Wall clock time and date at job start Tue Mar 31 2020 23:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47158 * 269.99403 * 3 2 1 5 5 H 1.48493 * 109.47240 * 29.99976 * 3 2 1 6 6 H 1.48503 * 109.47095 * 150.00034 * 3 2 1 7 7 C 1.38809 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99935 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99809 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99856 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47488 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47593 * 180.02562 * 11 10 9 13 13 C 1.38232 * 120.00016 * 89.99284 * 12 11 10 14 14 C 1.38238 * 119.99865 * 179.97438 * 13 12 11 15 15 C 1.38240 * 119.99859 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99743 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.46832 * 90.00087 * 16 15 14 18 18 C 1.34783 * 120.00243 * 179.97438 * 17 16 15 19 19 O 1.21285 * 119.99120 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00441 * 180.02562 * 18 17 16 21 21 H 1.08998 * 109.57603 * 54.83678 * 20 18 17 22 22 C 1.53141 * 109.52330 * 294.67549 * 20 18 17 23 23 O 1.43077 * 109.15079 * 184.78349 * 22 20 18 24 24 C 1.43214 * 113.62560 * 57.95648 * 23 22 20 25 25 C 1.53149 * 109.07504 * 302.08450 * 24 23 22 26 26 O 1.43077 * 109.52221 * 175.00209 * 20 18 17 27 27 C 1.38235 * 120.00286 * 0.27810 * 15 14 13 28 28 C 1.38234 * 119.99388 * 359.51150 * 27 15 14 29 29 H 0.97000 * 119.99846 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00244 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47182 * 59.99537 * 10 9 7 32 32 H 1.09001 * 109.46911 * 299.99849 * 10 9 7 33 33 H 1.09002 * 109.47428 * 59.99514 * 11 10 9 34 34 H 1.08999 * 109.47046 * 300.00216 * 11 10 9 35 35 H 1.07998 * 120.00006 * 359.97438 * 13 12 11 36 36 H 1.08000 * 120.00053 * 180.02562 * 14 13 12 37 37 H 1.08997 * 109.47313 * 330.00627 * 16 15 14 38 38 H 1.08994 * 109.46840 * 210.00464 * 16 15 14 39 39 H 0.97006 * 120.00685 * 0.02562 * 17 16 15 40 40 H 1.09002 * 109.52617 * 304.68790 * 22 20 18 41 41 H 1.09004 * 109.52794 * 64.81782 * 22 20 18 42 42 H 1.09001 * 109.61762 * 182.17442 * 24 23 22 43 43 H 1.08997 * 109.51292 * 61.93140 * 24 23 22 44 44 H 1.09002 * 109.52454 * 295.34871 * 25 24 23 45 45 H 1.08995 * 109.52435 * 175.22034 * 25 24 23 46 46 H 1.07994 * 120.00011 * 179.72701 * 27 15 14 47 47 H 1.08001 * 119.99974 * 180.27642 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1913 0.0024 12 6 6.3699 -3.4963 0.0017 13 6 6.7162 -4.0939 -1.1957 14 6 7.4080 -5.2907 -1.1962 15 6 7.7538 -5.8897 0.0007 16 6 8.5084 -7.1942 0.0001 17 7 9.9484 -6.9253 0.0005 18 6 10.8252 -7.9489 0.0006 19 8 10.4218 -9.0927 -0.0001 20 6 12.3066 -7.6723 0.0017 21 1 12.5565 -7.0243 0.8417 22 6 12.6999 -6.9855 -1.3093 23 8 14.1214 -6.8275 -1.3484 24 6 14.8394 -8.0611 -1.2310 25 6 14.4446 -8.7472 0.0800 26 8 13.0231 -8.9052 0.1191 27 6 7.4029 -5.2948 1.1981 28 6 6.7150 -4.0958 1.1986 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8492 -3.0422 -0.8891 32 1 3.8485 -3.0425 0.8909 33 1 5.8791 -1.6200 0.8928 34 1 5.8804 -1.6193 -0.8871 35 1 6.4464 -3.6257 -2.1308 36 1 7.6789 -5.7574 -2.1318 37 1 8.2458 -7.7655 -0.8903 38 1 8.2453 -7.7665 0.8896 39 1 10.2711 -6.0105 0.0015 40 1 12.3781 -7.5973 -2.1520 41 1 12.2221 -6.0074 -1.3658 42 1 15.9111 -7.8620 -1.2296 43 1 14.5894 -8.7092 -2.0710 44 1 14.7664 -8.1353 0.9227 45 1 14.9215 -9.7256 0.1371 46 1 7.6692 -5.7650 2.1331 47 1 6.4448 -3.6286 2.1341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567181789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:06 Heat of formation + Delta-G solvation = -112.483595 kcal Electronic energy + Delta-G solvation = -27195.276886 eV Core-core repulsion = 23149.371408 eV Total energy + Delta-G solvation = -4045.905478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.61352 -40.60300 -39.84320 -37.38983 -37.08561 -36.09029 -34.40898 -33.26026 -32.49966 -31.83344 -30.30826 -29.11214 -27.08634 -25.96490 -24.82337 -23.63511 -23.18345 -22.84708 -21.68840 -21.55515 -19.69631 -18.98999 -18.18846 -17.64859 -17.23073 -16.96654 -16.80614 -16.59389 -16.45673 -16.30712 -15.95430 -15.82085 -15.64644 -15.40382 -15.00271 -14.79419 -14.54531 -14.27225 -14.15901 -14.00828 -13.68610 -13.65092 -13.24698 -13.10648 -12.95235 -12.66496 -12.59930 -12.37368 -12.06077 -11.97079 -11.90318 -11.79746 -11.78711 -11.66639 -10.98864 -10.97951 -10.35091 -10.21524 -9.81091 -9.55897 -9.32789 -8.04130 -5.39105 0.24415 0.51720 1.37796 1.38130 1.42714 1.50243 1.74634 2.48227 2.61767 2.74769 2.97717 3.27059 3.40643 3.52676 3.61394 3.71730 3.81987 3.88264 3.93997 4.10980 4.15628 4.17630 4.21406 4.23037 4.40006 4.45892 4.48933 4.52126 4.56921 4.68263 4.73841 4.76982 4.78713 4.78930 5.07041 5.10555 5.22597 5.24716 5.24763 5.47963 5.62351 5.73315 5.78160 5.82236 5.85740 6.07785 6.19384 6.40135 7.06154 7.06166 7.80891 8.01932 9.17315 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030089 B = 0.001618 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.362519 B =17299.247270 C =17804.019376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.248 1.248 7 C -0.243 4.243 8 H 0.052 0.948 9 N -0.759 5.759 10 C 0.162 3.838 11 C -0.083 4.083 12 C -0.072 4.072 13 C -0.125 4.125 14 C -0.095 4.095 15 C -0.115 4.115 16 C 0.170 3.830 17 N -0.705 5.705 18 C 0.522 3.478 19 O -0.566 6.566 20 C 0.040 3.960 21 H 0.116 0.884 22 C 0.040 3.960 23 O -0.385 6.385 24 C 0.017 3.983 25 C 0.019 3.981 26 O -0.385 6.385 27 C -0.097 4.097 28 C -0.125 4.125 29 H 0.259 0.741 30 H 0.368 0.632 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.417 0.583 40 H 0.060 0.940 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.126 0.874 46 H 0.139 0.861 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.658 -14.818 -0.902 38.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.172 1.172 7 C -0.374 4.374 8 H 0.070 0.930 9 N -0.405 5.405 10 C 0.036 3.964 11 C -0.121 4.121 12 C -0.072 4.072 13 C -0.143 4.143 14 C -0.114 4.114 15 C -0.116 4.116 16 C 0.047 3.953 17 N -0.359 5.359 18 C 0.308 3.692 19 O -0.443 6.443 20 C -0.021 4.021 21 H 0.133 0.867 22 C -0.037 4.037 23 O -0.304 6.304 24 C -0.059 4.059 25 C -0.057 4.057 26 O -0.304 6.304 27 C -0.115 4.115 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.202 0.798 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.254 0.746 40 H 0.078 0.922 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.144 0.856 46 H 0.156 0.844 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 35.172 -15.767 -0.901 38.555 hybrid contribution -0.365 1.244 0.068 1.298 sum 34.808 -14.523 -0.833 37.725 Atomic orbital electron populations 1.69902 1.07293 1.26862 1.59360 1.25597 0.96210 1.01590 1.02228 0.85326 0.78712 0.78964 0.78275 1.20173 1.22159 1.17197 1.19038 0.82834 0.93493 1.41986 0.92997 1.42706 1.02483 1.04241 1.91071 1.20700 0.90456 0.87248 0.97977 1.20707 0.92642 0.94982 1.03747 1.19897 0.97134 0.96122 0.94077 1.21244 0.98896 0.96268 0.97847 1.21219 0.97233 0.94698 0.98222 1.19733 1.01646 0.96567 0.93633 1.20106 0.78365 0.93661 1.03145 1.45886 1.05798 1.09646 1.74524 1.20327 0.88052 0.84952 0.75910 1.90737 1.80464 1.23125 1.50022 1.22649 0.89466 0.88464 1.01568 0.86662 1.23196 0.82657 1.03186 0.94664 1.88141 1.17227 1.30872 1.94173 1.23527 0.99058 0.86078 0.97281 1.23584 0.79797 1.04149 0.98174 1.88193 1.19273 1.28349 1.94563 1.21210 0.97314 0.94744 0.98237 1.21235 0.98986 0.96233 0.97873 0.93241 0.79822 0.96109 0.96254 0.90210 0.90042 0.85230 0.84153 0.90603 0.90813 0.74576 0.92188 0.84715 0.84906 0.92015 0.90679 0.85623 0.84363 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.50 13.97 21.65 0.30 -63.19 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.96 44.91 27.74 68.60 1.90 46.81 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.25 -10.26 6.52 99.48 0.65 -9.61 16 7 C -0.24 -14.09 10.47 84.03 0.88 -13.21 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 N -0.76 -35.50 5.41 -343.45 -1.86 -37.36 16 10 C 0.16 6.12 6.24 86.38 0.54 6.66 16 11 C -0.08 -2.26 5.46 29.84 0.16 -2.10 16 12 C -0.07 -1.64 5.13 -19.87 -0.10 -1.74 16 13 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 14 C -0.10 -1.56 9.70 22.27 0.22 -1.34 16 15 C -0.12 -1.79 5.25 -19.86 -0.10 -1.89 16 16 C 0.17 2.50 5.80 85.63 0.50 2.99 16 17 N -0.70 -8.53 5.52 -466.79 -2.57 -11.11 16 18 C 0.52 9.24 7.18 87.65 0.63 9.87 16 19 O -0.57 -15.78 16.51 15.90 0.26 -15.52 16 20 C 0.04 0.53 3.25 29.89 0.10 0.62 16 21 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 22 C 0.04 0.42 6.30 72.03 0.45 0.87 16 23 O -0.39 -4.65 10.85 -136.01 -1.48 -6.13 16 24 C 0.02 0.14 7.06 72.03 0.51 0.65 16 25 C 0.02 0.18 7.05 72.03 0.51 0.68 16 26 O -0.38 -6.83 10.03 -122.90 -1.23 -8.06 16 27 C -0.10 -1.62 9.70 22.27 0.22 -1.40 16 28 C -0.13 -2.56 9.70 22.27 0.22 -2.35 16 29 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.37 16.01 5.53 -92.71 -0.51 15.50 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 34 H 0.08 2.07 8.08 -2.39 -0.02 2.06 16 35 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 38 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 39 H 0.42 2.83 8.40 -92.70 -0.78 2.05 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.14 0.68 8.08 -2.39 -0.02 0.66 16 42 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 47 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -80.09 392.33 0.36 -79.74 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.37 Total: 22.19 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 5.40 Total: -7.36 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.13 Total: -111.66 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -2.45 Total: -29.71 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Total: -80.09 0.36 -79.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567181789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.748 kcal (2) G-P(sol) polarization free energy of solvation -80.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds