Wall clock time and date at job start Tue Mar 31 2020 21:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 O 1.42902 * 109.47328 * 64.99617 * 11 10 9 14 14 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 15 15 N 1.46491 * 109.47329 * 179.97438 * 14 11 10 16 16 C 1.34778 * 119.99666 * 180.02562 * 15 14 11 17 17 O 1.21277 * 120.00405 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99828 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.46982 * 179.97438 * 18 16 15 20 20 H 1.08993 * 109.33985 * 55.00062 * 19 18 16 21 21 O 1.42730 * 109.34031 * 295.31653 * 19 18 16 22 22 C 1.43212 * 113.11876 * 187.98958 * 21 19 18 23 23 C 1.52971 * 108.47732 * 70.71523 * 22 21 19 24 24 C 1.50737 * 109.76633 * 310.83775 * 23 22 21 25 25 C 1.38604 * 118.76208 * 196.80841 * 24 23 22 26 26 C 1.37412 * 120.43163 * 180.59315 * 25 24 23 27 27 C 1.38259 * 119.80872 * 359.60633 * 26 25 24 28 28 C 1.38058 * 119.89363 * 0.18258 * 27 26 25 29 29 C 1.37672 * 121.29809 * 16.99689 * 24 23 22 30 30 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 0.96696 * 113.99765 * 60.00422 * 13 11 10 35 35 H 1.09000 * 109.46800 * 300.00452 * 14 11 10 36 36 H 1.09002 * 109.46892 * 59.99206 * 14 11 10 37 37 H 0.97004 * 120.00228 * 359.97438 * 15 14 11 38 38 H 1.09003 * 109.46636 * 299.99585 * 18 16 15 39 39 H 1.08997 * 109.47006 * 59.99647 * 18 16 15 40 40 H 1.09001 * 109.63352 * 190.40931 * 22 21 19 41 41 H 1.08999 * 109.63728 * 311.01999 * 22 21 19 42 42 H 1.09001 * 109.42251 * 70.92964 * 23 22 21 43 43 H 1.09002 * 109.42318 * 190.74552 * 23 22 21 44 44 H 1.07993 * 119.86158 * 0.19853 * 25 24 23 45 45 H 1.07994 * 120.11764 * 179.86171 * 26 25 24 46 46 H 1.07995 * 120.04966 * 180.15559 * 27 26 25 47 47 H 1.08003 * 119.84221 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.6163 -2.1913 -0.0115 12 1 5.8627 -1.5427 -0.8524 13 8 5.9852 -1.5481 1.2101 14 6 6.3799 -3.5105 -0.1442 15 7 7.8201 -3.2427 -0.1494 16 6 8.6947 -4.2624 -0.2583 17 8 8.2894 -5.4016 -0.3514 18 6 10.1764 -3.9870 -0.2631 19 6 10.9398 -5.3062 -0.3959 20 1 10.5923 -5.8367 -1.2823 21 8 10.7008 -6.1091 0.7597 22 6 11.5180 -7.2842 0.8068 23 6 12.9603 -6.8607 1.0903 24 6 13.3575 -5.7466 0.1557 25 6 14.7036 -5.4569 -0.0025 26 6 15.1035 -4.4405 -0.8363 27 6 14.1577 -3.7070 -1.5284 28 6 12.8163 -3.9960 -1.3762 29 6 12.4125 -5.0188 -0.5318 30 1 -0.4851 0.8401 0.0004 31 1 3.8646 -0.3620 0.0004 32 1 3.8521 -3.0451 0.8825 33 1 3.8454 -3.0397 -0.8974 34 1 5.7944 -2.0691 2.0020 35 1 6.1335 -4.1590 0.6965 36 1 6.0984 -4.0010 -1.0760 37 1 8.1443 -2.3314 -0.0753 38 1 10.4225 -3.3381 -1.1036 39 1 10.4578 -3.4969 0.6690 40 1 11.1668 -7.9429 1.6011 41 1 11.4699 -7.8024 -0.1509 42 1 13.0407 -6.5152 2.1209 43 1 13.6241 -7.7124 0.9416 44 1 15.4438 -6.0288 0.5373 45 1 16.1536 -4.2177 -0.9542 46 1 14.4677 -2.9090 -2.1867 47 1 12.0781 -3.4223 -1.9169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568587390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:27 Heat of formation + Delta-G solvation = -124.029687 kcal Electronic energy + Delta-G solvation = -27911.240583 eV Core-core repulsion = 23864.834429 eV Total energy + Delta-G solvation = -4046.406154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.52 seconds Orbital eigenvalues (eV) -41.59845 -40.54264 -39.01418 -38.39715 -36.20318 -35.23403 -34.75675 -33.49632 -33.21069 -31.40186 -30.65549 -29.42626 -27.17414 -25.30216 -24.72886 -23.94145 -22.87915 -22.73231 -21.21634 -20.99477 -19.79068 -18.59694 -18.07344 -17.71247 -17.21406 -17.11188 -16.88144 -16.52650 -16.36540 -16.06218 -15.79321 -15.45292 -15.26622 -15.11275 -14.91743 -14.61958 -14.35331 -14.25055 -14.08873 -14.01859 -13.48404 -13.46695 -13.31990 -13.12085 -12.98482 -12.80265 -12.64298 -12.38119 -12.23569 -11.88209 -11.87114 -11.82624 -11.55210 -11.18282 -11.01844 -10.81883 -10.56261 -10.08647 -9.72436 -9.55090 -9.32357 -8.03879 -5.37941 0.36065 0.44084 1.39998 1.42794 1.51200 1.68433 2.12635 2.48678 2.72587 2.86493 3.25932 3.36726 3.52469 3.56534 3.65329 3.81654 3.89386 3.96269 4.01650 4.10441 4.14050 4.20248 4.25211 4.29853 4.33067 4.43347 4.59657 4.61240 4.63127 4.67909 4.76595 4.82841 4.88964 4.92365 4.97283 5.08412 5.16303 5.18357 5.41709 5.51196 5.60866 5.62741 5.73120 6.07428 6.19018 6.19339 6.57491 6.75457 7.06949 7.29356 7.81989 8.01700 9.17315 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.001891 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.913784 B =14802.633552 C =15552.919259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.239 4.239 8 H 0.056 0.944 9 N -0.752 5.752 10 C 0.123 3.877 11 C 0.107 3.893 12 H 0.112 0.888 13 O -0.563 6.563 14 C 0.101 3.899 15 N -0.714 5.714 16 C 0.511 3.489 17 O -0.575 6.575 18 C -0.125 4.125 19 C 0.149 3.851 20 H 0.062 0.938 21 O -0.385 6.385 22 C 0.053 3.947 23 C -0.112 4.112 24 C -0.088 4.088 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.118 4.118 29 C -0.131 4.131 30 H 0.258 0.742 31 H 0.369 0.631 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.387 0.613 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.416 0.584 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.797 -10.562 -0.952 39.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.175 1.175 7 C -0.370 4.370 8 H 0.074 0.926 9 N -0.398 5.398 10 C -0.004 4.004 11 C 0.047 3.953 12 H 0.130 0.870 13 O -0.370 6.370 14 C -0.024 4.024 15 N -0.367 5.367 16 C 0.299 3.701 17 O -0.454 6.454 18 C -0.164 4.164 19 C 0.090 3.910 20 H 0.080 0.920 21 O -0.304 6.304 22 C -0.023 4.023 23 C -0.149 4.149 24 C -0.088 4.088 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.136 4.136 29 C -0.131 4.131 30 H 0.067 0.933 31 H 0.203 0.797 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.253 0.747 38 H 0.157 0.843 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.157 0.843 45 H 0.161 0.839 46 H 0.162 0.838 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 37.351 -10.969 -1.267 38.949 hybrid contribution -0.317 0.656 0.219 0.761 sum 37.034 -10.313 -1.048 38.457 Atomic orbital electron populations 1.69890 1.07196 1.26795 1.59449 1.25550 0.96166 1.01477 1.02416 0.85350 0.78659 0.79255 0.78177 1.20239 1.22303 1.17529 1.19044 0.82756 0.93506 1.41720 0.92636 1.42540 1.02306 1.04024 1.90936 1.21406 0.91230 0.88132 0.99608 1.22145 0.91398 0.93225 0.88528 0.87037 1.86519 1.85643 1.48699 1.16094 1.21786 0.80682 0.96987 1.02955 1.45783 1.05649 1.10735 1.74499 1.20970 0.89513 0.84467 0.75167 1.90714 1.80891 1.23137 1.50652 1.21841 0.89338 0.97820 1.07432 1.20482 0.89913 0.91403 0.89153 0.92041 1.88116 1.62494 1.36384 1.43388 1.22758 0.89942 0.87241 1.02378 1.21157 0.97332 0.97341 0.99058 1.19717 0.93622 0.97680 0.97782 1.21170 0.94886 0.98786 0.99608 1.21331 1.00860 0.95383 0.96319 1.21443 0.92732 1.00422 1.00000 1.21334 0.97272 0.96870 0.98110 1.20174 0.95126 0.98218 0.99571 0.93280 0.79708 0.94950 0.94418 0.76374 0.91505 0.90781 0.74693 0.84263 0.86725 0.87358 0.92947 0.89481 0.87831 0.84345 0.83882 0.83802 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.44 13.97 21.65 0.30 -63.13 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 45.70 27.74 68.60 1.90 47.60 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 7 C -0.24 -13.75 10.47 84.03 0.88 -12.87 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 N -0.75 -34.65 5.35 -343.46 -1.84 -36.49 16 10 C 0.12 4.39 5.90 86.38 0.51 4.90 16 11 C 0.11 2.77 3.09 30.59 0.09 2.87 16 12 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 13 O -0.56 -14.54 13.03 -148.98 -1.94 -16.48 16 14 C 0.10 2.35 5.34 86.38 0.46 2.81 16 15 N -0.71 -13.94 5.45 -463.06 -2.52 -16.47 16 16 C 0.51 11.58 7.70 87.66 0.68 12.26 16 17 O -0.57 -18.30 15.40 11.19 0.17 -18.12 16 18 C -0.13 -1.94 5.10 29.85 0.15 -1.79 16 19 C 0.15 2.86 2.28 29.84 0.07 2.92 16 20 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 21 O -0.38 -8.90 9.64 -134.77 -1.30 -10.20 16 22 C 0.05 0.88 6.85 71.97 0.49 1.38 16 23 C -0.11 -1.43 6.00 29.85 0.18 -1.25 16 24 C -0.09 -1.34 5.77 -19.90 -0.11 -1.45 16 25 C -0.13 -1.53 9.64 22.16 0.21 -1.31 16 26 C -0.12 -1.28 10.02 22.08 0.22 -1.06 16 27 C -0.13 -1.38 10.05 22.23 0.22 -1.16 16 28 C -0.12 -1.49 9.08 22.32 0.20 -1.29 16 29 C -0.13 -2.12 5.46 -19.91 -0.11 -2.23 16 30 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 31 H 0.37 16.41 5.53 -92.71 -0.51 15.90 16 32 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.39 8.27 9.04 -74.06 -0.67 7.60 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.42 6.20 8.35 -92.71 -0.77 5.43 16 38 H 0.14 1.24 6.32 -2.39 -0.02 1.22 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 0.86 8.07 -2.39 -0.02 0.85 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 45 H 0.14 0.84 8.06 -2.91 -0.02 0.81 16 46 H 0.14 0.90 8.06 -2.91 -0.02 0.87 16 47 H 0.14 1.19 6.45 -2.91 -0.02 1.17 16 Total: -1.00 -79.77 385.09 -1.61 -81.38 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -1.01 Total: 32.55 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 4.62 Total: -0.64 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -4.06 Total: -116.09 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -3.07 Total: -44.81 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -79.77 -1.61 -81.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568587390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.645 kcal (2) G-P(sol) polarization free energy of solvation -79.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.52 seconds