Wall clock time and date at job start Tue Mar 31 2020 20:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38411 * 126.37017 * 2 1 4 4 C 1.38714 * 133.89653 * 0.02562 * 3 2 1 5 5 C 1.38105 * 119.83154 * 179.97438 * 4 3 2 6 6 F 1.35109 * 119.80734 * 179.97438 * 5 4 3 7 7 C 1.38918 * 120.39027 * 0.03305 * 5 4 3 8 8 C 1.37650 * 120.47725 * 359.97438 * 7 5 4 9 9 C 1.39720 * 119.81111 * 0.02562 * 8 7 5 10 10 N 1.35928 * 133.38523 * 180.30275 * 9 8 7 11 11 C 1.30816 * 109.61703 * 180.11211 * 10 9 8 12 12 N 1.38502 * 125.05212 * 179.86910 * 11 10 9 13 13 C 1.34769 * 119.99819 * 359.69176 * 12 11 10 14 14 O 1.21269 * 120.00106 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99927 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.47152 * 319.99914 * 15 13 12 17 17 N 1.46896 * 109.46997 * 199.99852 * 15 13 12 18 18 C 1.53000 * 109.46912 * 80.00142 * 15 13 12 19 19 C 1.53006 * 109.46846 * 185.00257 * 18 15 13 20 20 C 1.53000 * 109.46846 * 179.97438 * 19 18 15 21 21 C 1.50703 * 109.46801 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99885 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99680 * 179.97438 * 21 20 19 24 24 N 1.31523 * 119.99583 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00273 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47042 * 89.99722 * 25 23 21 27 27 H 1.48498 * 109.47140 * 210.00135 * 25 23 21 28 28 H 1.48503 * 109.46850 * 329.99918 * 25 23 21 29 29 H 1.08998 * 109.47221 * 270.00047 * 1 2 3 30 30 H 1.09004 * 109.46995 * 29.99687 * 1 2 3 31 31 H 1.09000 * 109.46910 * 149.99470 * 1 2 3 32 32 H 1.08009 * 120.08304 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.76395 * 179.97438 * 7 5 4 34 34 H 1.08004 * 120.09737 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99764 * 179.69462 * 12 11 10 36 36 H 1.00900 * 111.00550 * 300.00040 * 17 15 13 37 37 H 1.00896 * 111.00310 * 63.95626 * 17 15 13 38 38 H 1.09002 * 109.47069 * 304.99691 * 18 15 13 39 39 H 1.08991 * 109.47625 * 65.00010 * 18 15 13 40 40 H 1.09002 * 109.46824 * 299.99583 * 19 18 15 41 41 H 1.09001 * 109.47241 * 59.99481 * 19 18 15 42 42 H 1.09002 * 109.47069 * 299.99434 * 20 19 18 43 43 H 1.09001 * 109.47624 * 59.99715 * 20 19 18 44 44 H 0.97001 * 119.99531 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2858 1.1145 0.0000 4 6 2.0513 2.4817 0.0004 5 6 3.1159 3.3613 0.0008 6 9 2.8869 4.6929 0.0007 7 6 4.4210 2.8852 0.0001 8 6 4.6702 1.5314 -0.0005 9 6 3.6037 0.6288 -0.0009 10 7 3.5292 -0.7284 0.0037 11 6 2.2748 -1.0994 -0.0017 12 7 1.8335 -2.4123 -0.0018 13 6 2.7252 -3.4228 -0.0023 14 8 3.9139 -3.1826 -0.0023 15 6 2.2452 -4.8514 -0.0030 16 1 1.3832 -4.9453 0.6575 17 7 3.3229 -5.7303 0.4701 18 6 1.8452 -5.2542 -1.4238 19 6 1.2418 -6.6601 -1.4045 20 6 0.8413 -7.0628 -2.8252 21 6 0.2474 -8.4477 -2.8062 22 1 0.1637 -8.9866 -1.8740 23 6 -0.1899 -9.0264 -3.9788 24 7 -0.7086 -10.2349 -3.9621 25 14 -0.0457 -8.0940 -5.5910 26 1 1.2645 -8.3956 -6.2217 27 1 -1.1415 -8.5096 -6.5029 28 1 -0.1453 -6.6355 -5.3299 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.0386 2.8573 0.0013 33 1 5.2459 3.5821 0.0000 34 1 5.6872 1.1680 -0.0007 35 1 0.8828 -2.6044 -0.0015 36 1 4.1339 -5.6613 -0.1261 37 1 3.5609 -5.5266 1.4292 38 1 1.1091 -4.5482 -1.8081 39 1 2.7262 -5.2458 -2.0655 40 1 1.9779 -7.3662 -1.0202 41 1 0.3607 -6.6685 -0.7627 42 1 0.1049 -6.3566 -3.2090 43 1 1.7220 -7.0542 -3.4673 44 1 -1.0166 -10.6418 -4.7870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579948082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:11 Heat of formation + Delta-G solvation = -25.269045 kcal Electronic energy + Delta-G solvation = -27515.887492 eV Core-core repulsion = 23382.596367 eV Total energy + Delta-G solvation = -4133.291125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.90933 -43.39908 -41.21551 -38.34715 -37.20447 -35.78708 -35.34273 -35.14364 -33.35483 -31.65837 -30.13028 -29.51415 -28.03305 -27.12699 -24.84990 -23.54611 -23.43032 -22.04711 -21.63008 -21.16023 -19.52577 -18.85337 -18.78406 -18.29414 -17.49521 -17.41194 -17.21490 -16.84935 -16.50972 -16.29300 -16.10934 -15.96901 -15.62077 -15.43348 -15.08603 -14.79682 -14.43226 -14.18204 -14.16599 -14.03301 -13.76106 -13.54983 -13.33167 -13.00146 -12.83454 -12.52925 -12.40016 -12.36434 -11.82064 -11.68958 -11.56192 -11.38998 -11.24304 -11.21025 -11.19228 -10.86426 -10.71663 -9.81684 -9.40639 -8.91880 -8.24796 -6.27650 -0.31985 0.24459 0.84295 1.07804 1.38580 1.39058 1.50873 1.86193 1.96841 2.39167 2.62928 3.01620 3.10889 3.18770 3.40001 3.58825 3.67116 3.82102 3.94733 4.04229 4.10924 4.13199 4.30967 4.32036 4.48377 4.56782 4.60179 4.63149 4.72952 4.89414 4.95633 5.01335 5.08233 5.11783 5.14255 5.23069 5.36762 5.63517 5.68499 5.73503 5.79521 5.89083 5.93702 6.08750 6.35720 6.42841 6.71821 6.81746 7.00470 7.36608 8.92053 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.002121 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.541426 B =13200.624166 C =13856.411303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.497 5.497 3 C 0.064 3.936 4 C -0.136 4.136 5 C 0.102 3.898 6 F -0.137 7.137 7 C -0.146 4.146 8 C -0.051 4.051 9 C 0.022 3.978 10 N -0.521 5.521 11 C 0.497 3.503 12 N -0.624 5.624 13 C 0.488 3.512 14 O -0.512 6.512 15 C 0.099 3.901 16 H 0.137 0.863 17 N -0.816 5.816 18 C -0.100 4.100 19 C -0.082 4.082 20 C -0.016 4.016 21 C -0.526 4.526 22 H 0.032 0.968 23 C -0.001 4.001 24 N -0.954 5.954 25 Si 0.950 3.050 26 H -0.273 1.273 27 H -0.286 1.286 28 H -0.242 1.242 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.438 0.562 36 H 0.349 0.651 37 H 0.351 0.649 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.009 0.991 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 30.525 10.979 32.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.193 5.193 3 C -0.046 4.046 4 C -0.157 4.157 5 C 0.081 3.919 6 F -0.115 7.115 7 C -0.167 4.167 8 C -0.070 4.070 9 C -0.096 4.096 10 N -0.249 5.249 11 C 0.142 3.858 12 N -0.280 5.280 13 C 0.272 3.728 14 O -0.382 6.382 15 C -0.018 4.018 16 H 0.154 0.846 17 N -0.345 5.345 18 C -0.138 4.138 19 C -0.120 4.120 20 C -0.054 4.054 21 C -0.564 4.564 22 H 0.051 0.949 23 C -0.197 4.197 24 N -0.595 5.595 25 Si 0.774 3.226 26 H -0.199 1.199 27 H -0.212 1.212 28 H -0.165 1.165 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.177 0.823 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.279 0.721 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.028 0.972 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.536 29.349 10.763 31.460 hybrid contribution -0.671 1.085 -0.667 1.440 sum 2.865 30.435 10.096 32.193 Atomic orbital electron populations 1.22505 0.72790 1.06996 1.05642 1.45148 1.08442 1.02656 1.63061 1.18323 0.90534 0.88894 1.06802 1.19783 1.00554 0.88124 1.07282 1.17202 0.93623 0.77070 1.04020 1.91511 1.95488 1.30490 1.94046 1.21081 0.96119 0.95450 1.04046 1.20274 0.98092 0.90663 0.98006 1.19478 0.93751 0.89935 1.06470 1.70976 1.15720 1.11128 1.27043 1.19819 0.85281 0.82770 0.97886 1.42937 1.12731 0.99436 1.72884 1.23178 0.86327 0.88805 0.74468 1.90827 1.17432 1.84533 1.45410 1.21730 0.97576 0.82390 1.00070 0.84569 1.59089 1.13617 1.53516 1.08280 1.21574 1.01031 0.98088 0.93113 1.21176 0.99667 0.94782 0.96359 1.19601 0.95585 0.94276 0.95912 1.21566 1.39336 1.01367 0.94174 0.94940 1.26060 0.94555 0.95698 1.03434 1.70087 1.43870 1.16665 1.28904 0.85658 0.77836 0.80552 0.78550 1.19868 1.21203 1.16505 0.88485 0.87468 0.87473 0.82322 0.81555 0.83656 0.72070 0.83732 0.83473 0.89533 0.92659 0.92772 0.92263 0.95827 0.97223 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.96 127.77 1.40 1.73 16 2 N -0.50 -8.14 3.23 -540.97 -1.75 -9.88 16 3 C 0.06 1.25 6.87 38.76 0.27 1.52 16 4 C -0.14 -2.07 10.01 22.35 0.22 -1.85 16 5 C 0.10 1.64 7.29 22.40 0.16 1.80 16 6 F -0.14 -2.21 17.26 44.97 0.78 -1.43 16 7 C -0.15 -2.25 9.99 22.29 0.22 -2.03 16 8 C -0.05 -1.01 10.10 22.49 0.23 -0.78 16 9 C 0.02 0.56 7.22 39.41 0.28 0.84 16 10 N -0.52 -15.42 9.37 -189.96 -1.78 -17.20 16 11 C 0.50 11.22 8.38 260.28 2.18 13.40 16 12 N -0.62 -10.87 5.38 -312.12 -1.68 -12.55 16 13 C 0.49 11.09 7.03 87.66 0.62 11.71 16 14 O -0.51 -16.21 14.87 -2.99 -0.04 -16.25 16 15 C 0.10 2.00 3.15 44.17 0.14 2.14 16 16 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 17 N -0.82 -18.42 8.44 -171.80 -1.45 -19.87 16 18 C -0.10 -2.52 4.84 30.60 0.15 -2.37 16 19 C -0.08 -2.84 5.04 30.60 0.15 -2.68 16 20 C -0.02 -0.72 4.04 29.85 0.12 -0.60 16 21 C -0.53 -29.83 9.66 25.60 0.25 -29.58 16 22 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 23 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 24 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 25 Si 0.95 43.85 27.47 68.60 1.88 45.73 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 27 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 28 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 29 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.11 0.18 7.45 -2.39 -0.02 0.16 16 32 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.44 3.75 7.86 -92.71 -0.73 3.02 16 36 H 0.35 8.55 8.58 -89.69 -0.77 7.78 16 37 H 0.35 6.80 9.06 -89.70 -0.81 5.99 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 2.05 7.75 -2.39 -0.02 2.03 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 43 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -82.06 375.58 1.82 -80.24 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -1.30 Total: 17.10 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 6.86 Total: -6.37 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -6.35 Total: -119.02 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.04 Total: -16.25 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -82.06 1.82 -80.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579948082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.975 kcal (2) G-P(sol) polarization free energy of solvation -82.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds