Wall clock time and date at job start Tue Mar 31 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48504 * 109.47061 * 269.99710 * 3 2 1 5 5 H 1.48496 * 109.47316 * 30.00107 * 3 2 1 6 6 H 1.48499 * 109.47179 * 150.00165 * 3 2 1 7 7 C 1.38815 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99984 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.46728 * 180.02562 * 12 11 10 14 14 C 1.42899 * 113.99778 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46889 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46967 * 65.00094 * 15 14 13 17 17 C 1.34782 * 119.99886 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99651 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00035 * 179.97438 * 17 16 15 20 20 H 1.09001 * 110.83687 * 62.26845 * 19 17 16 21 21 C 1.54718 * 110.94144 * 298.54937 * 19 17 16 22 22 O 1.43772 * 102.79231 * 216.48562 * 21 19 17 23 23 C 1.36134 * 109.28393 * 27.55044 * 22 21 19 24 24 C 1.39285 * 129.87225 * 161.44727 * 23 22 21 25 25 C 1.37935 * 120.24220 * 179.55078 * 24 23 22 26 26 C 1.38280 * 120.35011 * 0.02562 * 25 24 23 27 27 C 1.38353 * 119.76767 * 0.19314 * 26 25 24 28 28 C 1.37741 * 119.97338 * 359.97438 * 27 26 25 29 29 H 0.97010 * 119.99657 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00485 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47175 * 59.99749 * 10 9 7 32 32 H 1.08996 * 109.47197 * 299.99991 * 10 9 7 33 33 H 1.09000 * 109.46866 * 59.99938 * 11 10 9 34 34 H 1.09001 * 109.46611 * 300.00055 * 11 10 9 35 35 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 36 36 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 37 37 H 1.08997 * 109.47171 * 299.99768 * 14 13 12 38 38 H 1.08997 * 109.47442 * 59.99964 * 14 13 12 39 39 H 1.09004 * 109.47113 * 184.99738 * 15 14 13 40 40 H 1.08993 * 109.47646 * 305.00069 * 15 14 13 41 41 H 0.96995 * 120.00166 * 359.97438 * 16 15 14 42 42 H 1.08990 * 110.74640 * 334.81243 * 21 19 17 43 43 H 1.08998 * 110.74394 * 98.16169 * 21 19 17 44 44 H 1.07999 * 119.87989 * 359.57575 * 24 23 22 45 45 H 1.08003 * 119.82034 * 180.02562 * 25 24 23 46 46 H 1.07996 * 120.11599 * 180.17696 * 26 25 24 47 47 H 1.07994 * 120.01071 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1447 0.0018 13 8 0.8999 -7.2309 0.0018 14 6 1.5144 -8.5210 0.0018 15 6 0.4314 -9.6017 0.0025 16 7 -0.3271 -9.5337 -1.2491 17 6 -1.3383 -10.3964 -1.4720 18 8 -1.6207 -11.2287 -0.6362 19 6 -2.1189 -10.3261 -2.7591 20 1 -1.4735 -10.5229 -3.6152 21 6 -2.8261 -8.9575 -2.9028 22 8 -4.0702 -9.3067 -3.5333 23 6 -4.3991 -10.5853 -3.2012 24 6 -5.6280 -11.2375 -3.2690 25 6 -5.7360 -12.5577 -2.8843 26 6 -4.6267 -13.2454 -2.4277 27 6 -3.4033 -12.6035 -2.3530 28 6 -3.2940 -11.2842 -2.7334 29 1 -0.4850 0.8402 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6846 -3.7145 0.8905 32 1 2.6845 -3.7146 -0.8894 33 1 0.4366 -4.7621 -0.8886 34 1 0.4373 -4.7617 0.8914 35 1 2.4553 -6.2021 0.8918 36 1 2.4552 -6.2030 -0.8882 37 1 2.1345 -8.6281 -0.8881 38 1 2.1346 -8.6281 0.8918 39 1 0.8974 -10.5830 0.0920 40 1 -0.2418 -9.4410 0.8444 41 1 -0.1015 -8.8678 -1.9173 42 1 -3.0013 -8.5089 -1.9251 43 1 -2.2460 -8.2880 -3.5379 44 1 -6.4994 -10.7076 -3.6244 45 1 -6.6922 -13.0568 -2.9400 46 1 -4.7149 -14.2798 -2.1301 47 1 -2.5343 -13.1370 -1.9974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571353615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:50 Heat of formation + Delta-G solvation = -78.068129 kcal Electronic energy + Delta-G solvation = -27263.546520 eV Core-core repulsion = 23219.133409 eV Total energy + Delta-G solvation = -4044.413111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.76781 -39.65422 -38.24042 -37.70935 -35.53202 -34.80474 -33.26109 -32.36506 -30.62440 -30.27931 -29.66694 -28.73532 -25.16905 -24.61139 -23.34370 -22.62784 -22.56121 -22.10041 -20.90125 -20.63334 -17.90057 -17.79459 -17.19061 -17.04701 -16.87759 -16.56634 -16.01463 -15.74640 -15.53079 -15.38598 -14.69734 -14.36017 -14.26845 -14.15393 -13.72807 -13.69185 -13.48867 -13.29387 -13.06574 -13.05772 -12.90574 -12.40202 -12.24926 -12.01518 -11.75374 -11.36891 -11.28891 -11.12028 -10.94300 -10.80683 -10.73597 -10.65241 -10.22503 -10.08015 -9.73697 -9.71387 -9.45092 -9.19909 -8.89987 -8.48664 -6.95476 -5.78416 -3.07862 0.95178 1.10686 2.20828 2.70930 2.89963 3.41868 3.42325 3.46755 3.48767 3.49831 3.79207 4.11314 4.35614 4.52041 4.56016 4.61727 4.71029 4.77464 4.80674 5.01822 5.05846 5.07765 5.11276 5.15665 5.19523 5.22082 5.32084 5.34949 5.52527 5.54248 5.55227 5.70477 5.89882 5.98956 6.01946 6.04246 6.11497 6.20352 6.21656 6.27768 6.31551 6.76829 6.81485 6.84202 7.07838 7.09899 7.67358 7.81838 8.40209 9.51243 10.08733 10.43393 11.44443 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.001759 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.347749 B =15912.564427 C =17355.750876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.156 3.844 11 C -0.124 4.124 12 C 0.068 3.932 13 O -0.387 6.387 14 C 0.048 3.952 15 C 0.123 3.877 16 N -0.721 5.721 17 C 0.524 3.476 18 O -0.527 6.527 19 C -0.101 4.101 20 H 0.123 0.877 21 C 0.063 3.937 22 O -0.298 6.298 23 C 0.108 3.892 24 C -0.143 4.143 25 C -0.081 4.081 26 C -0.154 4.154 27 C -0.040 4.040 28 C -0.158 4.158 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.406 0.594 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 -29.363 -6.764 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.162 4.162 12 C -0.009 4.009 13 O -0.307 6.307 14 C -0.029 4.029 15 C -0.001 4.001 16 N -0.374 5.374 17 C 0.309 3.691 18 O -0.403 6.403 19 C -0.122 4.122 20 H 0.141 0.859 21 C -0.012 4.012 22 O -0.212 6.212 23 C 0.063 3.937 24 C -0.161 4.161 25 C -0.099 4.099 26 C -0.172 4.172 27 C -0.058 4.058 28 C -0.159 4.159 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.241 0.759 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.935 -29.633 -6.259 30.686 hybrid contribution 0.838 1.287 -0.201 1.549 sum -4.097 -28.346 -6.460 29.360 Atomic orbital electron populations 1.69667 1.05140 1.25729 1.57565 1.24769 0.95561 0.97779 1.02917 0.86163 0.78622 0.83704 0.77527 1.21677 1.21711 1.20746 1.19231 0.91052 0.84123 1.42955 0.91133 1.42331 1.05954 0.99894 1.89549 1.20511 0.93294 0.85482 0.97846 1.21672 0.99430 0.91794 1.03343 1.22519 0.91799 0.86413 1.00130 1.87923 1.33976 1.13304 1.95476 1.22711 0.94935 0.83820 1.01464 1.21429 0.93747 0.97769 0.87112 1.45937 1.34254 1.36096 1.21110 1.20060 0.79957 0.81171 0.87874 1.90723 1.66959 1.36528 1.46092 1.21555 0.96621 0.95853 0.98182 0.85886 1.23861 0.82709 0.94755 0.99902 1.86869 1.40179 1.27041 1.67097 1.19574 0.94124 0.84375 0.95609 1.20252 0.94607 0.95257 1.06032 1.20907 0.98971 0.93120 0.96923 1.21067 0.92568 1.00426 1.03158 1.20352 0.98145 0.92284 0.95038 1.20174 0.92924 0.95594 1.07200 0.93444 0.78177 0.96336 0.96343 0.91187 0.91146 0.93184 0.93254 0.92622 0.91498 0.89927 0.90316 0.75931 0.89608 0.86352 0.85301 0.85108 0.85429 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.78 5.60 -59.91 -0.34 -19.11 16 10 C 0.16 3.09 6.26 -4.04 -0.03 3.06 16 11 C -0.12 -1.98 5.70 -26.73 -0.15 -2.13 16 12 C 0.07 0.83 5.94 37.16 0.22 1.05 16 13 O -0.39 -4.46 10.29 -35.23 -0.36 -4.82 16 14 C 0.05 0.38 6.07 37.16 0.23 0.61 16 15 C 0.12 1.02 6.06 -4.04 -0.02 0.99 16 16 N -0.72 -5.86 5.45 -60.29 -0.33 -6.19 16 17 C 0.52 5.23 7.08 -10.99 -0.08 5.15 16 18 O -0.53 -7.08 15.01 5.56 0.08 -7.00 16 19 C -0.10 -0.85 3.52 -91.56 -0.32 -1.17 16 20 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 21 C 0.06 0.53 7.50 38.06 0.29 0.81 16 22 O -0.30 -3.26 11.10 -20.17 -0.22 -3.48 16 23 C 0.11 1.18 7.04 -38.96 -0.27 0.90 16 24 C -0.14 -1.33 10.06 -39.30 -0.40 -1.73 16 25 C -0.08 -0.64 10.02 -39.68 -0.40 -1.04 16 26 C -0.15 -1.28 10.07 -39.52 -0.40 -1.68 16 27 C -0.04 -0.40 9.05 -39.72 -0.36 -0.76 16 28 C -0.16 -1.65 5.44 -104.10 -0.57 -2.21 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.41 2.59 8.47 -40.82 -0.35 2.24 16 42 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 43 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 46 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.13 1.21 7.64 -52.49 -0.40 0.81 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -35.02 396.40 -9.36 -44.38 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.36 Total: 6.22 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.51 Total: -5.65 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.06 Total: -52.99 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.50 Total: -15.30 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.02 -9.36 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571353615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.692 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds