Wall clock time and date at job start Tue Mar 31 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 O 1.42902 * 109.47328 * 64.99617 * 11 10 9 14 14 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 15 15 N 1.46491 * 109.47329 * 179.97438 * 14 11 10 16 16 C 1.34778 * 119.99666 * 180.02562 * 15 14 11 17 17 O 1.21277 * 120.00405 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99828 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.46982 * 179.97438 * 18 16 15 20 20 H 1.08993 * 109.33985 * 55.00062 * 19 18 16 21 21 O 1.42730 * 109.34031 * 295.31653 * 19 18 16 22 22 C 1.43212 * 113.11876 * 187.98958 * 21 19 18 23 23 C 1.52971 * 108.47732 * 70.71523 * 22 21 19 24 24 C 1.50737 * 109.76633 * 310.83775 * 23 22 21 25 25 C 1.38604 * 118.76208 * 196.80841 * 24 23 22 26 26 C 1.37412 * 120.43163 * 180.59315 * 25 24 23 27 27 C 1.38259 * 119.80872 * 359.60633 * 26 25 24 28 28 C 1.38058 * 119.89363 * 0.18258 * 27 26 25 29 29 C 1.37672 * 121.29809 * 16.99689 * 24 23 22 30 30 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 0.96696 * 113.99765 * 60.00422 * 13 11 10 35 35 H 1.09000 * 109.46800 * 300.00452 * 14 11 10 36 36 H 1.09002 * 109.46892 * 59.99206 * 14 11 10 37 37 H 0.97004 * 120.00228 * 359.97438 * 15 14 11 38 38 H 1.09003 * 109.46636 * 299.99585 * 18 16 15 39 39 H 1.08997 * 109.47006 * 59.99647 * 18 16 15 40 40 H 1.09001 * 109.63352 * 190.40931 * 22 21 19 41 41 H 1.08999 * 109.63728 * 311.01999 * 22 21 19 42 42 H 1.09001 * 109.42251 * 70.92964 * 23 22 21 43 43 H 1.09002 * 109.42318 * 190.74552 * 23 22 21 44 44 H 1.07993 * 119.86158 * 0.19853 * 25 24 23 45 45 H 1.07994 * 120.11764 * 179.86171 * 26 25 24 46 46 H 1.07995 * 120.04966 * 180.15559 * 27 26 25 47 47 H 1.08003 * 119.84221 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.6163 -2.1913 -0.0115 12 1 5.8627 -1.5427 -0.8524 13 8 5.9852 -1.5481 1.2101 14 6 6.3799 -3.5105 -0.1442 15 7 7.8201 -3.2427 -0.1494 16 6 8.6947 -4.2624 -0.2583 17 8 8.2894 -5.4016 -0.3514 18 6 10.1764 -3.9870 -0.2631 19 6 10.9398 -5.3062 -0.3959 20 1 10.5923 -5.8367 -1.2823 21 8 10.7008 -6.1091 0.7597 22 6 11.5180 -7.2842 0.8068 23 6 12.9603 -6.8607 1.0903 24 6 13.3575 -5.7466 0.1557 25 6 14.7036 -5.4569 -0.0025 26 6 15.1035 -4.4405 -0.8363 27 6 14.1577 -3.7070 -1.5284 28 6 12.8163 -3.9960 -1.3762 29 6 12.4125 -5.0188 -0.5318 30 1 -0.4851 0.8401 0.0004 31 1 3.8646 -0.3620 0.0004 32 1 3.8521 -3.0451 0.8825 33 1 3.8454 -3.0397 -0.8974 34 1 5.7944 -2.0691 2.0020 35 1 6.1335 -4.1590 0.6965 36 1 6.0984 -4.0010 -1.0760 37 1 8.1443 -2.3314 -0.0753 38 1 10.4225 -3.3381 -1.1036 39 1 10.4578 -3.4969 0.6690 40 1 11.1668 -7.9429 1.6011 41 1 11.4699 -7.8024 -0.1509 42 1 13.0407 -6.5152 2.1209 43 1 13.6241 -7.7124 0.9416 44 1 15.4438 -6.0288 0.5373 45 1 16.1536 -4.2177 -0.9542 46 1 14.4677 -2.9090 -2.1867 47 1 12.0781 -3.4223 -1.9169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568587390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:30 Heat of formation + Delta-G solvation = -96.351895 kcal Electronic energy + Delta-G solvation = -27910.040383 eV Core-core repulsion = 23864.834429 eV Total energy + Delta-G solvation = -4045.205955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 13.34 seconds Orbital eigenvalues (eV) -40.95671 -39.63912 -37.97703 -37.59238 -34.48040 -34.14161 -34.08117 -32.62971 -31.50505 -30.58081 -29.64980 -28.58915 -25.79010 -24.48106 -24.10507 -22.52937 -21.91830 -21.50027 -20.44424 -20.25470 -17.92490 -17.70106 -17.23233 -16.86282 -16.27329 -16.17741 -16.03141 -15.73336 -15.18758 -14.91921 -14.66150 -14.55985 -14.30450 -13.99797 -13.79339 -13.56115 -13.51395 -13.24288 -13.00295 -12.83845 -12.58944 -12.43391 -12.35417 -12.15272 -11.95347 -11.73273 -11.34288 -11.30253 -10.96857 -10.87282 -10.80032 -10.17717 -10.07402 -9.90925 -9.71036 -9.54950 -9.20975 -9.11349 -9.02388 -8.92881 -7.26108 -5.77857 -3.14109 0.88163 0.93137 2.59555 3.02705 3.28311 3.39042 3.44840 3.46445 3.46647 4.17487 4.20187 4.36225 4.46034 4.54271 4.59745 4.65166 4.68731 4.70445 4.78245 4.84490 4.93588 4.96817 5.10073 5.13874 5.14903 5.23134 5.38773 5.47237 5.48046 5.51499 5.54971 5.56104 5.65599 5.72652 5.78429 5.88641 6.00444 6.08300 6.14329 6.35739 6.42695 6.54506 6.55664 6.85793 7.43674 7.78272 7.98005 8.18284 8.40540 9.20017 9.91973 10.11599 11.40150 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.001891 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.913784 B =14802.633552 C =15552.919259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.104 0.896 13 O -0.557 6.557 14 C 0.091 3.909 15 N -0.725 5.725 16 C 0.513 3.487 17 O -0.530 6.530 18 C -0.134 4.134 19 C 0.149 3.851 20 H 0.080 0.920 21 O -0.356 6.356 22 C 0.060 3.940 23 C -0.118 4.118 24 C -0.070 4.070 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.111 4.111 29 C -0.114 4.114 30 H 0.260 0.740 31 H 0.365 0.635 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.376 0.624 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.404 0.596 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.296 -11.875 -0.815 36.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.003 3.997 11 C 0.025 3.975 12 H 0.122 0.878 13 O -0.362 6.362 14 C -0.034 4.034 15 N -0.377 5.377 16 C 0.299 3.701 17 O -0.406 6.406 18 C -0.173 4.173 19 C 0.091 3.909 20 H 0.098 0.902 21 O -0.274 6.274 22 C -0.017 4.017 23 C -0.155 4.155 24 C -0.070 4.070 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.140 4.140 28 C -0.129 4.129 29 C -0.115 4.115 30 H 0.070 0.930 31 H 0.199 0.801 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.224 0.776 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.238 0.762 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 33.788 -12.274 -1.139 35.966 hybrid contribution 0.770 1.203 0.173 1.439 sum 34.558 -11.071 -0.967 36.301 Atomic orbital electron populations 1.69705 1.05139 1.25909 1.57312 1.24675 0.95253 0.97322 1.01811 0.86534 0.79490 0.84743 0.77797 1.21120 1.21737 1.19859 1.19050 0.80530 0.94783 1.43420 0.89252 1.42572 1.03944 1.01976 1.91074 1.21181 0.88568 0.90257 0.99732 1.22451 0.94504 0.92411 0.88107 0.87840 1.86541 1.85884 1.48158 1.15638 1.22041 0.79770 0.98222 1.03328 1.45907 1.06539 1.10153 1.75149 1.20403 0.88186 0.85163 0.76383 1.90729 1.80008 1.21300 1.48553 1.21799 0.92178 0.97719 1.05648 1.20501 0.88782 0.91360 0.90283 0.90227 1.88170 1.61322 1.35314 1.42633 1.22591 0.89079 0.87809 1.02180 1.21188 0.98189 0.96865 0.99247 1.19467 0.92971 0.97218 0.97319 1.20922 0.95050 0.98370 0.99341 1.20989 0.99657 0.95874 0.96956 1.21129 0.92983 0.99985 0.99883 1.21107 0.96360 0.97092 0.98340 1.20186 0.95907 0.97074 0.98295 0.93021 0.80125 0.95030 0.94459 0.77644 0.90943 0.90375 0.76155 0.87337 0.87754 0.88175 0.92612 0.89581 0.89732 0.86020 0.85949 0.85800 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.29 27.74 -169.99 -4.71 17.58 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.27 -6.56 6.52 56.52 0.37 -6.20 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.72 5.35 -59.91 -0.32 -18.04 16 10 C 0.13 2.40 5.90 -4.04 -0.02 2.38 16 11 C 0.09 1.20 3.09 -26.73 -0.08 1.11 16 12 H 0.10 1.46 8.14 -51.92 -0.42 1.03 16 13 O -0.56 -7.98 13.03 -35.23 -0.46 -8.44 16 14 C 0.09 1.12 5.34 -4.05 -0.02 1.10 16 15 N -0.72 -7.80 5.45 -60.29 -0.33 -8.13 16 16 C 0.51 6.09 7.70 -10.98 -0.08 6.00 16 17 O -0.53 -8.39 15.40 -9.31 -0.14 -8.54 16 18 C -0.13 -1.15 5.10 -27.88 -0.14 -1.29 16 19 C 0.15 1.46 2.28 -27.90 -0.06 1.39 16 20 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 21 O -0.36 -4.08 9.64 -50.10 -0.48 -4.56 16 22 C 0.06 0.50 6.85 37.14 0.25 0.75 16 23 C -0.12 -0.80 6.00 -27.88 -0.17 -0.97 16 24 C -0.07 -0.57 5.77 -104.68 -0.60 -1.17 16 25 C -0.12 -0.83 9.64 -39.75 -0.38 -1.21 16 26 C -0.12 -0.76 10.02 -39.87 -0.40 -1.16 16 27 C -0.12 -0.81 10.05 -39.64 -0.40 -1.21 16 28 C -0.11 -0.81 9.08 -39.50 -0.36 -1.17 16 29 C -0.11 -0.99 5.46 -104.70 -0.57 -1.56 16 30 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 31 H 0.37 8.59 5.53 -40.82 -0.23 8.36 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.38 4.48 9.04 45.56 0.41 4.89 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 3.61 8.35 -40.82 -0.34 3.27 16 38 H 0.11 0.63 6.32 -51.93 -0.33 0.30 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 47 H 0.13 0.69 6.45 -52.48 -0.34 0.35 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -36.39 385.09 -9.49 -45.88 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.32 Total: 11.30 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.30 Total: -4.16 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.13 Total: -54.87 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.09 Total: -21.54 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.39 -9.49 -45.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568587390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.468 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.34 seconds