Wall clock time and date at job start Tue Mar 31 2020 20:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38411 * 126.37017 * 2 1 4 4 C 1.38714 * 133.89653 * 0.02562 * 3 2 1 5 5 C 1.38105 * 119.83154 * 179.97438 * 4 3 2 6 6 F 1.35109 * 119.80734 * 179.97438 * 5 4 3 7 7 C 1.38918 * 120.39027 * 0.03305 * 5 4 3 8 8 C 1.37650 * 120.47725 * 359.97438 * 7 5 4 9 9 C 1.39720 * 119.81111 * 0.02562 * 8 7 5 10 10 N 1.35928 * 133.38523 * 180.30275 * 9 8 7 11 11 C 1.30816 * 109.61703 * 180.11211 * 10 9 8 12 12 N 1.38502 * 125.05212 * 179.86910 * 11 10 9 13 13 C 1.34769 * 119.99819 * 359.69176 * 12 11 10 14 14 O 1.21269 * 120.00106 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99927 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.47152 * 319.99914 * 15 13 12 17 17 N 1.46896 * 109.46997 * 199.99852 * 15 13 12 18 18 C 1.53000 * 109.46912 * 80.00142 * 15 13 12 19 19 C 1.53006 * 109.46846 * 185.00257 * 18 15 13 20 20 C 1.53000 * 109.46846 * 179.97438 * 19 18 15 21 21 C 1.50703 * 109.46801 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99885 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99680 * 179.97438 * 21 20 19 24 24 N 1.31523 * 119.99583 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00273 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47042 * 89.99722 * 25 23 21 27 27 H 1.48498 * 109.47140 * 210.00135 * 25 23 21 28 28 H 1.48503 * 109.46850 * 329.99918 * 25 23 21 29 29 H 1.08998 * 109.47221 * 270.00047 * 1 2 3 30 30 H 1.09004 * 109.46995 * 29.99687 * 1 2 3 31 31 H 1.09000 * 109.46910 * 149.99470 * 1 2 3 32 32 H 1.08009 * 120.08304 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.76395 * 179.97438 * 7 5 4 34 34 H 1.08004 * 120.09737 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99764 * 179.69462 * 12 11 10 36 36 H 1.00900 * 111.00550 * 300.00040 * 17 15 13 37 37 H 1.00896 * 111.00310 * 63.95626 * 17 15 13 38 38 H 1.09002 * 109.47069 * 304.99691 * 18 15 13 39 39 H 1.08991 * 109.47625 * 65.00010 * 18 15 13 40 40 H 1.09002 * 109.46824 * 299.99583 * 19 18 15 41 41 H 1.09001 * 109.47241 * 59.99481 * 19 18 15 42 42 H 1.09002 * 109.47069 * 299.99434 * 20 19 18 43 43 H 1.09001 * 109.47624 * 59.99715 * 20 19 18 44 44 H 0.97001 * 119.99531 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2858 1.1145 0.0000 4 6 2.0513 2.4817 0.0004 5 6 3.1159 3.3613 0.0008 6 9 2.8869 4.6929 0.0007 7 6 4.4210 2.8852 0.0001 8 6 4.6702 1.5314 -0.0005 9 6 3.6037 0.6288 -0.0009 10 7 3.5292 -0.7284 0.0037 11 6 2.2748 -1.0994 -0.0017 12 7 1.8335 -2.4123 -0.0018 13 6 2.7252 -3.4228 -0.0023 14 8 3.9139 -3.1826 -0.0023 15 6 2.2452 -4.8514 -0.0030 16 1 1.3832 -4.9453 0.6575 17 7 3.3229 -5.7303 0.4701 18 6 1.8452 -5.2542 -1.4238 19 6 1.2418 -6.6601 -1.4045 20 6 0.8413 -7.0628 -2.8252 21 6 0.2474 -8.4477 -2.8062 22 1 0.1637 -8.9866 -1.8740 23 6 -0.1899 -9.0264 -3.9788 24 7 -0.7086 -10.2349 -3.9621 25 14 -0.0457 -8.0940 -5.5910 26 1 1.2645 -8.3956 -6.2217 27 1 -1.1415 -8.5096 -6.5029 28 1 -0.1453 -6.6355 -5.3299 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.0386 2.8573 0.0013 33 1 5.2459 3.5821 0.0000 34 1 5.6872 1.1680 -0.0007 35 1 0.8828 -2.6044 -0.0015 36 1 4.1339 -5.6613 -0.1261 37 1 3.5609 -5.5266 1.4292 38 1 1.1091 -4.5482 -1.8081 39 1 2.7262 -5.2458 -2.0655 40 1 1.9779 -7.3662 -1.0202 41 1 0.3607 -6.6685 -0.7627 42 1 0.1049 -6.3566 -3.2090 43 1 1.7220 -7.0542 -3.4673 44 1 -1.0166 -10.6418 -4.7870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579948082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:12 Heat of formation + Delta-G solvation = -1.540061 kcal Electronic energy + Delta-G solvation = -27514.858526 eV Core-core repulsion = 23382.596367 eV Total energy + Delta-G solvation = -4132.262159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.21576 -42.65500 -40.29481 -37.61615 -36.01426 -34.94123 -34.59751 -33.42870 -31.62172 -31.00909 -29.10632 -28.31606 -27.53065 -25.86216 -23.66572 -22.78236 -22.34678 -21.12002 -20.31623 -20.11708 -18.75105 -18.11051 -17.46920 -16.85459 -16.65951 -16.62279 -16.37299 -15.96978 -15.79890 -15.44202 -15.07095 -14.76358 -14.44187 -14.34821 -14.08599 -13.66606 -13.47310 -13.40569 -13.27836 -13.19585 -12.66518 -12.22444 -12.00005 -11.85305 -11.84548 -11.47761 -10.96116 -10.91580 -10.78712 -10.66121 -10.41608 -10.06761 -9.94408 -9.71495 -9.56695 -9.19119 -8.84951 -8.74629 -8.53202 -8.12545 -6.03706 -4.01205 0.41823 0.93904 1.56992 1.94551 2.62130 2.68153 3.30141 3.37530 3.38531 3.39879 3.71542 3.91113 4.11284 4.20586 4.39604 4.44984 4.51517 4.57926 4.70100 4.75274 4.83885 4.89597 4.90450 5.11296 5.26861 5.30324 5.41341 5.61167 5.65828 5.69003 5.80164 5.85848 6.07341 6.16573 6.31941 6.55693 6.62969 6.64457 6.68750 6.92952 6.95521 7.30260 7.35936 7.46764 7.54690 7.79540 7.80695 8.55588 9.02529 9.59139 11.09825 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.002121 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.541426 B =13200.624166 C =13856.411303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.506 5.506 3 C 0.071 3.929 4 C -0.142 4.142 5 C 0.107 3.893 6 F -0.137 7.137 7 C -0.156 4.156 8 C -0.037 4.037 9 C 0.057 3.943 10 N -0.471 5.471 11 C 0.511 3.489 12 N -0.641 5.641 13 C 0.481 3.519 14 O -0.471 6.471 15 C 0.088 3.912 16 H 0.108 0.892 17 N -0.807 5.807 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.016 4.016 21 C -0.517 4.517 22 H 0.072 0.928 23 C 0.064 3.936 24 N -0.904 5.904 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.267 1.267 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.420 0.580 36 H 0.354 0.646 37 H 0.343 0.657 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.011 0.989 43 H 0.010 0.990 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 27.598 11.300 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.203 5.203 3 C -0.038 4.038 4 C -0.164 4.164 5 C 0.086 3.914 6 F -0.115 7.115 7 C -0.177 4.177 8 C -0.057 4.057 9 C -0.062 4.062 10 N -0.198 5.198 11 C 0.157 3.843 12 N -0.295 5.295 13 C 0.265 3.735 14 O -0.338 6.338 15 C -0.029 4.029 16 H 0.126 0.874 17 N -0.335 5.335 18 C -0.148 4.148 19 C -0.130 4.130 20 C -0.054 4.054 21 C -0.555 4.555 22 H 0.090 0.910 23 C -0.137 4.137 24 N -0.544 5.544 25 Si 0.708 3.292 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.192 1.192 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.257 0.743 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.028 0.972 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.727 26.390 11.057 29.001 hybrid contribution -1.000 1.999 -0.855 2.394 sum 3.727 28.390 10.202 30.396 Atomic orbital electron populations 1.22072 0.75697 1.05220 1.03917 1.45001 1.07005 1.03984 1.64348 1.18142 0.90952 0.88026 1.06631 1.19571 0.99326 0.88979 1.08525 1.17062 0.93239 0.77023 1.04033 1.91508 1.95476 1.30521 1.94042 1.20856 0.95373 0.95816 1.05636 1.20103 0.98124 0.90150 0.97283 1.19073 0.91963 0.90142 1.04984 1.71111 1.13476 1.09636 1.25533 1.19776 0.85163 0.81808 0.97578 1.43177 1.12026 1.00416 1.73858 1.23153 0.86783 0.88294 0.75295 1.90834 1.15569 1.83953 1.43410 1.21812 0.96894 0.83124 1.01059 0.87440 1.59054 1.13540 1.53279 1.07664 1.21750 1.01176 1.00361 0.91470 1.21380 0.99653 0.92550 0.99405 1.19607 0.95830 0.97180 0.92740 1.21157 1.39598 0.99101 0.95671 0.90957 1.25056 0.94813 0.94748 0.99056 1.69924 1.42164 1.14569 1.27705 0.86780 0.77817 0.80778 0.83858 1.20332 1.21501 1.19182 0.90213 0.89022 0.89338 0.84837 0.83937 0.84003 0.74283 0.83169 0.84468 0.91874 0.91505 0.91042 0.92887 0.97034 0.97191 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.96 59.85 0.66 0.98 16 2 N -0.51 -4.65 3.23 -122.34 -0.40 -5.05 16 3 C 0.07 0.75 6.87 -83.88 -0.58 0.17 16 4 C -0.14 -1.24 10.01 -39.45 -0.40 -1.63 16 5 C 0.11 0.96 7.29 -39.38 -0.29 0.67 16 6 F -0.14 -1.25 17.26 2.25 0.04 -1.21 16 7 C -0.16 -1.30 9.99 -39.54 -0.40 -1.69 16 8 C -0.04 -0.37 10.10 -39.24 -0.40 -0.76 16 9 C 0.06 0.72 7.22 -84.66 -0.61 0.11 16 10 N -0.47 -6.92 9.37 -11.39 -0.11 -7.02 16 11 C 0.51 6.05 8.38 -319.36 -2.68 3.38 16 12 N -0.64 -6.23 5.38 -12.58 -0.07 -6.30 16 13 C 0.48 5.80 7.03 -10.99 -0.08 5.72 16 14 O -0.47 -7.45 14.87 5.57 0.08 -7.36 16 15 C 0.09 0.98 3.15 -68.87 -0.22 0.76 16 16 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 17 N -0.81 -9.46 8.44 -5.65 -0.05 -9.50 16 18 C -0.11 -1.50 4.84 -26.73 -0.13 -1.63 16 19 C -0.09 -1.66 5.04 -26.73 -0.13 -1.79 16 20 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 21 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 22 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 23 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 24 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 25 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.25 7.45 -51.93 -0.39 -0.14 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 35 H 0.42 2.48 7.86 -40.82 -0.32 2.16 16 36 H 0.35 4.36 8.58 -39.29 -0.34 4.02 16 37 H 0.34 3.46 9.06 -39.29 -0.36 3.10 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.37 7.75 -51.93 -0.40 0.96 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.01 0.26 7.20 -51.93 -0.37 -0.12 16 43 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -36.40 375.58 -10.47 -46.87 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.96 Total: 3.27 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -5.78 Total: -9.28 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.16 Total: -54.84 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.08 Total: -7.36 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.40 -10.47 -46.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579948082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.334 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds