * 25 24 23 42 42 H 1.08998 * 110.48827 * 23.00156 * 26 18 16 43 43 H 1.08996 * 110.49018 * 145.65104 * 26 18 16 44 44 H 1.09000 * 109.58949 * 6.61465 * 27 9 7 45 45 H 1.08992 * 109.59048 * 246.18527 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1061 -1.3950 5 1 1.5032 2.6206 0.8009 6 1 3.5956 1.4125 0.5939 7 6 2.0103 -1.2022 0.0005 8 1 1.5203 -2.1085 0.3245 9 7 3.3162 -1.2389 -0.4099 10 6 3.8268 -0.2523 -1.3713 11 6 4.4779 -0.9958 -2.5418 12 6 5.5404 -1.9565 -2.0031 13 6 4.8800 -2.9867 -1.0840 14 1 4.1165 -3.5324 -1.6385 15 7 5.8927 -3.9249 -0.5936 16 6 5.5320 -5.1648 -0.2076 17 8 4.3689 -5.5037 -0.2659 18 6 6.5738 -6.1300 0.2963 19 6 7.2911 -5.5400 1.5122 20 9 8.2766 -6.4313 1.9500 21 9 7.8859 -4.3242 1.1583 22 9 6.3668 -5.3253 2.5401 23 6 5.9144 -7.4685 0.6721 24 6 6.5553 -8.5439 -0.2293 25 6 7.0724 -7.7551 -1.4579 26 6 7.5927 -6.4382 -0.8201 27 6 4.2334 -2.2657 0.1031 28 1 -0.4850 0.8401 -0.0004 29 1 4.5670 0.3829 -0.8848 30 1 3.0031 0.3592 -1.7398 31 1 4.9453 -0.2768 -3.2148 32 1 3.7179 -1.5599 -3.0825 33 1 6.2868 -1.3947 -1.4416 34 1 6.0222 -2.4689 -2.8359 35 1 6.8228 -3.6537 -0.5468 36 1 4.8408 -7.4201 0.4896 37 1 6.1049 -7.6981 1.7205 38 1 7.3824 -9.0310 0.2870 39 1 5.8108 -9.2794 -0.5340 40 1 7.8814 -8.2945 -1.9506 41 1 6.2606 -7.5519 -2.1563 42 1 7.6046 -5.6359 -1.5578 43 1 8.5872 -6.5854 -0.3991 44 1 3.6779 -2.9828 0.7075 45 1 5.0067 -1.7948 0.7098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566634720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:39 Heat of formation + Delta-G solvation = -195.572717 kcal Electronic energy + Delta-G solvation = -31426.092855 eV Core-core repulsion = 26834.727622 eV Total energy + Delta-G solvation = -4591.365233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = -3.76 seconds Orbital eigenvalues (eV) -51.34942 -48.83007 -48.77251 -41.67789 -39.63138 -38.16969 -36.14553 -34.38376 -32.74294 -32.10293 -30.52495 -29.73071 -27.25189 -25.98944 -24.81783 -23.77616 -22.95862 -21.82496 -21.51598 -20.87712 -19.76048 -19.38756 -19.09403 -18.81837 -17.65261 -17.41642 -17.17530 -16.32290 -16.13277 -15.79937 -15.61378 -15.55782 -15.45404 -15.35043 -15.19121 -15.01087 -14.94045 -14.80357 -14.62775 -14.44097 -14.18299 -14.13813 -13.76393 -13.34521 -12.96687 -12.82510 -12.65211 -12.50410 -12.45685 -12.27506 -12.14715 -12.06299 -11.87166 -11.72063 -11.56120 -11.47475 -11.39514 -11.11025 -10.80213 -10.30242 -8.97011 -8.19643 -5.54166 1.02078 1.28225 1.40761 1.50653 1.69562 1.76095 2.39140 2.53656 2.68127 2.85085 3.04135 3.29915 3.40363 3.41023 3.59973 3.79344 3.99158 4.06346 4.10114 4.18384 4.27130 4.28913 4.37756 4.39050 4.61530 4.63383 4.65436 4.72661 4.87708 4.89966 4.96591 4.99407 5.01015 5.04661 5.13086 5.16260 5.16403 5.28305 5.40215 5.47664 5.81217 6.07816 6.31819 6.86147 7.00562 7.56672 7.94341 9.00696 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.003515 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.875834 B = 7963.007505 C = 8053.608119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.035 4.035 3 Si 0.958 3.042 4 H -0.266 1.266 5 H -0.311 1.311 6 H -0.257 1.257 7 C -0.257 4.257 8 H 0.036 0.964 9 N -0.616 5.616 10 C 0.112 3.888 11 C -0.125 4.125 12 C -0.107 4.107 13 C 0.137 3.863 14 H 0.062 0.938 15 N -0.703 5.703 16 C 0.521 3.479 17 O -0.553 6.553 18 C -0.126 4.126 19 C 0.466 3.534 20 F -0.164 7.164 21 F -0.175 7.175 22 F -0.190 7.190 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.111 4.111 27 C 0.144 3.856 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.415 0.585 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.028 0.972 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.174 -14.180 -4.253 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.230 4.230 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.240 1.240 6 H -0.181 1.181 7 C -0.387 4.387 8 H 0.054 0.946 9 N -0.341 5.341 10 C -0.012 4.012 11 C -0.165 4.165 12 C -0.145 4.145 13 C 0.031 3.969 14 H 0.081 0.919 15 N -0.356 5.356 16 C 0.305 3.695 17 O -0.431 6.431 18 C -0.131 4.131 19 C 0.411 3.589 20 F -0.145 7.145 21 F -0.156 7.156 22 F -0.171 7.171 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.148 4.148 27 C 0.018 3.982 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.254 0.746 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.047 0.953 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 24.234 -14.308 -4.253 28.463 hybrid contribution -0.422 1.130 0.907 1.509 sum 23.812 -13.178 -3.347 27.421 Atomic orbital electron populations 1.69991 1.07693 1.27470 1.55334 1.25977 0.95923 1.01379 0.99710 0.85742 0.78737 0.79088 0.77866 1.19233 1.23975 1.18100 1.18777 0.86693 0.93354 1.39876 0.94618 1.44341 1.07317 1.33725 1.48725 1.21571 0.97070 0.91938 0.90614 1.21924 0.98072 0.99040 0.97434 1.21667 0.97857 0.95893 0.99041 1.21373 0.90262 0.89830 0.95427 0.91931 1.46041 1.12469 1.12048 1.65067 1.20161 0.88892 0.82733 0.77708 1.90749 1.20502 1.77196 1.54621 1.22906 0.97332 0.97936 0.94894 1.20184 0.77598 0.76352 0.84730 1.93201 1.62987 1.67680 1.90613 1.93133 1.84661 1.46289 1.91508 1.93223 1.66480 1.94899 1.62520 1.22325 1.01742 0.90043 1.01678 1.22378 1.00994 0.96579 0.95342 1.22579 1.01462 0.94217 0.97252 1.22734 0.96960 1.00595 0.94506 1.21257 0.92161 0.90292 0.94520 0.92769 0.93873 0.93130 0.88134 0.92975 0.89672 0.88529 0.74577 0.90236 0.90065 0.89050 0.90259 0.87583 0.92084 0.88767 0.87083 0.95277 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.55 13.97 21.65 0.30 -62.25 16 2 C -0.04 -2.14 5.24 84.86 0.44 -1.70 16 3 Si 0.96 47.14 24.35 68.60 1.67 48.81 16 4 H -0.27 -12.04 6.70 99.48 0.67 -11.38 16 5 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 6 H -0.26 -11.94 6.45 99.48 0.64 -11.29 16 7 C -0.26 -15.62 10.04 84.03 0.84 -14.78 16 8 H 0.04 2.46 8.05 -2.91 -0.02 2.43 16 9 N -0.62 -30.34 2.77 -699.11 -1.94 -32.28 16 10 C 0.11 4.61 4.19 86.36 0.36 4.97 16 11 C -0.13 -3.81 6.08 30.67 0.19 -3.63 16 12 C -0.11 -2.65 5.35 30.62 0.16 -2.49 16 13 C 0.14 4.49 2.61 45.07 0.12 4.61 16 14 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 15 N -0.70 -18.16 4.47 -442.15 -1.98 -20.14 16 16 C 0.52 14.94 6.19 87.66 0.54 15.49 16 17 O -0.55 -21.46 14.87 -3.03 -0.05 -21.51 16 18 C -0.13 -2.56 0.38 -52.20 -0.02 -2.58 16 19 C 0.47 9.75 2.04 71.98 0.15 9.89 16 20 F -0.16 -2.90 16.07 44.97 0.72 -2.18 16 21 F -0.17 -3.39 14.82 44.97 0.67 -2.73 16 22 F -0.19 -5.15 16.65 44.97 0.75 -4.40 16 23 C -0.12 -2.42 5.69 31.32 0.18 -2.24 16 24 C -0.12 -1.51 6.82 31.67 0.22 -1.30 16 25 C -0.12 -1.37 6.94 32.03 0.22 -1.15 16 26 C -0.11 -1.39 5.64 31.81 0.18 -1.21 16 27 C 0.14 6.11 6.09 86.37 0.53 6.63 16 28 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 29 H 0.04 1.65 6.98 -2.39 -0.02 1.64 16 30 H 0.05 2.31 4.50 -2.38 -0.01 2.30 16 31 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.42 7.94 6.58 -92.71 -0.61 7.33 16 36 H 0.08 2.10 6.39 -2.39 -0.02 2.09 16 37 H 0.08 1.53 7.32 -2.39 -0.02 1.52 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.04 7.50 -2.39 -0.02 1.03 16 43 H 0.11 0.97 7.25 -2.39 -0.02 0.95 16 44 H 0.03 1.41 7.93 -2.39 -0.02 1.40 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -77.26 353.20 4.56 -72.70 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.30 Total: 13.45 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 4.11 Total: 10.53 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -3.61 Total: -114.67 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 9 Polarization: -11.45 SS G_CDS: 2.14 Total: -9.31 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.67 Total: 48.81 kcal Total: -77.26 4.56 -72.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566634720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.871 kcal (2) G-P(sol) polarization free energy of solvation -77.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.76 seconds