Wall clock time and date at job start Tue Mar 31 2020 21:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48506 * 109.47190 * 270.00282 * 3 2 1 5 5 H 1.48497 * 109.47261 * 30.00021 * 3 2 1 6 6 H 1.48492 * 109.47310 * 150.00375 * 3 2 1 7 7 C 1.38807 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00409 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00008 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00220 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46987 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47024 * 180.02562 * 11 10 9 13 13 C 1.46509 * 119.99628 * 269.99903 * 12 11 10 14 14 C 1.52992 * 109.47039 * 274.87309 * 13 12 11 15 15 O 1.42910 * 109.47087 * 65.00041 * 14 13 12 16 16 C 1.34777 * 120.00562 * 89.99448 * 12 11 10 17 17 O 1.21551 * 120.00296 * 185.55065 * 16 12 11 18 18 C 1.47846 * 119.99802 * 5.55576 * 16 12 11 19 19 C 1.39453 * 120.00027 * 55.07833 * 18 16 12 20 20 C 1.37933 * 119.73407 * 180.02562 * 19 18 16 21 21 C 1.38233 * 120.02163 * 0.10130 * 20 19 18 22 22 C 1.38706 * 120.58757 * 0.02562 * 21 20 19 23 23 C 1.37677 * 119.97064 * 359.80659 * 22 21 20 24 24 C 1.50633 * 121.57802 * 180.32031 * 23 22 21 25 25 O 1.42718 * 110.28887 * 343.97011 * 24 23 22 26 26 C 1.43212 * 113.12220 * 51.64487 * 25 24 23 27 27 C 1.51228 * 118.62863 * 179.58532 * 22 21 20 28 28 H 0.96994 * 119.99815 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99983 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46750 * 60.00801 * 10 9 7 31 31 H 1.08993 * 109.47089 * 299.99839 * 10 9 7 32 32 H 1.08994 * 109.47010 * 60.00094 * 11 10 9 33 33 H 1.09000 * 109.46720 * 300.00061 * 11 10 9 34 34 H 1.08997 * 109.46899 * 34.87473 * 13 12 11 35 35 H 1.09001 * 109.46966 * 154.87375 * 13 12 11 36 36 H 1.08992 * 109.47407 * 185.00088 * 14 13 12 37 37 H 1.08999 * 109.47034 * 305.00161 * 14 13 12 38 38 H 0.96696 * 113.99289 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.13034 * 359.97438 * 19 18 16 40 40 H 1.07995 * 119.99204 * 180.08323 * 20 19 18 41 41 H 1.07992 * 119.70798 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.33003 * 223.72139 * 24 23 22 43 43 H 1.08997 * 109.19703 * 104.14350 * 24 23 22 44 44 H 1.08998 * 109.64276 * 49.10398 * 26 25 24 45 45 H 1.09002 * 109.63714 * 169.51063 * 26 25 24 46 46 H 1.09006 * 109.68105 * 43.08813 * 27 22 21 47 47 H 1.09001 * 109.41268 * 283.11938 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 7 6.3489 -3.4600 -0.0017 13 6 6.7153 -4.0949 1.2669 14 6 8.0344 -3.5054 1.7699 15 8 7.8510 -2.1221 2.0785 16 6 6.6857 -4.0432 -1.1691 17 8 7.2032 -5.1431 -1.1720 18 6 6.4259 -3.3451 -2.4462 19 6 6.9288 -2.0611 -2.6539 20 6 6.6826 -1.4147 -3.8472 21 6 5.9383 -2.0385 -4.8310 22 6 5.4325 -3.3145 -4.6310 23 6 5.6739 -3.9721 -3.4458 24 6 5.1483 -5.3609 -3.1930 25 8 4.1252 -5.6818 -4.1348 26 6 4.5211 -5.4590 -5.4930 27 6 4.6162 -3.9513 -5.7333 28 1 -0.4849 0.8400 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 3.8485 -3.0426 -0.8909 31 1 3.8492 -3.0422 0.8891 32 1 5.8797 -1.6198 0.8889 33 1 5.8797 -1.6197 -0.8911 34 1 5.9322 -3.9139 2.0031 35 1 6.8311 -5.1681 1.1159 36 1 8.3524 -4.0384 2.6658 37 1 8.7961 -3.6073 0.9969 38 1 8.6486 -1.6827 2.4037 39 1 7.5079 -1.5745 -1.8831 40 1 7.0712 -0.4208 -4.0130 41 1 5.7483 -1.5276 -5.7632 42 1 4.7393 -5.4138 -2.1839 43 1 5.9650 -6.0762 -3.2893 44 1 5.4922 -5.9205 -5.6720 45 1 3.7806 -5.8911 -6.1660 46 1 5.0927 -3.7671 -6.6962 47 1 3.6147 -3.5210 -5.7373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569935466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:06 Heat of formation + Delta-G solvation = -106.329877 kcal Electronic energy + Delta-G solvation = -30179.099727 eV Core-core repulsion = 26133.461094 eV Total energy + Delta-G solvation = -4045.638633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.98622 -40.49223 -38.50610 -38.14046 -37.34533 -35.91458 -34.15195 -33.57950 -32.82772 -31.46134 -30.40909 -29.16757 -26.78419 -25.61713 -25.07529 -24.83136 -23.43175 -22.96805 -21.22349 -20.51447 -19.65669 -18.66682 -18.05682 -17.74899 -17.73572 -17.58046 -16.68725 -16.52051 -16.32521 -16.22781 -15.74588 -15.50580 -15.38098 -15.21867 -14.82556 -14.68222 -14.60243 -14.50707 -14.17023 -13.82591 -13.59061 -13.44418 -13.15097 -13.04603 -12.94753 -12.80612 -12.66753 -12.55346 -12.42228 -12.21607 -12.06670 -11.82666 -11.67811 -11.20055 -11.02086 -10.86974 -10.69836 -9.94760 -9.73565 -9.61259 -9.36137 -8.03402 -5.39724 -0.06408 0.25543 1.38553 1.42784 1.43876 1.51182 1.83001 2.48905 2.61939 2.82539 3.18588 3.27427 3.41508 3.54050 3.60059 3.77580 3.88720 3.98642 4.03705 4.09363 4.11971 4.18781 4.21453 4.25583 4.30070 4.42886 4.46082 4.51586 4.52885 4.62233 4.70803 4.74900 4.79956 4.83000 4.89383 4.94539 5.03130 5.07141 5.23461 5.35995 5.43190 5.46889 5.71478 5.86520 6.03583 6.15576 6.20144 6.88746 6.93781 7.04678 7.76307 7.99629 9.18090 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.005252 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.604397 B = 5329.875786 C = 7297.161817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.245 1.245 7 C -0.240 4.240 8 H 0.047 0.953 9 N -0.748 5.748 10 C 0.149 3.851 11 C 0.109 3.891 12 N -0.587 5.587 13 C 0.102 3.898 14 C 0.072 3.928 15 O -0.585 6.585 16 C 0.563 3.437 17 O -0.564 6.564 18 C -0.136 4.136 19 C -0.095 4.095 20 C -0.118 4.118 21 C -0.098 4.098 22 C -0.091 4.091 23 C -0.096 4.096 24 C 0.109 3.891 25 O -0.397 6.397 26 C 0.048 3.952 27 C -0.112 4.112 28 H 0.260 0.740 29 H 0.370 0.630 30 H 0.007 0.993 31 H 0.019 0.981 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.396 0.604 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.024 -5.102 -7.798 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.252 4.252 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.169 1.169 7 C -0.371 4.371 8 H 0.065 0.935 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.014 4.014 12 N -0.317 5.317 13 C -0.020 4.020 14 C -0.007 4.007 15 O -0.393 6.393 16 C 0.352 3.648 17 O -0.444 6.444 18 C -0.139 4.139 19 C -0.114 4.114 20 C -0.135 4.135 21 C -0.116 4.116 22 C -0.091 4.091 23 C -0.097 4.097 24 C 0.033 3.967 25 O -0.316 6.316 26 C -0.028 4.028 27 C -0.149 4.149 28 H 0.068 0.932 29 H 0.204 0.796 30 H 0.025 0.975 31 H 0.038 0.962 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.246 0.754 39 H 0.161 0.839 40 H 0.178 0.822 41 H 0.174 0.826 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.316 -6.006 -7.896 23.511 hybrid contribution 0.442 0.958 0.495 1.165 sum 21.758 -5.048 -7.401 23.530 Atomic orbital electron populations 1.69904 1.07333 1.26920 1.59166 1.25567 0.96179 1.01533 1.01961 0.85359 0.78873 0.78870 0.78442 1.19920 1.22068 1.16929 1.18923 0.82458 0.93383 1.42323 0.93475 1.42381 1.02460 1.03541 1.91043 1.20959 0.91498 0.87951 0.97466 1.21877 0.89273 0.85010 1.05244 1.47717 1.54627 1.23755 1.05650 1.21823 0.97662 0.98368 0.84163 1.22490 0.95850 0.82850 0.99520 1.86485 1.41146 1.23241 1.88460 1.18599 0.77299 0.84613 0.84264 1.90723 1.45517 1.20403 1.87744 1.19728 1.03401 0.96612 0.94121 1.21360 0.99120 0.92079 0.98818 1.21447 0.98366 1.01140 0.92565 1.21621 0.95798 0.93467 1.00706 1.19882 0.98851 0.95697 0.94717 1.20233 0.98131 0.97248 0.94132 1.21246 0.90891 0.91801 0.92806 1.88080 1.39581 1.86800 1.17120 1.22939 1.02217 0.95170 0.82455 1.21297 1.00184 0.95935 0.97453 0.93173 0.79634 0.97466 0.96247 0.87860 0.88815 0.89516 0.88101 0.90085 0.93776 0.75419 0.83856 0.82163 0.82559 0.90394 0.90796 0.91564 0.86004 0.86187 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 3 Si 0.96 44.88 27.73 68.60 1.90 46.78 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 7 C -0.24 -14.18 10.47 84.03 0.88 -13.30 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.75 -35.84 5.41 -343.44 -1.86 -37.70 16 10 C 0.15 6.09 6.58 86.38 0.57 6.66 16 11 C 0.11 3.37 5.15 86.38 0.44 3.81 16 12 N -0.59 -16.76 2.46 -825.22 -2.03 -18.79 16 13 C 0.10 2.43 5.95 86.37 0.51 2.95 16 14 C 0.07 1.29 7.39 71.98 0.53 1.82 16 15 O -0.58 -10.87 12.05 -148.98 -1.79 -12.67 16 16 C 0.56 17.55 6.11 86.79 0.53 18.08 16 17 O -0.56 -19.53 15.59 -3.88 -0.06 -19.59 16 18 C -0.14 -4.03 4.94 -20.04 -0.10 -4.13 16 19 C -0.10 -2.33 7.52 22.49 0.17 -2.16 16 20 C -0.12 -2.44 10.03 22.20 0.22 -2.22 16 21 C -0.10 -2.08 9.66 22.38 0.22 -1.87 16 22 C -0.09 -2.33 5.78 -19.72 -0.11 -2.44 16 23 C -0.10 -2.92 5.83 -19.61 -0.11 -3.03 16 24 C 0.11 3.44 5.45 71.21 0.39 3.83 16 25 O -0.40 -12.22 10.81 -148.98 -1.61 -13.83 16 26 C 0.05 1.01 6.83 71.97 0.49 1.50 16 27 C -0.11 -2.24 6.04 30.00 0.18 -2.06 16 28 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.37 16.35 5.53 -92.70 -0.51 15.84 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 3.08 6.68 -2.39 -0.02 3.06 16 33 H 0.09 2.75 4.44 -2.39 -0.01 2.74 16 34 H 0.09 2.11 8.11 -2.39 -0.02 2.09 16 35 H 0.10 2.41 7.22 -2.39 -0.02 2.40 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.40 3.69 9.12 -74.06 -0.68 3.02 16 39 H 0.14 2.97 7.48 -2.91 -0.02 2.95 16 40 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.08 2.75 7.51 -2.39 -0.02 2.74 16 43 H 0.07 2.24 7.98 -2.39 -0.02 2.22 16 44 H 0.07 1.22 8.07 -2.39 -0.02 1.20 16 45 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -80.07 379.64 -0.11 -80.18 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.24 Total: 34.93 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.28 Total: 4.27 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -3.58 Total: -120.08 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -3.47 Total: -46.09 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Total: -80.07 -0.11 -80.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569935466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.146 kcal (2) G-P(sol) polarization free energy of solvation -80.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds