Wall clock time and date at job start Tue Mar 31 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99802 * 2 1 4 4 H 1.48505 * 109.46527 * 239.99980 * 3 2 1 5 5 H 1.48492 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47091 * 120.00264 * 3 2 1 7 7 C 1.38806 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00174 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47451 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46881 * 59.99820 * 11 10 9 13 13 O 1.42904 * 109.47100 * 300.00737 * 11 10 9 14 14 C 1.52997 * 109.47504 * 180.02562 * 11 10 9 15 15 N 1.46505 * 109.47212 * 184.99959 * 14 11 10 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47212 * 180.02562 * 18 16 15 20 20 H 1.09007 * 109.33752 * 305.32198 * 19 18 16 21 21 O 1.42730 * 109.34173 * 64.99830 * 19 18 16 22 22 C 1.43217 * 113.12049 * 172.00987 * 21 19 18 23 23 C 1.52969 * 108.48157 * 289.29048 * 22 21 19 24 24 C 1.50743 * 109.76446 * 49.16118 * 23 22 21 25 25 C 1.38600 * 118.76462 * 163.19611 * 24 23 22 26 26 C 1.38063 * 120.28120 * 179.79678 * 25 24 23 27 27 C 1.38267 * 119.86303 * 359.97438 * 26 25 24 28 28 C 1.38061 * 119.89209 * 0.10283 * 27 26 25 29 29 C 1.37899 * 121.35576 * 343.13850 * 24 23 22 30 30 H 0.97006 * 120.00136 * 359.97438 * 1 2 3 31 31 H 0.97008 * 119.99452 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47225 * 59.99956 * 10 9 7 33 33 H 1.09002 * 109.47369 * 300.00149 * 10 9 7 34 34 H 0.96708 * 113.99258 * 299.99573 * 13 11 10 35 35 H 1.09002 * 109.47153 * 64.99951 * 14 11 10 36 36 H 1.09001 * 109.46832 * 305.00142 * 14 11 10 37 37 H 0.96996 * 119.99606 * 0.02562 * 15 14 11 38 38 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 39 39 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 40 40 H 1.09003 * 109.63253 * 48.99154 * 22 21 19 41 41 H 1.08998 * 109.63206 * 169.38694 * 22 21 19 42 42 H 1.08999 * 109.41970 * 169.25144 * 23 22 21 43 43 H 1.08999 * 109.41880 * 289.12830 * 23 22 21 44 44 H 1.08000 * 119.85813 * 359.79337 * 25 24 23 45 45 H 1.08000 * 120.06912 * 180.02562 * 26 25 24 46 46 H 1.07995 * 120.05111 * 180.11362 * 27 26 25 47 47 H 1.07994 * 119.84585 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4368 -4.7621 -0.8886 13 8 0.2426 -4.7437 1.1682 14 6 1.8288 -6.1447 0.0018 15 7 0.8813 -7.2557 -0.1179 16 6 1.3314 -8.5258 -0.1393 17 8 2.5208 -8.7492 -0.0589 18 6 0.3567 -9.6686 -0.2619 19 6 1.1217 -10.9936 -0.2614 20 1 1.8782 -10.9740 -1.0459 21 8 1.7576 -11.1719 1.0040 22 6 2.3464 -12.4681 1.1599 23 6 1.2232 -13.4975 1.2968 24 6 0.2104 -13.2961 0.1987 25 6 -0.6859 -14.3166 -0.0774 26 6 -1.6294 -14.1639 -1.0737 27 6 -1.6809 -12.9877 -1.7987 28 6 -0.7874 -11.9713 -1.5254 29 6 0.1618 -12.1242 -0.5265 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.7351 -4.7888 1.9993 35 1 2.3866 -6.2418 0.9332 36 1 2.5209 -6.1650 -0.8400 37 1 -0.0699 -7.0770 -0.1826 38 1 -0.3348 -9.6484 0.5805 39 1 -0.2018 -9.5715 -1.1929 40 1 2.9533 -12.7023 0.2852 41 1 2.9708 -12.4817 2.0531 42 1 1.6412 -14.5016 1.2247 43 1 0.7365 -13.3762 2.2645 44 1 -0.6460 -15.2352 0.4892 45 1 -2.3264 -14.9612 -1.2857 46 1 -2.4189 -12.8643 -2.5775 47 1 -0.8280 -11.0531 -2.0924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568587389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:08 Heat of formation + Delta-G solvation = -126.760204 kcal Electronic energy + Delta-G solvation = -27824.370617 eV Core-core repulsion = 23777.846059 eV Total energy + Delta-G solvation = -4046.524558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -41.57667 -40.52243 -38.95221 -38.36753 -36.05963 -35.24129 -34.75264 -33.24777 -33.13963 -31.27417 -30.50076 -29.33975 -27.06357 -25.37032 -24.74601 -24.19916 -22.80292 -22.71579 -21.17491 -20.99171 -19.24941 -18.57448 -18.07688 -17.72849 -17.20319 -17.08727 -16.88643 -16.45687 -16.36444 -16.03959 -15.79424 -15.45428 -15.27248 -15.03704 -14.84440 -14.60019 -14.29960 -14.23022 -14.06056 -13.89100 -13.46492 -13.42011 -13.16208 -12.98983 -12.93934 -12.71940 -12.63536 -12.37434 -12.20226 -11.97183 -11.87114 -11.80054 -11.54779 -11.15546 -10.96989 -10.78947 -10.55904 -10.08779 -9.70519 -9.54472 -9.01014 -7.94597 -5.24234 0.35755 0.44257 1.47702 1.50845 1.57080 1.67959 2.13541 2.56559 2.72605 2.86475 3.36126 3.45415 3.56038 3.63019 3.65742 3.81671 3.90067 3.99011 4.06189 4.14112 4.21117 4.23601 4.29577 4.30968 4.43277 4.43736 4.60254 4.62342 4.63428 4.68010 4.75684 4.82919 4.89215 4.93417 4.97474 5.08478 5.17020 5.21879 5.41719 5.48178 5.51257 5.60724 5.62824 6.07601 6.19403 6.26345 6.56805 6.79239 7.28193 7.33618 8.08982 8.32603 9.28261 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.001761 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.804557 B =15900.377963 C =16492.840338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.121 3.879 11 C 0.109 3.891 12 H 0.104 0.896 13 O -0.563 6.563 14 C 0.103 3.897 15 N -0.715 5.715 16 C 0.512 3.488 17 O -0.575 6.575 18 C -0.126 4.126 19 C 0.149 3.851 20 H 0.062 0.938 21 O -0.385 6.385 22 C 0.053 3.947 23 C -0.111 4.111 24 C -0.088 4.088 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.118 4.118 29 C -0.131 4.131 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.028 0.972 33 H 0.033 0.967 34 H 0.384 0.616 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 -34.132 -1.372 34.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.382 5.382 10 C -0.006 4.006 11 C 0.049 3.951 12 H 0.121 0.879 13 O -0.369 6.369 14 C -0.022 4.022 15 N -0.368 5.368 16 C 0.299 3.701 17 O -0.454 6.454 18 C -0.165 4.165 19 C 0.091 3.909 20 H 0.080 0.920 21 O -0.304 6.304 22 C -0.023 4.023 23 C -0.148 4.148 24 C -0.088 4.088 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.136 4.136 29 C -0.131 4.131 30 H 0.060 0.940 31 H 0.210 0.790 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.158 0.842 45 H 0.162 0.838 46 H 0.162 0.838 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.393 -33.990 -1.608 34.112 hybrid contribution 0.225 1.041 0.214 1.087 sum -2.169 -32.949 -1.394 33.050 Atomic orbital electron populations 1.69829 1.06617 1.26181 1.59104 1.25603 0.96428 1.01199 1.03530 0.85187 0.77173 0.79032 0.78194 1.20343 1.22086 1.20404 1.19612 0.91509 0.85393 1.41751 0.90653 1.42393 1.05772 1.00671 1.89372 1.21404 0.94301 0.85880 0.99030 1.22097 0.92215 0.91185 0.89594 0.87854 1.86551 1.37567 1.96404 1.16390 1.21802 0.92222 0.85428 1.02712 1.45832 1.11464 1.04959 1.74497 1.20966 0.89532 0.84359 0.75210 1.90704 1.18864 1.85064 1.50755 1.21845 0.97666 0.89666 1.07322 1.20470 0.92141 0.91584 0.86710 0.92027 1.88118 1.73366 1.33969 1.34947 1.22761 0.94719 0.82175 1.02685 1.21151 0.95300 1.00964 0.97411 1.19779 0.98001 0.93752 0.97301 1.21339 0.95419 0.98992 0.98690 1.21487 0.98532 0.98336 0.95552 1.21439 0.99307 0.93484 1.00363 1.21327 0.94820 1.00370 0.97090 1.20222 0.98663 0.95761 0.98471 0.93967 0.79026 0.95373 0.94898 0.76716 0.91470 0.90747 0.74838 0.86793 0.84315 0.92946 0.87312 0.87746 0.89482 0.84216 0.83836 0.83804 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.98 46.31 29.55 68.60 2.03 48.33 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -37.46 5.49 -343.46 -1.89 -39.35 16 10 C 0.12 4.64 5.92 86.38 0.51 5.15 16 11 C 0.11 3.24 3.09 30.59 0.09 3.33 16 12 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 13 O -0.56 -17.41 13.03 -148.98 -1.94 -19.35 16 14 C 0.10 2.64 5.31 86.38 0.46 3.10 16 15 N -0.71 -15.67 5.50 -463.06 -2.55 -18.22 16 16 C 0.51 12.44 7.71 87.66 0.68 13.12 16 17 O -0.57 -18.98 15.41 10.89 0.17 -18.81 16 18 C -0.13 -2.15 5.11 29.85 0.15 -2.00 16 19 C 0.15 3.02 2.28 29.83 0.07 3.09 16 20 H 0.06 1.41 7.94 -2.38 -0.02 1.39 16 21 O -0.38 -9.24 9.66 -135.06 -1.30 -10.54 16 22 C 0.05 0.91 6.85 71.97 0.49 1.40 16 23 C -0.11 -1.48 6.00 29.85 0.18 -1.30 16 24 C -0.09 -1.40 5.78 -19.84 -0.11 -1.52 16 25 C -0.13 -1.61 9.67 22.31 0.22 -1.39 16 26 C -0.12 -1.37 10.05 22.24 0.22 -1.14 16 27 C -0.13 -1.50 10.05 22.23 0.22 -1.27 16 28 C -0.12 -1.62 9.08 22.32 0.20 -1.42 16 29 C -0.13 -2.24 5.46 -19.86 -0.11 -2.35 16 30 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 31 H 0.38 20.66 7.54 -92.70 -0.70 19.96 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.38 10.05 9.05 -74.05 -0.67 9.38 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.41 7.38 8.47 -92.71 -0.79 6.59 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.14 1.47 6.30 -2.39 -0.02 1.45 16 40 H 0.05 0.89 8.07 -2.39 -0.02 0.87 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 46 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.14 1.36 6.45 -2.91 -0.02 1.34 16 Total: -1.00 -76.48 388.28 -1.77 -78.25 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -1.14 Total: 39.42 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.58 Total: -0.33 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -4.15 Total: -116.97 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -3.08 Total: -48.70 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -76.48 -1.77 -78.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568587389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.513 kcal (2) G-P(sol) polarization free energy of solvation -76.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds