Wall clock time and date at job start Tue Mar 31 2020 22:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99884 * 2 1 4 4 H 1.48494 * 109.47157 * 269.99880 * 3 2 1 5 5 H 1.48496 * 109.47061 * 30.00295 * 3 2 1 6 6 H 1.48504 * 109.46907 * 149.99974 * 3 2 1 7 7 C 1.38809 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99789 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00242 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46694 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46952 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47113 * 180.02562 * 12 11 10 14 14 C 1.42903 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46726 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47465 * 65.00068 * 15 14 13 17 17 C 1.34776 * 120.00000 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99811 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99739 * 179.97438 * 17 16 15 20 20 H 1.09004 * 110.83352 * 300.69854 * 19 17 16 21 21 C 1.54703 * 110.94522 * 64.42090 * 19 17 16 22 22 O 1.43761 * 102.79883 * 92.79378 * 21 19 17 23 23 C 1.36133 * 109.28609 * 27.54781 * 22 21 19 24 24 C 1.39288 * 129.87714 * 161.43773 * 23 22 21 25 25 C 1.37933 * 120.24296 * 179.61734 * 24 23 22 26 26 C 1.38283 * 120.35004 * 359.96908 * 25 24 23 27 27 C 1.38347 * 119.76767 * 0.20355 * 26 25 24 28 28 C 1.37671 * 120.00662 * 0.02562 * 27 26 25 29 29 H 0.97003 * 120.00351 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99573 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47005 * 60.00289 * 10 9 7 32 32 H 1.08995 * 109.47191 * 300.00162 * 10 9 7 33 33 H 1.08997 * 109.47562 * 60.00674 * 11 10 9 34 34 H 1.08998 * 109.47270 * 299.99589 * 11 10 9 35 35 H 1.09007 * 109.46516 * 59.99962 * 12 11 10 36 36 H 1.09004 * 109.47113 * 300.00431 * 12 11 10 37 37 H 1.09002 * 109.47382 * 59.99956 * 14 13 12 38 38 H 1.09001 * 109.46938 * 299.99942 * 14 13 12 39 39 H 1.09002 * 109.46642 * 184.99995 * 15 14 13 40 40 H 1.09002 * 109.47069 * 304.99524 * 15 14 13 41 41 H 0.96999 * 119.99644 * 359.97438 * 16 15 14 42 42 H 1.09009 * 110.74954 * 211.11914 * 21 19 17 43 43 H 1.09000 * 110.74887 * 334.28109 * 21 19 17 44 44 H 1.08002 * 119.87541 * 359.59163 * 24 23 22 45 45 H 1.07997 * 119.82121 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.11577 * 180.21932 * 26 25 24 47 47 H 1.07998 * 120.01228 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1912 0.0000 12 6 6.3814 -3.5163 -0.0007 13 8 7.7863 -3.2552 -0.0001 14 6 8.5962 -4.4325 -0.0012 15 6 10.0737 -4.0350 0.0002 16 7 10.3929 -3.3461 1.2531 17 6 11.6452 -2.9012 1.4774 18 8 12.5079 -3.0715 0.6421 19 6 11.9734 -2.1921 2.7660 20 1 11.3589 -1.2997 2.8848 21 6 11.8100 -3.1412 3.9767 22 8 13.1336 -3.6771 4.1422 23 6 14.0441 -2.7779 3.6778 24 6 15.4111 -2.6814 3.9268 25 6 16.1559 -1.6814 3.3371 26 6 15.5532 -0.7664 2.4933 27 6 14.1952 -0.8531 2.2436 28 6 13.4486 -1.8474 2.8346 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0004 31 1 3.8491 -3.0422 -0.8902 32 1 3.8484 -3.0426 0.8897 33 1 5.8797 -1.6198 0.8900 34 1 5.8796 -1.6197 -0.8900 35 1 6.1179 -4.0875 -0.8909 36 1 6.1181 -4.0883 0.8891 37 1 8.3791 -5.0221 -0.8918 38 1 8.3786 -5.0240 0.8881 39 1 10.6905 -4.9291 -0.0902 40 1 10.2719 -3.3703 -0.8406 41 1 9.7028 -3.2096 1.9209 42 1 11.5043 -2.5864 4.8638 43 1 11.0950 -3.9330 3.7529 44 1 15.8896 -3.3921 4.5845 45 1 17.2153 -1.6127 3.5352 46 1 16.1406 0.0130 2.0308 47 1 13.7205 -0.1409 1.5850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571353614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:45 Heat of formation + Delta-G solvation = -99.545188 kcal Electronic energy + Delta-G solvation = -27249.547574 eV Core-core repulsion = 23204.203147 eV Total energy + Delta-G solvation = -4045.344426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.51315 -40.36738 -39.13162 -38.36574 -37.20247 -35.88053 -34.23367 -33.92151 -32.20313 -31.13189 -30.76630 -29.64898 -26.88301 -25.37654 -24.05197 -23.86771 -23.30892 -22.80706 -22.43532 -21.44628 -19.64909 -18.93341 -18.00685 -17.92438 -17.63832 -17.46996 -17.02395 -16.69005 -16.54922 -16.39631 -15.94714 -15.56440 -15.40310 -15.26278 -14.96609 -14.76503 -14.51122 -14.42716 -14.04514 -13.97082 -13.59425 -13.54653 -13.37193 -12.87855 -12.79603 -12.65455 -12.64421 -12.31674 -12.21633 -12.13219 -11.98329 -11.92388 -11.80987 -11.78204 -11.07355 -10.98775 -10.55175 -10.20348 -9.90481 -9.32272 -9.17732 -8.04404 -5.38760 0.26522 0.39655 1.38041 1.41480 1.43873 1.48919 2.04824 2.25489 2.47568 2.55863 2.78885 3.12559 3.27069 3.47870 3.65876 3.75585 3.84072 3.95476 4.08861 4.14896 4.18702 4.20662 4.33062 4.33779 4.36922 4.42119 4.48838 4.51746 4.58409 4.58488 4.66560 4.72232 4.75099 4.81165 4.86926 5.03143 5.29091 5.31001 5.32091 5.33864 5.41609 5.52841 5.62208 5.73650 6.15656 6.18776 6.23333 6.43011 7.06108 7.11370 7.82254 8.00731 9.16777 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.001758 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.647165 B =15926.375850 C =16752.281462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.250 1.250 7 C -0.240 4.240 8 H 0.058 0.942 9 N -0.761 5.761 10 C 0.155 3.845 11 C -0.117 4.117 12 C 0.075 3.925 13 O -0.404 6.404 14 C 0.051 3.949 15 C 0.124 3.876 16 N -0.711 5.711 17 C 0.521 3.479 18 O -0.574 6.574 19 C -0.101 4.101 20 H 0.149 0.851 21 C 0.062 3.938 22 O -0.321 6.321 23 C 0.087 3.913 24 C -0.154 4.154 25 C -0.082 4.082 26 C -0.154 4.154 27 C -0.071 4.071 28 C -0.170 4.170 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.417 0.583 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.140 0.860 45 H 0.161 0.839 46 H 0.151 0.849 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.252 -7.598 8.821 36.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.175 1.175 7 C -0.371 4.371 8 H 0.076 0.924 9 N -0.407 5.407 10 C 0.029 3.971 11 C -0.155 4.155 12 C -0.002 4.002 13 O -0.324 6.324 14 C -0.026 4.026 15 C 0.000 4.000 16 N -0.364 5.364 17 C 0.307 3.693 18 O -0.453 6.453 19 C -0.122 4.122 20 H 0.167 0.833 21 C -0.013 4.013 22 O -0.236 6.236 23 C 0.042 3.958 24 C -0.173 4.173 25 C -0.099 4.099 26 C -0.171 4.171 27 C -0.089 4.089 28 C -0.171 4.171 29 H 0.067 0.933 30 H 0.199 0.801 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.254 0.746 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.158 0.842 45 H 0.178 0.822 46 H 0.169 0.831 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 34.733 -7.899 8.311 36.576 hybrid contribution -0.820 0.925 -0.114 1.242 sum 33.912 -6.974 8.197 35.579 Atomic orbital electron populations 1.69884 1.07146 1.26799 1.59448 1.25552 0.96186 1.01428 1.02431 0.85377 0.78692 0.79385 0.78144 1.20474 1.22068 1.17476 1.19066 0.82715 0.93628 1.41718 0.92395 1.42727 1.02576 1.04339 1.91100 1.20665 0.90204 0.87486 0.98698 1.21524 0.92984 0.98056 1.02952 1.22320 0.79789 0.96388 1.01656 1.87865 1.17073 1.31742 1.95732 1.22839 0.88595 0.87834 1.03283 1.21412 0.94411 0.97690 0.86487 1.45854 1.10704 1.58686 1.21165 1.20548 0.82212 0.78358 0.88152 1.90707 1.48516 1.57982 1.48091 1.21643 0.95474 1.01536 0.93550 0.83345 1.24101 0.82921 0.97482 0.96791 1.86790 1.16349 1.40176 1.80266 1.19896 0.92193 0.89291 0.94452 1.20595 0.90117 1.02031 1.04534 1.21276 1.01030 0.92759 0.94872 1.21395 0.94035 1.01224 1.00494 1.20557 0.94449 0.96668 0.97208 1.20420 0.94889 0.99816 1.01959 0.93256 0.80058 0.95431 0.95063 0.91141 0.91784 0.92200 0.91413 0.90084 0.90366 0.89352 0.92270 0.74603 0.86469 0.85634 0.84198 0.82193 0.83128 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.84 13.97 21.65 0.30 -62.54 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 3 Si 0.96 45.17 27.74 68.60 1.90 47.07 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 7 C -0.24 -13.74 10.47 84.03 0.88 -12.86 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.76 -35.28 5.41 -343.46 -1.86 -37.14 16 10 C 0.16 5.55 6.26 86.38 0.54 6.09 16 11 C -0.12 -3.15 5.70 30.60 0.17 -2.98 16 12 C 0.08 1.49 5.94 71.99 0.43 1.91 16 13 O -0.40 -7.70 10.29 -148.98 -1.53 -9.23 16 14 C 0.05 0.64 6.07 71.98 0.44 1.08 16 15 C 0.12 1.89 6.06 86.38 0.52 2.41 16 16 N -0.71 -10.51 5.32 -463.06 -2.46 -12.97 16 17 C 0.52 10.43 7.12 87.66 0.62 11.05 16 18 O -0.57 -16.84 16.14 -3.03 -0.05 -16.89 16 19 C -0.10 -1.51 3.52 -11.41 -0.04 -1.55 16 20 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 21 C 0.06 0.71 7.53 72.56 0.55 1.26 16 22 O -0.32 -6.27 11.10 -95.07 -1.06 -7.33 16 23 C 0.09 1.76 7.04 22.70 0.16 1.92 16 24 C -0.15 -2.61 10.06 22.45 0.23 -2.38 16 25 C -0.08 -1.10 10.02 22.21 0.22 -0.88 16 26 C -0.15 -2.24 10.07 22.31 0.22 -2.01 16 27 C -0.07 -1.28 10.03 22.16 0.22 -1.06 16 28 C -0.17 -3.32 4.94 -19.52 -0.10 -3.42 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.37 16.16 5.53 -92.71 -0.51 15.65 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.42 4.09 8.47 -92.71 -0.79 3.30 16 42 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.13 0.95 7.77 -2.39 -0.02 0.93 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 46 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 47 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -80.87 395.10 0.41 -80.46 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.38 Total: 23.32 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.54 Total: -4.75 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.02 Total: -112.65 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -2.64 Total: -33.45 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Total: -80.87 0.41 -80.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571353614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.087 kcal (2) G-P(sol) polarization free energy of solvation -80.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds