Wall clock time and date at job start Tue Mar 31 2020 23:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47158 * 269.99403 * 3 2 1 5 5 H 1.48493 * 109.47240 * 29.99976 * 3 2 1 6 6 H 1.48503 * 109.47095 * 150.00034 * 3 2 1 7 7 C 1.38809 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99935 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99809 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99856 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47488 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47593 * 180.02562 * 11 10 9 13 13 C 1.38232 * 120.00016 * 89.99284 * 12 11 10 14 14 C 1.38238 * 119.99865 * 179.97438 * 13 12 11 15 15 C 1.38240 * 119.99859 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99743 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.46832 * 90.00087 * 16 15 14 18 18 C 1.34783 * 120.00243 * 179.97438 * 17 16 15 19 19 O 1.21285 * 119.99120 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00441 * 180.02562 * 18 17 16 21 21 H 1.08998 * 109.57603 * 54.83678 * 20 18 17 22 22 C 1.53141 * 109.52330 * 294.67549 * 20 18 17 23 23 O 1.43077 * 109.15079 * 184.78349 * 22 20 18 24 24 C 1.43214 * 113.62560 * 57.95648 * 23 22 20 25 25 C 1.53149 * 109.07504 * 302.08450 * 24 23 22 26 26 O 1.43077 * 109.52221 * 175.00209 * 20 18 17 27 27 C 1.38235 * 120.00286 * 0.27810 * 15 14 13 28 28 C 1.38234 * 119.99388 * 359.51150 * 27 15 14 29 29 H 0.97000 * 119.99846 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00244 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47182 * 59.99537 * 10 9 7 32 32 H 1.09001 * 109.46911 * 299.99849 * 10 9 7 33 33 H 1.09002 * 109.47428 * 59.99514 * 11 10 9 34 34 H 1.08999 * 109.47046 * 300.00216 * 11 10 9 35 35 H 1.07998 * 120.00006 * 359.97438 * 13 12 11 36 36 H 1.08000 * 120.00053 * 180.02562 * 14 13 12 37 37 H 1.08997 * 109.47313 * 330.00627 * 16 15 14 38 38 H 1.08994 * 109.46840 * 210.00464 * 16 15 14 39 39 H 0.97006 * 120.00685 * 0.02562 * 17 16 15 40 40 H 1.09002 * 109.52617 * 304.68790 * 22 20 18 41 41 H 1.09004 * 109.52794 * 64.81782 * 22 20 18 42 42 H 1.09001 * 109.61762 * 182.17442 * 24 23 22 43 43 H 1.08997 * 109.51292 * 61.93140 * 24 23 22 44 44 H 1.09002 * 109.52454 * 295.34871 * 25 24 23 45 45 H 1.08995 * 109.52435 * 175.22034 * 25 24 23 46 46 H 1.07994 * 120.00011 * 179.72701 * 27 15 14 47 47 H 1.08001 * 119.99974 * 180.27642 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1913 0.0024 12 6 6.3699 -3.4963 0.0017 13 6 6.7162 -4.0939 -1.1957 14 6 7.4080 -5.2907 -1.1962 15 6 7.7538 -5.8897 0.0007 16 6 8.5084 -7.1942 0.0001 17 7 9.9484 -6.9253 0.0005 18 6 10.8252 -7.9489 0.0006 19 8 10.4218 -9.0927 -0.0001 20 6 12.3066 -7.6723 0.0017 21 1 12.5565 -7.0243 0.8417 22 6 12.6999 -6.9855 -1.3093 23 8 14.1214 -6.8275 -1.3484 24 6 14.8394 -8.0611 -1.2310 25 6 14.4446 -8.7472 0.0800 26 8 13.0231 -8.9052 0.1191 27 6 7.4029 -5.2948 1.1981 28 6 6.7150 -4.0958 1.1986 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8492 -3.0422 -0.8891 32 1 3.8485 -3.0425 0.8909 33 1 5.8791 -1.6200 0.8928 34 1 5.8804 -1.6193 -0.8871 35 1 6.4464 -3.6257 -2.1308 36 1 7.6789 -5.7574 -2.1318 37 1 8.2458 -7.7655 -0.8903 38 1 8.2453 -7.7665 0.8896 39 1 10.2711 -6.0105 0.0015 40 1 12.3781 -7.5973 -2.1520 41 1 12.2221 -6.0074 -1.3658 42 1 15.9111 -7.8620 -1.2296 43 1 14.5894 -8.7092 -2.0710 44 1 14.7664 -8.1353 0.9227 45 1 14.9215 -9.7256 0.1371 46 1 7.6692 -5.7650 2.1331 47 1 6.4448 -3.6286 2.1341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567181789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:07 Heat of formation + Delta-G solvation = -87.232033 kcal Electronic energy + Delta-G solvation = -27194.181896 eV Core-core repulsion = 23149.371408 eV Total energy + Delta-G solvation = -4044.810488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.01361 -39.86720 -39.11956 -36.63547 -35.95205 -34.94061 -33.10968 -32.27176 -31.11851 -31.04548 -29.31761 -28.33751 -26.11762 -25.24451 -23.38502 -22.84176 -22.41365 -21.48798 -20.98627 -20.64362 -18.37937 -17.65308 -17.59958 -17.12903 -16.68849 -16.18451 -16.04991 -15.82021 -15.72714 -15.30350 -14.90816 -14.71138 -14.49865 -14.05544 -14.03222 -13.77269 -13.58744 -13.46580 -13.02935 -12.94561 -12.79745 -12.69126 -12.43921 -12.22216 -11.56721 -11.46937 -11.36922 -11.33074 -11.20215 -11.00276 -10.71536 -10.71094 -10.27262 -10.17784 -9.82196 -9.61740 -9.54485 -9.03106 -8.91013 -8.68381 -7.26079 -5.78446 -3.14615 1.06041 1.30802 2.08042 2.35251 3.03520 3.35086 3.35317 3.37816 3.43448 3.69280 3.87697 4.16346 4.26272 4.34068 4.38944 4.47835 4.57129 4.59943 4.65835 4.80346 4.83420 4.89842 4.93740 5.02643 5.11387 5.14233 5.33560 5.38840 5.42880 5.52736 5.62047 5.64893 5.73364 5.88786 5.90751 5.97466 6.09185 6.26848 6.28297 6.31843 6.39331 6.49420 6.68311 6.79045 6.88540 6.99626 7.71669 7.97612 8.40280 9.19134 9.91231 10.10869 11.39893 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030089 B = 0.001618 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.362519 B =17299.247270 C =17804.019376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.164 3.836 11 C -0.098 4.098 12 C -0.052 4.052 13 C -0.117 4.117 14 C -0.097 4.097 15 C -0.127 4.127 16 C 0.166 3.834 17 N -0.721 5.721 18 C 0.521 3.479 19 O -0.514 6.514 20 C 0.038 3.962 21 H 0.096 0.904 22 C 0.037 3.963 23 O -0.373 6.373 24 C 0.020 3.980 25 C 0.023 3.977 26 O -0.350 6.350 27 C -0.097 4.097 28 C -0.117 4.117 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.403 0.597 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.121 0.879 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.424 -15.655 -0.910 36.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.037 3.963 11 C -0.136 4.136 12 C -0.053 4.053 13 C -0.135 4.135 14 C -0.116 4.116 15 C -0.128 4.128 16 C 0.044 3.956 17 N -0.375 5.375 18 C 0.305 3.695 19 O -0.388 6.388 20 C -0.024 4.024 21 H 0.113 0.887 22 C -0.040 4.040 23 O -0.291 6.291 24 C -0.057 4.057 25 C -0.054 4.054 26 O -0.268 6.268 27 C -0.116 4.116 28 C -0.135 4.135 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.139 0.861 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 31.877 -16.615 -0.909 35.959 hybrid contribution 0.637 1.672 0.071 1.790 sum 32.514 -14.943 -0.838 35.794 Atomic orbital electron populations 1.69706 1.05106 1.25843 1.57501 1.24685 0.95259 0.97236 1.01989 0.86526 0.79180 0.84905 0.77775 1.21054 1.21681 1.20348 1.19066 0.80587 0.94805 1.43120 0.89213 1.42718 1.04111 1.02181 1.91298 1.20570 0.87441 0.89322 0.98934 1.20915 0.96205 0.93417 1.03054 1.20025 0.95771 0.96476 0.93035 1.21122 0.98668 0.95672 0.98073 1.21023 0.98012 0.95342 0.97219 1.19689 1.02406 0.96842 0.93843 1.20196 0.77869 0.94168 1.03346 1.46047 1.06442 1.09248 1.75799 1.19921 0.86984 0.85535 0.77076 1.90761 1.79560 1.21060 1.47370 1.22582 0.91156 0.88599 1.00086 0.88665 1.23146 0.82702 1.02343 0.95825 1.88160 1.16914 1.29826 1.94204 1.23368 0.97951 0.86717 0.97658 1.23368 0.81511 1.02947 0.97560 1.88241 1.17285 1.27011 1.94307 1.21025 0.97974 0.95333 0.97242 1.21124 0.98694 0.95628 0.98090 0.93035 0.80671 0.95356 0.95415 0.90824 0.90818 0.85636 0.86052 0.90396 0.90407 0.76233 0.91240 0.86987 0.87233 0.91660 0.91711 0.87016 0.86062 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 21.95 27.74 -169.99 -4.71 17.24 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -17.97 5.41 -59.91 -0.32 -18.30 16 10 C 0.16 3.13 6.24 -4.04 -0.03 3.11 16 11 C -0.10 -1.42 5.46 -27.89 -0.15 -1.57 16 12 C -0.05 -0.64 5.13 -104.63 -0.54 -1.18 16 13 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 14 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 15 C -0.13 -1.14 5.25 -104.62 -0.55 -1.68 16 16 C 0.17 1.37 5.80 -5.19 -0.03 1.34 16 17 N -0.72 -5.10 5.52 -61.48 -0.34 -5.44 16 18 C 0.52 4.89 7.18 -10.98 -0.08 4.81 16 19 O -0.51 -7.16 16.51 -14.26 -0.24 -7.40 16 20 C 0.04 0.28 3.25 -27.81 -0.09 0.19 16 21 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 22 C 0.04 0.23 6.30 37.23 0.23 0.46 16 23 O -0.37 -2.62 10.85 -48.80 -0.53 -3.15 16 24 C 0.02 0.10 7.06 37.23 0.26 0.36 16 25 C 0.02 0.12 7.05 37.23 0.26 0.39 16 26 O -0.35 -3.25 10.03 -62.50 -0.63 -3.87 16 27 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 28 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.36 8.24 5.53 -40.82 -0.23 8.01 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.40 1.95 8.40 -40.82 -0.34 1.60 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.44 8.08 -51.93 -0.42 0.02 16 42 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -36.18 392.33 -9.91 -46.09 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.33 Total: 4.45 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.49 Total: -6.91 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.11 Total: -52.36 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.39 Total: -14.42 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.18 -9.91 -46.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567181789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.143 kcal (2) G-P(sol) polarization free energy of solvation -36.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds