Wall clock time and date at job start Tue Mar 31 2020 22:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48504 * 109.47061 * 269.99710 * 3 2 1 5 5 H 1.48496 * 109.47316 * 30.00107 * 3 2 1 6 6 H 1.48499 * 109.47179 * 150.00165 * 3 2 1 7 7 C 1.38815 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99984 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.46728 * 180.02562 * 12 11 10 14 14 C 1.42899 * 113.99778 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46889 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46967 * 65.00094 * 15 14 13 17 17 C 1.34782 * 119.99886 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99651 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00035 * 179.97438 * 17 16 15 20 20 H 1.09001 * 110.83687 * 62.26845 * 19 17 16 21 21 C 1.54718 * 110.94144 * 298.54937 * 19 17 16 22 22 O 1.43772 * 102.79231 * 216.48562 * 21 19 17 23 23 C 1.36134 * 109.28393 * 27.55044 * 22 21 19 24 24 C 1.39285 * 129.87225 * 161.44727 * 23 22 21 25 25 C 1.37935 * 120.24220 * 179.55078 * 24 23 22 26 26 C 1.38280 * 120.35011 * 0.02562 * 25 24 23 27 27 C 1.38353 * 119.76767 * 0.19314 * 26 25 24 28 28 C 1.37741 * 119.97338 * 359.97438 * 27 26 25 29 29 H 0.97010 * 119.99657 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00485 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47175 * 59.99749 * 10 9 7 32 32 H 1.08996 * 109.47197 * 299.99991 * 10 9 7 33 33 H 1.09000 * 109.46866 * 59.99938 * 11 10 9 34 34 H 1.09001 * 109.46611 * 300.00055 * 11 10 9 35 35 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 36 36 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 37 37 H 1.08997 * 109.47171 * 299.99768 * 14 13 12 38 38 H 1.08997 * 109.47442 * 59.99964 * 14 13 12 39 39 H 1.09004 * 109.47113 * 184.99738 * 15 14 13 40 40 H 1.08993 * 109.47646 * 305.00069 * 15 14 13 41 41 H 0.96995 * 120.00166 * 359.97438 * 16 15 14 42 42 H 1.08990 * 110.74640 * 334.81243 * 21 19 17 43 43 H 1.08998 * 110.74394 * 98.16169 * 21 19 17 44 44 H 1.07999 * 119.87989 * 359.57575 * 24 23 22 45 45 H 1.08003 * 119.82034 * 180.02562 * 25 24 23 46 46 H 1.07996 * 120.11599 * 180.17696 * 26 25 24 47 47 H 1.07994 * 120.01071 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1447 0.0018 13 8 0.8999 -7.2309 0.0018 14 6 1.5144 -8.5210 0.0018 15 6 0.4314 -9.6017 0.0025 16 7 -0.3271 -9.5337 -1.2491 17 6 -1.3383 -10.3964 -1.4720 18 8 -1.6207 -11.2287 -0.6362 19 6 -2.1189 -10.3261 -2.7591 20 1 -1.4735 -10.5229 -3.6152 21 6 -2.8261 -8.9575 -2.9028 22 8 -4.0702 -9.3067 -3.5333 23 6 -4.3991 -10.5853 -3.2012 24 6 -5.6280 -11.2375 -3.2690 25 6 -5.7360 -12.5577 -2.8843 26 6 -4.6267 -13.2454 -2.4277 27 6 -3.4033 -12.6035 -2.3530 28 6 -3.2940 -11.2842 -2.7334 29 1 -0.4850 0.8402 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6846 -3.7145 0.8905 32 1 2.6845 -3.7146 -0.8894 33 1 0.4366 -4.7621 -0.8886 34 1 0.4373 -4.7617 0.8914 35 1 2.4553 -6.2021 0.8918 36 1 2.4552 -6.2030 -0.8882 37 1 2.1345 -8.6281 -0.8881 38 1 2.1346 -8.6281 0.8918 39 1 0.8974 -10.5830 0.0920 40 1 -0.2418 -9.4410 0.8444 41 1 -0.1015 -8.8678 -1.9173 42 1 -3.0013 -8.5089 -1.9251 43 1 -2.2460 -8.2880 -3.5379 44 1 -6.4994 -10.7076 -3.6244 45 1 -6.6922 -13.0568 -2.9400 46 1 -4.7149 -14.2798 -2.1301 47 1 -2.5343 -13.1370 -1.9974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571353615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:49 Heat of formation + Delta-G solvation = -102.682027 kcal Electronic energy + Delta-G solvation = -27264.613859 eV Core-core repulsion = 23219.133409 eV Total energy + Delta-G solvation = -4045.480450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.47267 -40.42748 -39.12266 -38.38425 -37.04478 -35.85117 -34.18213 -33.88766 -31.81628 -31.09766 -30.70358 -29.58521 -26.80583 -25.34185 -24.30736 -23.98647 -23.31245 -22.80336 -22.29282 -21.38309 -19.15409 -18.59048 -18.49292 -17.91529 -17.70739 -17.33001 -16.80435 -16.63687 -16.55744 -16.22208 -16.14584 -15.50046 -15.31937 -15.19244 -14.97790 -14.74027 -14.47180 -14.39808 -14.14882 -13.88378 -13.64816 -13.29955 -13.14842 -13.08244 -12.79706 -12.66146 -12.57736 -12.40162 -12.07485 -12.02244 -11.95426 -11.92441 -11.78971 -11.74813 -11.05229 -10.94532 -10.53892 -10.18996 -9.88456 -9.19270 -9.02712 -7.96525 -5.26455 0.27314 0.39822 1.44418 1.47692 1.49910 1.58441 2.02493 2.23336 2.50210 2.65748 2.78929 3.11623 3.37360 3.46606 3.71084 3.85877 3.87802 4.02518 4.07536 4.09776 4.20163 4.21145 4.37333 4.42576 4.43185 4.45210 4.49613 4.52767 4.54470 4.63170 4.67413 4.74236 4.77335 4.82075 4.88458 5.04536 5.31132 5.33303 5.34299 5.35635 5.43887 5.48664 5.54189 5.62054 6.15492 6.23043 6.27402 6.42600 7.10245 7.31497 8.07400 8.29743 9.27255 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.001759 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.347749 B =15912.564427 C =17355.750876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.154 3.846 11 C -0.114 4.114 12 C 0.078 3.922 13 O -0.406 6.406 14 C 0.049 3.951 15 C 0.123 3.877 16 N -0.711 5.711 17 C 0.525 3.475 18 O -0.567 6.567 19 C -0.094 4.094 20 H 0.149 0.851 21 C 0.062 3.938 22 O -0.315 6.315 23 C 0.081 3.919 24 C -0.154 4.154 25 C -0.080 4.080 26 C -0.155 4.155 27 C -0.058 4.058 28 C -0.175 4.175 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.024 0.976 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.416 0.584 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.161 0.839 46 H 0.151 0.849 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -30.302 -7.407 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.152 4.152 12 C 0.002 3.998 13 O -0.326 6.326 14 C -0.027 4.027 15 C 0.000 4.000 16 N -0.364 5.364 17 C 0.311 3.689 18 O -0.446 6.446 19 C -0.115 4.115 20 H 0.166 0.834 21 C -0.013 4.013 22 O -0.230 6.230 23 C 0.036 3.964 24 C -0.173 4.173 25 C -0.098 4.098 26 C -0.173 4.173 27 C -0.076 4.076 28 C -0.176 4.176 29 H 0.061 0.939 30 H 0.205 0.795 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.253 0.747 42 H 0.091 0.909 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.179 0.821 46 H 0.169 0.831 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.426 -30.590 -6.914 31.549 hybrid contribution 0.382 1.464 0.021 1.513 sum -3.044 -29.126 -6.893 30.085 Atomic orbital electron populations 1.69831 1.06759 1.26194 1.59375 1.25652 0.96461 1.01391 1.03557 0.85079 0.77682 0.79093 0.77528 1.21207 1.22239 1.19219 1.19685 0.91671 0.85294 1.41450 0.90281 1.42604 1.05724 1.01400 1.89559 1.20687 0.93885 0.84479 0.98193 1.21481 0.98590 0.92861 1.02271 1.22305 0.91170 0.84759 1.01593 1.87880 1.34621 1.14410 1.95727 1.22864 0.94807 0.81747 1.03281 1.21440 0.93526 0.98653 0.86375 1.45900 1.33558 1.35662 1.21255 1.20308 0.79999 0.80723 0.87905 1.90701 1.68167 1.38275 1.47424 1.21582 0.96341 0.95432 0.98180 0.83364 1.24018 0.82302 0.95100 0.99915 1.86833 1.41246 1.27306 1.67568 1.19894 0.94991 0.84598 0.96868 1.20604 0.94638 0.96057 1.05993 1.21279 1.00156 0.92592 0.95738 1.21420 0.92097 1.01532 1.02267 1.20525 0.98886 0.92451 0.95707 1.20456 0.93689 0.96102 1.07383 0.93948 0.79545 0.95789 0.95316 0.91874 0.92679 0.92143 0.91328 0.90326 0.90047 0.88704 0.92438 0.74710 0.90920 0.83486 0.84213 0.82105 0.83120 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.25 -13.98 9.99 84.04 0.84 -13.14 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.75 -38.47 5.60 -343.45 -1.92 -40.40 16 10 C 0.15 5.90 6.26 86.38 0.54 6.45 16 11 C -0.11 -3.52 5.70 30.60 0.17 -3.35 16 12 C 0.08 1.71 5.94 71.98 0.43 2.14 16 13 O -0.41 -8.52 10.29 -148.98 -1.53 -10.05 16 14 C 0.05 0.66 6.07 71.98 0.44 1.09 16 15 C 0.12 1.89 6.06 86.38 0.52 2.41 16 16 N -0.71 -10.72 5.45 -463.05 -2.52 -13.25 16 17 C 0.52 10.31 7.08 87.65 0.62 10.93 16 18 O -0.57 -15.49 15.01 -3.04 -0.05 -15.53 16 19 C -0.09 -1.55 3.52 -11.40 -0.04 -1.59 16 20 H 0.15 1.59 8.14 -2.39 -0.02 1.58 16 21 C 0.06 1.01 7.50 72.57 0.54 1.55 16 22 O -0.32 -6.96 11.10 -95.07 -1.06 -8.02 16 23 C 0.08 1.79 7.04 22.67 0.16 1.95 16 24 C -0.15 -2.83 10.06 22.45 0.23 -2.61 16 25 C -0.08 -1.17 10.02 22.21 0.22 -0.94 16 26 C -0.16 -2.44 10.07 22.31 0.22 -2.22 16 27 C -0.06 -1.14 9.05 22.18 0.20 -0.94 16 28 C -0.18 -3.69 5.44 -19.53 -0.11 -3.79 16 29 H 0.25 15.04 8.31 -92.70 -0.77 14.26 16 30 H 0.37 20.49 7.67 -92.71 -0.71 19.77 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.42 4.52 8.47 -92.71 -0.79 3.74 16 42 H 0.07 1.34 7.91 -2.39 -0.02 1.32 16 43 H 0.15 1.43 8.14 -2.39 -0.02 1.42 16 44 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 46 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 47 H 0.12 2.43 7.64 -2.91 -0.02 2.41 16 Total: -1.00 -76.41 396.40 0.18 -76.24 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.51 Total: 28.89 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.46 Total: -6.13 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -4.17 Total: -113.37 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -2.63 Total: -33.60 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.41 0.18 -76.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571353615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.445 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds