Wall clock time and date at job start Tue Mar 31 2020 21:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99802 * 2 1 4 4 H 1.48505 * 109.46527 * 239.99980 * 3 2 1 5 5 H 1.48492 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47091 * 120.00264 * 3 2 1 7 7 C 1.38806 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00174 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47451 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46881 * 59.99820 * 11 10 9 13 13 O 1.42904 * 109.47100 * 300.00737 * 11 10 9 14 14 C 1.52997 * 109.47504 * 180.02562 * 11 10 9 15 15 N 1.46505 * 109.47212 * 184.99959 * 14 11 10 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47212 * 180.02562 * 18 16 15 20 20 H 1.09007 * 109.33752 * 305.32198 * 19 18 16 21 21 O 1.42730 * 109.34173 * 64.99830 * 19 18 16 22 22 C 1.43217 * 113.12049 * 172.00987 * 21 19 18 23 23 C 1.52969 * 108.48157 * 289.29048 * 22 21 19 24 24 C 1.50743 * 109.76446 * 49.16118 * 23 22 21 25 25 C 1.38600 * 118.76462 * 163.19611 * 24 23 22 26 26 C 1.38063 * 120.28120 * 179.79678 * 25 24 23 27 27 C 1.38267 * 119.86303 * 359.97438 * 26 25 24 28 28 C 1.38061 * 119.89209 * 0.10283 * 27 26 25 29 29 C 1.37899 * 121.35576 * 343.13850 * 24 23 22 30 30 H 0.97006 * 120.00136 * 359.97438 * 1 2 3 31 31 H 0.97008 * 119.99452 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47225 * 59.99956 * 10 9 7 33 33 H 1.09002 * 109.47369 * 300.00149 * 10 9 7 34 34 H 0.96708 * 113.99258 * 299.99573 * 13 11 10 35 35 H 1.09002 * 109.47153 * 64.99951 * 14 11 10 36 36 H 1.09001 * 109.46832 * 305.00142 * 14 11 10 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 11 38 38 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 39 39 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 40 40 H 1.09003 * 109.63253 * 48.99154 * 22 21 19 41 41 H 1.08998 * 109.63206 * 169.38694 * 22 21 19 42 42 H 1.08999 * 109.41970 * 169.25144 * 23 22 21 43 43 H 1.08999 * 109.41880 * 289.12830 * 23 22 21 44 44 H 1.08000 * 119.85813 * 359.79337 * 25 24 23 45 45 H 1.08000 * 120.06912 * 180.02562 * 26 25 24 46 46 H 1.07995 * 120.05111 * 180.11362 * 27 26 25 47 47 H 1.07994 * 119.84585 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4368 -4.7621 -0.8886 13 8 0.2426 -4.7437 1.1682 14 6 1.8288 -6.1447 0.0018 15 7 0.8813 -7.2557 -0.1179 16 6 1.3314 -8.5258 -0.1393 17 8 2.5208 -8.7492 -0.0589 18 6 0.3567 -9.6686 -0.2619 19 6 1.1217 -10.9936 -0.2614 20 1 1.8782 -10.9740 -1.0459 21 8 1.7576 -11.1719 1.0040 22 6 2.3464 -12.4681 1.1599 23 6 1.2232 -13.4975 1.2968 24 6 0.2104 -13.2961 0.1987 25 6 -0.6859 -14.3166 -0.0774 26 6 -1.6294 -14.1639 -1.0737 27 6 -1.6809 -12.9877 -1.7987 28 6 -0.7874 -11.9713 -1.5254 29 6 0.1618 -12.1242 -0.5265 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.7351 -4.7888 1.9993 35 1 2.3866 -6.2418 0.9332 36 1 2.5209 -6.1650 -0.8400 37 1 -0.0699 -7.0770 -0.1826 38 1 -0.3348 -9.6484 0.5805 39 1 -0.2018 -9.5715 -1.1929 40 1 2.9533 -12.7023 0.2852 41 1 2.9708 -12.4817 2.0531 42 1 1.6412 -14.5016 1.2247 43 1 0.7365 -13.3762 2.2645 44 1 -0.6460 -15.2352 0.4892 45 1 -2.3264 -14.9612 -1.2857 46 1 -2.4189 -12.8643 -2.5775 47 1 -0.8280 -11.0531 -2.0924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568587389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:09 Heat of formation + Delta-G solvation = -100.352470 kcal Electronic energy + Delta-G solvation = -27823.225492 eV Core-core repulsion = 23777.846059 eV Total energy + Delta-G solvation = -4045.379433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89343 -39.56029 -37.87649 -37.46983 -34.35203 -34.08596 -33.94728 -32.58003 -31.31606 -30.47270 -29.43612 -28.38436 -25.57994 -24.43534 -24.07447 -22.71321 -21.99795 -21.39336 -20.40831 -20.15922 -17.84735 -17.24176 -17.08703 -16.82050 -16.23657 -16.12542 -15.92123 -15.68743 -15.10580 -14.86098 -14.59240 -14.46450 -14.31402 -13.95648 -13.73247 -13.53535 -13.43072 -13.02334 -12.94138 -12.78020 -12.56455 -12.39984 -12.25975 -12.09087 -11.83281 -11.67182 -11.30464 -10.95339 -10.93625 -10.80144 -10.59952 -10.19935 -10.01322 -9.86829 -9.78233 -9.46458 -9.16061 -9.04372 -8.98262 -8.89197 -6.93413 -5.75585 -3.05299 0.90914 0.96411 2.65415 3.09869 3.31778 3.44658 3.48819 3.50004 3.50188 4.22002 4.23557 4.39435 4.49860 4.55337 4.69123 4.71544 4.72952 4.79896 4.87524 4.90907 4.99005 5.01006 5.13488 5.17527 5.25353 5.29595 5.42477 5.50721 5.56314 5.58606 5.59363 5.63822 5.69017 5.83990 5.98198 6.03519 6.11251 6.17534 6.21267 6.44357 6.52265 6.57731 6.69001 6.89416 7.50785 7.68496 7.96472 8.24512 8.42667 9.54194 10.11000 10.46954 11.46636 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.001761 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.804557 B =15900.377963 C =16492.840338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.126 3.874 11 C 0.089 3.911 12 H 0.103 0.897 13 O -0.552 6.552 14 C 0.091 3.909 15 N -0.724 5.724 16 C 0.513 3.487 17 O -0.532 6.532 18 C -0.134 4.134 19 C 0.149 3.851 20 H 0.080 0.920 21 O -0.356 6.356 22 C 0.060 3.940 23 C -0.117 4.117 24 C -0.070 4.070 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.111 4.111 29 C -0.114 4.114 30 H 0.256 0.744 31 H 0.389 0.611 32 H 0.023 0.977 33 H 0.028 0.972 34 H 0.374 0.626 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.404 0.596 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -32.756 -1.082 32.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.121 0.879 13 O -0.357 6.357 14 C -0.034 4.034 15 N -0.376 5.376 16 C 0.299 3.701 17 O -0.408 6.408 18 C -0.174 4.174 19 C 0.091 3.909 20 H 0.097 0.903 21 O -0.274 6.274 22 C -0.017 4.017 23 C -0.154 4.154 24 C -0.070 4.070 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.139 4.139 28 C -0.129 4.129 29 C -0.114 4.114 30 H 0.066 0.934 31 H 0.224 0.776 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.221 0.779 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.239 0.761 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.948 -32.580 -1.322 32.665 hybrid contribution 0.053 0.713 0.121 0.725 sum -1.895 -31.867 -1.201 31.946 Atomic orbital electron populations 1.69670 1.05098 1.25780 1.57284 1.24761 0.95539 0.97723 1.02845 0.86248 0.78499 0.83453 0.77849 1.21258 1.21653 1.21247 1.19180 0.90976 0.84130 1.43265 0.91267 1.42223 1.06109 0.99348 1.89362 1.21197 0.93546 0.86645 0.98860 1.22380 0.93239 0.91820 0.89618 0.87872 1.86571 1.37014 1.96422 1.15723 1.22083 0.92376 0.85988 1.02913 1.45932 1.11140 1.05519 1.75037 1.20397 0.89585 0.83731 0.76428 1.90721 1.16865 1.84479 1.48760 1.21802 0.98496 0.91652 1.05428 1.20502 0.92188 0.90536 0.87719 0.90264 1.88173 1.72859 1.32260 1.34128 1.22584 0.94014 0.82693 1.02382 1.21179 0.96029 1.00540 0.97685 1.19523 0.97248 0.93435 0.96822 1.21081 0.95663 0.98639 0.98344 1.21140 0.98524 0.97778 0.96090 1.21127 0.99187 0.93668 0.99965 1.21105 0.95036 0.99384 0.97334 1.20240 0.98120 0.95821 0.97265 0.93434 0.77650 0.95950 0.95410 0.77904 0.91124 0.90567 0.76147 0.87732 0.87314 0.92663 0.88200 0.89744 0.89579 0.85986 0.85956 0.85778 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.42 5.49 -59.91 -0.33 -18.75 16 10 C 0.13 2.46 5.92 -4.05 -0.02 2.43 16 11 C 0.09 1.37 3.09 -26.73 -0.08 1.29 16 12 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 13 O -0.55 -8.82 13.03 -35.23 -0.46 -9.28 16 14 C 0.09 1.21 5.31 -4.04 -0.02 1.18 16 15 N -0.72 -8.38 5.50 -60.29 -0.33 -8.71 16 16 C 0.51 6.40 7.71 -10.99 -0.08 6.32 16 17 O -0.53 -8.71 15.41 -9.00 -0.14 -8.84 16 18 C -0.13 -1.22 5.11 -27.88 -0.14 -1.36 16 19 C 0.15 1.52 2.28 -27.90 -0.06 1.45 16 20 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 21 O -0.36 -4.21 9.66 -49.79 -0.48 -4.69 16 22 C 0.06 0.51 6.85 37.14 0.25 0.77 16 23 C -0.12 -0.83 6.00 -27.88 -0.17 -1.00 16 24 C -0.07 -0.59 5.78 -104.59 -0.60 -1.20 16 25 C -0.12 -0.87 9.67 -39.51 -0.38 -1.25 16 26 C -0.12 -0.80 10.05 -39.63 -0.40 -1.19 16 27 C -0.12 -0.84 10.05 -39.64 -0.40 -1.24 16 28 C -0.11 -0.85 9.08 -39.50 -0.36 -1.21 16 29 C -0.11 -1.03 5.46 -104.62 -0.57 -1.60 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.39 10.56 7.54 -40.82 -0.31 10.25 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.37 5.08 9.05 45.56 0.41 5.49 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.40 3.95 8.47 -40.82 -0.35 3.61 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 0.69 6.30 -51.93 -0.33 0.36 16 40 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 45 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 47 H 0.13 0.74 6.45 -52.49 -0.34 0.40 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -35.56 388.28 -9.84 -45.39 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -6.36 Total: 13.32 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -3.29 Total: -4.11 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.06 Total: -55.15 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.08 Total: -22.81 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.56 -9.84 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568587389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.959 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds