Wall clock time and date at job start Tue Mar 31 2020 22:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99884 * 2 1 4 4 H 1.48494 * 109.47157 * 269.99880 * 3 2 1 5 5 H 1.48496 * 109.47061 * 30.00295 * 3 2 1 6 6 H 1.48504 * 109.46907 * 149.99974 * 3 2 1 7 7 C 1.38809 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99789 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00242 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46694 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46952 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47113 * 180.02562 * 12 11 10 14 14 C 1.42903 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46726 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47465 * 65.00068 * 15 14 13 17 17 C 1.34776 * 120.00000 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99811 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99739 * 179.97438 * 17 16 15 20 20 H 1.09004 * 110.83352 * 300.69854 * 19 17 16 21 21 C 1.54703 * 110.94522 * 64.42090 * 19 17 16 22 22 O 1.43761 * 102.79883 * 92.79378 * 21 19 17 23 23 C 1.36133 * 109.28609 * 27.54781 * 22 21 19 24 24 C 1.39288 * 129.87714 * 161.43773 * 23 22 21 25 25 C 1.37933 * 120.24296 * 179.61734 * 24 23 22 26 26 C 1.38283 * 120.35004 * 359.96908 * 25 24 23 27 27 C 1.38347 * 119.76767 * 0.20355 * 26 25 24 28 28 C 1.37671 * 120.00662 * 0.02562 * 27 26 25 29 29 H 0.97003 * 120.00351 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99573 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47005 * 60.00289 * 10 9 7 32 32 H 1.08995 * 109.47191 * 300.00162 * 10 9 7 33 33 H 1.08997 * 109.47562 * 60.00674 * 11 10 9 34 34 H 1.08998 * 109.47270 * 299.99589 * 11 10 9 35 35 H 1.09007 * 109.46516 * 59.99962 * 12 11 10 36 36 H 1.09004 * 109.47113 * 300.00431 * 12 11 10 37 37 H 1.09002 * 109.47382 * 59.99956 * 14 13 12 38 38 H 1.09001 * 109.46938 * 299.99942 * 14 13 12 39 39 H 1.09002 * 109.46642 * 184.99995 * 15 14 13 40 40 H 1.09002 * 109.47069 * 304.99524 * 15 14 13 41 41 H 0.96999 * 119.99644 * 359.97438 * 16 15 14 42 42 H 1.09009 * 110.74954 * 211.11914 * 21 19 17 43 43 H 1.09000 * 110.74887 * 334.28109 * 21 19 17 44 44 H 1.08002 * 119.87541 * 359.59163 * 24 23 22 45 45 H 1.07997 * 119.82121 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.11577 * 180.21932 * 26 25 24 47 47 H 1.07998 * 120.01228 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1912 0.0000 12 6 6.3814 -3.5163 -0.0007 13 8 7.7863 -3.2552 -0.0001 14 6 8.5962 -4.4325 -0.0012 15 6 10.0737 -4.0350 0.0002 16 7 10.3929 -3.3461 1.2531 17 6 11.6452 -2.9012 1.4774 18 8 12.5079 -3.0715 0.6421 19 6 11.9734 -2.1921 2.7660 20 1 11.3589 -1.2997 2.8848 21 6 11.8100 -3.1412 3.9767 22 8 13.1336 -3.6771 4.1422 23 6 14.0441 -2.7779 3.6778 24 6 15.4111 -2.6814 3.9268 25 6 16.1559 -1.6814 3.3371 26 6 15.5532 -0.7664 2.4933 27 6 14.1952 -0.8531 2.2436 28 6 13.4486 -1.8474 2.8346 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0004 31 1 3.8491 -3.0422 -0.8902 32 1 3.8484 -3.0426 0.8897 33 1 5.8797 -1.6198 0.8900 34 1 5.8796 -1.6197 -0.8900 35 1 6.1179 -4.0875 -0.8909 36 1 6.1181 -4.0883 0.8891 37 1 8.3791 -5.0221 -0.8918 38 1 8.3786 -5.0240 0.8881 39 1 10.6905 -4.9291 -0.0902 40 1 10.2719 -3.3703 -0.8406 41 1 9.7028 -3.2096 1.9209 42 1 11.5043 -2.5864 4.8638 43 1 11.0950 -3.9330 3.7529 44 1 15.8896 -3.3921 4.5845 45 1 17.2153 -1.6127 3.5352 46 1 16.1406 0.0130 2.0308 47 1 13.7205 -0.1409 1.5850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571353614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:46 Heat of formation + Delta-G solvation = -73.020815 kcal Electronic energy + Delta-G solvation = -27248.397391 eV Core-core repulsion = 23204.203147 eV Total energy + Delta-G solvation = -4044.194243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.88857 -39.61387 -38.29361 -37.77403 -35.67563 -34.90126 -33.35031 -32.38867 -30.77948 -30.42393 -29.94697 -28.91593 -25.37380 -24.74337 -23.35188 -22.67890 -22.24218 -22.14454 -21.05374 -20.73115 -18.30174 -17.58425 -17.36934 -17.21472 -16.90096 -16.74736 -16.28568 -15.91881 -15.70958 -15.16082 -14.74047 -14.53098 -14.28277 -14.14785 -13.88632 -13.79271 -13.60836 -13.43029 -13.21409 -12.96650 -12.74384 -12.37830 -12.19400 -12.07519 -11.95812 -11.65596 -11.62378 -11.20136 -11.06629 -10.97362 -10.76790 -10.73697 -10.27216 -10.16658 -9.78283 -9.62751 -9.46021 -9.28310 -8.93285 -8.55208 -7.27683 -5.80026 -3.16247 0.87879 1.03023 2.18326 2.69927 2.82092 3.35464 3.36365 3.38951 3.41831 3.44070 3.71947 4.01456 4.31679 4.40988 4.55257 4.56637 4.68248 4.71636 4.76233 4.86035 4.87241 5.00501 5.01714 5.09863 5.13298 5.13486 5.23281 5.26025 5.40008 5.49376 5.50916 5.61429 5.70408 5.89880 5.90159 5.92383 6.01260 6.02132 6.11922 6.15060 6.19065 6.64076 6.68784 6.75824 7.00188 7.08546 7.82165 7.95538 8.38803 9.17614 9.89985 10.09581 11.38170 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.001758 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.647165 B =15926.375850 C =16752.281462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.160 3.840 11 C -0.128 4.128 12 C 0.068 3.932 13 O -0.388 6.388 14 C 0.048 3.952 15 C 0.123 3.877 16 N -0.723 5.723 17 C 0.524 3.476 18 O -0.525 6.525 19 C -0.104 4.104 20 H 0.127 0.873 21 C 0.063 3.937 22 O -0.301 6.301 23 C 0.111 3.889 24 C -0.141 4.141 25 C -0.081 4.081 26 C -0.149 4.149 27 C -0.051 4.051 28 C -0.150 4.150 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.405 0.595 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.317 -7.832 8.025 34.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.033 3.967 11 C -0.166 4.166 12 C -0.009 4.009 13 O -0.308 6.308 14 C -0.029 4.029 15 C 0.000 4.000 16 N -0.376 5.376 17 C 0.308 3.692 18 O -0.400 6.400 19 C -0.125 4.125 20 H 0.144 0.856 21 C -0.012 4.012 22 O -0.214 6.214 23 C 0.066 3.934 24 C -0.159 4.159 25 C -0.099 4.099 26 C -0.167 4.167 27 C -0.069 4.069 28 C -0.151 4.151 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.240 0.760 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 32.781 -8.097 7.496 34.588 hybrid contribution -0.228 1.117 0.154 1.151 sum 32.552 -6.980 7.650 34.160 Atomic orbital electron populations 1.69701 1.05106 1.25897 1.57405 1.24683 0.95271 0.97287 1.01900 0.86525 0.79192 0.84831 0.77851 1.21003 1.21655 1.20307 1.19059 0.80552 0.94812 1.43299 0.89188 1.42679 1.04089 1.02178 1.91243 1.20486 0.87893 0.89592 0.98732 1.21716 0.95605 0.96123 1.03178 1.22495 0.79623 0.98379 1.00403 1.87911 1.17348 1.30015 1.95504 1.22722 0.89948 0.88645 1.01565 1.21421 0.93632 0.97913 0.87050 1.45894 1.10994 1.59635 1.21042 1.20107 0.82287 0.78858 0.87901 1.90735 1.47046 1.55885 1.46355 1.21579 0.95960 1.00671 0.94294 0.85558 1.23827 0.83907 0.97007 0.96501 1.86839 1.15117 1.39438 1.80042 1.19575 0.91437 0.88823 0.93579 1.20240 0.90252 1.01315 1.04128 1.20900 0.99689 0.93620 0.95733 1.21041 0.94271 1.00703 1.00714 1.20290 0.93547 0.96306 0.96776 1.20126 0.93751 0.99551 1.01682 0.93008 0.80572 0.95424 0.95484 0.91268 0.91201 0.92979 0.93060 0.91397 0.92551 0.89917 0.90360 0.76017 0.88908 0.87225 0.85373 0.85051 0.85310 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.09 27.74 -169.99 -4.71 17.37 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.76 -18.02 5.41 -59.91 -0.32 -18.35 16 10 C 0.16 2.99 6.26 -4.04 -0.03 2.97 16 11 C -0.13 -1.89 5.70 -26.73 -0.15 -2.04 16 12 C 0.07 0.78 5.94 37.16 0.22 1.00 16 13 O -0.39 -4.27 10.29 -35.23 -0.36 -4.63 16 14 C 0.05 0.37 6.07 37.16 0.23 0.60 16 15 C 0.12 1.03 6.06 -4.04 -0.02 1.01 16 16 N -0.72 -5.93 5.32 -60.30 -0.32 -6.25 16 17 C 0.52 5.41 7.12 -10.99 -0.08 5.33 16 18 O -0.53 -7.59 16.14 5.56 0.09 -7.50 16 19 C -0.10 -0.83 3.52 -91.56 -0.32 -1.15 16 20 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 21 C 0.06 0.41 7.53 38.05 0.29 0.70 16 22 O -0.30 -3.01 11.10 -20.16 -0.22 -3.23 16 23 C 0.11 1.14 7.04 -38.92 -0.27 0.87 16 24 C -0.14 -1.23 10.06 -39.30 -0.40 -1.62 16 25 C -0.08 -0.60 10.02 -39.68 -0.40 -1.00 16 26 C -0.15 -1.16 10.07 -39.52 -0.40 -1.56 16 27 C -0.05 -0.47 10.03 -39.75 -0.40 -0.87 16 28 C -0.15 -1.49 4.94 -104.09 -0.51 -2.00 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 30 H 0.36 8.41 5.53 -40.82 -0.23 8.18 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.41 2.50 8.47 -40.82 -0.35 2.15 16 42 H 0.09 0.41 8.14 -51.92 -0.42 -0.02 16 43 H 0.11 0.53 7.77 -51.93 -0.40 0.13 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 395.10 15.07 5.95 5.95 Total: -1.00 -36.58 395.10 -8.96 -45.54 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.33 Total: 4.54 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.50 Total: -4.93 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.13 Total: -53.11 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.50 Total: -15.36 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.58 -8.96 -45.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571353614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.484 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds