Wall clock time and date at job start Tue Mar 31 2020 21:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48506 * 109.47190 * 270.00282 * 3 2 1 5 5 H 1.48497 * 109.47261 * 30.00021 * 3 2 1 6 6 H 1.48492 * 109.47310 * 150.00375 * 3 2 1 7 7 C 1.38807 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00409 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00220 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46987 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47024 * 180.02562 * 11 10 9 13 13 C 1.46509 * 119.99628 * 269.99903 * 12 11 10 14 14 C 1.52992 * 109.47039 * 274.87309 * 13 12 11 15 15 O 1.42910 * 109.47087 * 65.00041 * 14 13 12 16 16 C 1.34777 * 120.00562 * 89.99448 * 12 11 10 17 17 O 1.21551 * 120.00296 * 185.55065 * 16 12 11 18 18 C 1.47846 * 119.99802 * 5.55576 * 16 12 11 19 19 C 1.39453 * 120.00027 * 55.07833 * 18 16 12 20 20 C 1.37933 * 119.73407 * 180.02562 * 19 18 16 21 21 C 1.38233 * 120.02163 * 0.10130 * 20 19 18 22 22 C 1.38706 * 120.58757 * 0.02562 * 21 20 19 23 23 C 1.37677 * 119.97064 * 359.80659 * 22 21 20 24 24 C 1.50633 * 121.57802 * 180.32031 * 23 22 21 25 25 O 1.42718 * 110.28887 * 343.97011 * 24 23 22 26 26 C 1.43212 * 113.12220 * 51.64487 * 25 24 23 27 27 C 1.51228 * 118.62863 * 179.58532 * 22 21 20 28 28 H 0.96994 * 119.99815 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99983 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46750 * 60.00801 * 10 9 7 31 31 H 1.08993 * 109.47089 * 299.99839 * 10 9 7 32 32 H 1.08994 * 109.47010 * 60.00094 * 11 10 9 33 33 H 1.09000 * 109.46720 * 300.00061 * 11 10 9 34 34 H 1.08997 * 109.46899 * 34.87473 * 13 12 11 35 35 H 1.09001 * 109.46966 * 154.87375 * 13 12 11 36 36 H 1.08992 * 109.47407 * 185.00088 * 14 13 12 37 37 H 1.08999 * 109.47034 * 305.00161 * 14 13 12 38 38 H 0.96696 * 113.99289 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.13034 * 359.97438 * 19 18 16 40 40 H 1.07995 * 119.99204 * 180.08323 * 20 19 18 41 41 H 1.07992 * 119.70798 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.33003 * 223.72139 * 24 23 22 43 43 H 1.08997 * 109.19703 * 104.14350 * 24 23 22 44 44 H 1.08998 * 109.64276 * 49.10398 * 26 25 24 45 45 H 1.09002 * 109.63714 * 169.51063 * 26 25 24 46 46 H 1.09006 * 109.68105 * 43.08813 * 27 22 21 47 47 H 1.09001 * 109.41268 * 283.11938 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 7 6.3489 -3.4600 -0.0017 13 6 6.7153 -4.0949 1.2669 14 6 8.0344 -3.5054 1.7699 15 8 7.8510 -2.1221 2.0785 16 6 6.6857 -4.0432 -1.1691 17 8 7.2032 -5.1431 -1.1720 18 6 6.4259 -3.3451 -2.4462 19 6 6.9288 -2.0611 -2.6539 20 6 6.6826 -1.4147 -3.8472 21 6 5.9383 -2.0385 -4.8310 22 6 5.4325 -3.3145 -4.6310 23 6 5.6739 -3.9721 -3.4458 24 6 5.1483 -5.3609 -3.1930 25 8 4.1252 -5.6818 -4.1348 26 6 4.5211 -5.4590 -5.4930 27 6 4.6162 -3.9513 -5.7333 28 1 -0.4849 0.8400 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.8485 -3.0426 -0.8909 31 1 3.8492 -3.0422 0.8891 32 1 5.8797 -1.6198 0.8889 33 1 5.8797 -1.6197 -0.8911 34 1 5.9322 -3.9139 2.0031 35 1 6.8311 -5.1681 1.1159 36 1 8.3524 -4.0384 2.6658 37 1 8.7961 -3.6073 0.9969 38 1 8.6486 -1.6827 2.4037 39 1 7.5079 -1.5745 -1.8831 40 1 7.0712 -0.4208 -4.0130 41 1 5.7483 -1.5276 -5.7632 42 1 4.7393 -5.4138 -2.1839 43 1 5.9650 -6.0762 -3.2893 44 1 5.4922 -5.9205 -5.6720 45 1 3.7806 -5.8911 -6.1660 46 1 5.0927 -3.7671 -6.6962 47 1 3.6147 -3.5210 -5.7373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569935466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:08 Heat of formation + Delta-G solvation = -79.502985 kcal Electronic energy + Delta-G solvation = -30177.936426 eV Core-core repulsion = 26133.461094 eV Total energy + Delta-G solvation = -4044.475331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.90708 -39.41429 -37.51365 -37.11776 -35.96804 -34.26810 -33.19083 -31.84090 -31.51493 -30.37177 -29.23439 -27.72569 -25.72596 -24.22224 -24.05378 -23.50429 -22.19504 -21.39598 -20.26192 -19.26288 -17.92441 -17.59146 -16.93539 -16.70991 -16.62448 -16.48515 -15.57398 -15.37786 -15.21561 -14.64316 -14.48687 -14.26059 -13.92559 -13.86675 -13.66588 -13.57352 -13.46987 -13.12030 -12.86920 -12.67951 -12.47507 -12.22694 -12.06836 -11.71826 -11.69656 -11.49915 -11.39719 -11.10412 -11.04867 -10.77262 -10.74955 -10.28256 -10.16803 -9.90754 -9.65181 -9.58343 -8.89055 -8.85416 -8.68051 -8.53488 -7.23124 -5.74398 -3.10605 0.95482 1.24272 2.59895 2.94945 3.38204 3.40523 3.45848 3.62011 3.81838 4.10477 4.38015 4.49770 4.58530 4.60673 4.75720 4.95774 4.98104 5.00495 5.04992 5.12776 5.16796 5.29752 5.32538 5.33499 5.44406 5.51016 5.54994 5.56932 5.63445 5.71315 5.73261 5.76272 5.78294 5.80705 5.95288 5.99719 6.20865 6.31046 6.37856 6.42843 6.62607 6.77538 6.79543 7.05013 7.34915 7.47124 8.00745 8.08554 8.43713 9.22111 9.94069 10.13347 11.43991 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.005252 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.604397 B = 5329.875786 C = 7297.161817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.751 5.751 10 C 0.145 3.855 11 C 0.089 3.911 12 N -0.590 5.590 13 C 0.112 3.888 14 C 0.062 3.938 15 O -0.566 6.566 16 C 0.563 3.437 17 O -0.543 6.543 18 C -0.113 4.113 19 C -0.088 4.088 20 C -0.119 4.119 21 C -0.097 4.097 22 C -0.077 4.077 23 C -0.070 4.070 24 C 0.102 3.898 25 O -0.371 6.371 26 C 0.056 3.944 27 C -0.114 4.114 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.376 0.624 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.359 -7.268 -6.868 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.397 5.397 10 C 0.017 3.983 11 C -0.034 4.034 12 N -0.321 5.321 13 C -0.011 4.011 14 C -0.017 4.017 15 O -0.371 6.371 16 C 0.352 3.648 17 O -0.421 6.421 18 C -0.116 4.116 19 C -0.106 4.106 20 C -0.137 4.137 21 C -0.115 4.115 22 C -0.077 4.077 23 C -0.071 4.071 24 C 0.026 3.974 25 O -0.289 6.289 26 C -0.020 4.020 27 C -0.151 4.151 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.223 0.777 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.104 0.896 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.589 -8.151 -6.980 21.464 hybrid contribution 1.337 1.751 0.239 2.216 sum 19.927 -6.400 -6.741 21.988 Atomic orbital electron populations 1.69704 1.05076 1.25765 1.57629 1.24652 0.95224 0.97125 1.02055 0.86557 0.79287 0.85035 0.77757 1.21080 1.21715 1.20240 1.19027 0.80355 0.94785 1.42903 0.89239 1.42518 1.04069 1.01812 1.91272 1.20923 0.88670 0.89775 0.98926 1.22177 0.92528 0.84283 1.04407 1.47715 1.55171 1.24214 1.04983 1.21605 0.96202 0.98144 0.85159 1.22627 0.97806 0.82668 0.98601 1.86558 1.39330 1.23040 1.88217 1.18409 0.77768 0.84884 0.83763 1.90749 1.44398 1.19531 1.87425 1.19604 1.02184 0.95492 0.94331 1.21110 0.99129 0.92756 0.97654 1.21016 0.99249 1.00026 0.93379 1.21200 0.96753 0.94062 0.99464 1.19487 0.98645 0.94872 0.94701 1.20094 0.96950 0.97125 0.92943 1.21463 0.91190 0.91020 0.93749 1.88131 1.38996 1.86505 1.15241 1.22627 1.00808 0.94426 0.84178 1.21228 1.00682 0.96574 0.96635 0.93076 0.80686 0.95533 0.95419 0.88727 0.89793 0.89212 0.87992 0.92665 0.93548 0.77745 0.85309 0.85289 0.85553 0.87825 0.90705 0.92741 0.88235 0.89599 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.69 13.97 55.49 0.78 -28.91 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.17 27.73 -169.99 -4.71 17.46 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.75 -18.18 5.41 -59.91 -0.32 -18.50 16 10 C 0.15 2.94 6.58 -4.04 -0.03 2.91 16 11 C 0.09 1.42 5.15 -4.04 -0.02 1.40 16 12 N -0.59 -8.51 2.46 -174.80 -0.43 -8.94 16 13 C 0.11 1.36 5.95 -4.04 -0.02 1.34 16 14 C 0.06 0.62 7.39 37.15 0.27 0.89 16 15 O -0.57 -5.99 12.05 -35.23 -0.42 -6.42 16 16 C 0.56 8.69 6.11 -12.33 -0.08 8.62 16 17 O -0.54 -9.16 15.59 5.32 0.08 -9.08 16 18 C -0.11 -1.69 4.94 -104.89 -0.52 -2.21 16 19 C -0.09 -1.16 7.52 -39.24 -0.30 -1.46 16 20 C -0.12 -1.42 10.03 -39.69 -0.40 -1.82 16 21 C -0.10 -1.16 9.66 -39.41 -0.38 -1.54 16 22 C -0.08 -1.03 5.78 -104.39 -0.60 -1.63 16 23 C -0.07 -1.05 5.83 -104.23 -0.61 -1.66 16 24 C 0.10 1.52 5.45 35.97 0.20 1.72 16 25 O -0.37 -5.51 10.81 -35.23 -0.38 -5.89 16 26 C 0.06 0.62 6.83 37.14 0.25 0.87 16 27 C -0.11 -1.24 6.04 -27.64 -0.17 -1.40 16 28 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 29 H 0.36 8.41 5.53 -40.82 -0.23 8.19 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.52 6.68 -51.93 -0.35 1.17 16 33 H 0.08 1.31 4.44 -51.93 -0.23 1.08 16 34 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.10 1.21 7.22 -51.93 -0.37 0.83 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.38 2.30 9.12 45.56 0.42 2.72 16 39 H 0.13 1.51 7.48 -52.49 -0.39 1.11 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.10 1.66 7.51 -51.93 -0.39 1.27 16 43 H 0.08 1.06 7.98 -51.93 -0.41 0.65 16 44 H 0.05 0.53 8.07 -51.93 -0.42 0.11 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -35.88 379.64 -8.54 -44.42 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.20 Total: 11.18 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.65 Total: -1.05 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.02 Total: -56.35 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.72 Total: -21.38 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.88 -8.54 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569935466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.082 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds