Wall clock time and date at job start Tue Mar 31 2020 23:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86792 * 120.00335 * 2 1 4 4 H 1.48499 * 109.47243 * 269.99961 * 3 2 1 5 5 H 1.48497 * 109.47097 * 30.00117 * 3 2 1 6 6 H 1.48506 * 109.47195 * 149.99969 * 3 2 1 7 7 C 1.38659 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 0.02562 * 7 2 1 9 9 O 1.34826 * 120.00206 * 180.02562 * 7 2 1 10 10 C 1.35752 * 117.00398 * 185.06323 * 9 7 2 11 11 C 1.38876 * 120.06336 * 354.46177 * 10 9 7 12 12 C 1.38103 * 119.93201 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06385 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92950 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47088 * 90.00093 * 14 13 12 16 16 O 1.21280 * 120.00211 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99846 * 180.02562 * 15 14 13 18 18 C 1.47505 * 118.75920 * 359.97438 * 17 15 14 19 19 C 1.53578 * 111.02843 * 221.62501 * 18 17 15 20 20 C 1.51544 * 109.57542 * 39.97750 * 19 18 17 21 21 O 1.42158 * 108.75865 * 268.59832 * 20 19 18 22 22 C 1.38015 * 119.43632 * 87.22704 * 21 20 19 23 23 H 1.09005 * 109.46643 * 56.57719 * 22 21 20 24 24 C 1.52997 * 109.46760 * 176.56786 * 22 21 20 25 25 N 1.46900 * 109.47232 * 300.00045 * 24 22 21 26 26 C 1.45125 * 118.75659 * 179.97438 * 17 15 14 27 27 C 1.38300 * 120.14099 * 0.24770 * 13 12 11 28 28 C 1.38099 * 120.06753 * 359.45515 * 27 13 12 29 29 H 0.97000 * 119.99902 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03680 * 0.04510 * 11 10 9 31 31 H 1.07992 * 119.97200 * 179.97438 * 12 11 10 32 32 H 1.08996 * 109.47509 * 329.99743 * 14 13 12 33 33 H 1.09000 * 109.46854 * 209.99477 * 14 13 12 34 34 H 1.08998 * 109.17182 * 101.22550 * 18 17 15 35 35 H 1.09005 * 109.16596 * 342.02124 * 18 17 15 36 36 H 1.08993 * 109.45315 * 279.94748 * 19 18 17 37 37 H 1.09000 * 109.45509 * 160.00524 * 19 18 17 38 38 H 1.08998 * 109.58152 * 148.82011 * 20 19 18 39 39 H 1.08996 * 109.70844 * 28.45660 * 20 19 18 40 40 H 1.08996 * 109.47475 * 60.00381 * 24 22 21 41 41 H 1.09004 * 109.46777 * 180.02562 * 24 22 21 42 42 H 1.00901 * 111.00325 * 180.02562 * 25 24 22 43 43 H 1.00899 * 111.00138 * 303.95470 * 25 24 22 44 44 H 1.08999 * 109.46113 * 330.69180 * 26 17 15 45 45 H 1.08993 * 109.46054 * 210.72938 * 26 17 15 46 46 H 1.08003 * 119.96755 * 179.70627 * 27 13 12 47 47 H 1.07998 * 120.03782 * 180.26616 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0463 -1.4000 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1361 0.0005 9 8 3.3570 -1.2010 0.0011 10 6 3.9733 -2.4059 -0.1052 11 6 3.2232 -3.5745 -0.0923 12 6 3.8531 -4.7989 -0.2000 13 6 5.2294 -4.8618 -0.3201 14 6 5.9136 -6.1994 -0.4369 15 6 6.0212 -6.5835 -1.8902 16 8 5.5847 -5.8441 -2.7467 17 7 6.6014 -7.7492 -2.2379 18 6 7.1223 -8.6279 -1.1739 19 6 8.4802 -9.2267 -1.5692 20 6 9.3142 -8.1742 -2.2714 21 8 9.0768 -8.2613 -3.6703 22 6 8.0239 -7.5619 -4.2245 23 1 8.1269 -6.5028 -3.9884 24 6 8.0307 -7.7488 -5.7430 25 7 9.2964 -7.2452 -6.2928 26 6 6.6901 -8.0924 -3.6452 27 6 5.9797 -3.7000 -0.3275 28 6 5.3552 -2.4724 -0.2264 29 1 -0.4850 0.8400 0.0004 30 1 2.1484 -3.5260 0.0015 31 1 3.2704 -5.7081 -0.1897 32 1 5.3329 -6.9524 0.0959 33 1 6.9116 -6.1361 -0.0031 34 1 6.4125 -9.4360 -0.9976 35 1 7.2395 -8.0494 -0.2574 36 1 8.3230 -10.0718 -2.2392 37 1 9.0020 -9.5655 -0.6741 38 1 10.3706 -8.3497 -2.0683 39 1 9.0330 -7.1836 -1.9140 40 1 7.9278 -8.8079 -5.9793 41 1 7.1993 -7.1961 -6.1808 42 1 9.3253 -7.3571 -7.2952 43 1 9.4459 -6.2819 -6.0323 44 1 5.8560 -7.6410 -4.1824 45 1 6.6507 -9.1758 -3.7579 46 1 7.0548 -3.7526 -0.4167 47 1 5.9412 -1.5653 -0.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:10 Heat of formation + Delta-G solvation = -70.287547 kcal Electronic energy + Delta-G solvation = -28864.033302 eV Core-core repulsion = 24819.957582 eV Total energy + Delta-G solvation = -4044.075720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.71 seconds Orbital eigenvalues (eV) -40.82279 -39.30477 -38.61916 -36.68389 -35.87353 -34.95278 -32.67302 -32.45193 -31.68532 -30.23457 -29.33479 -27.27754 -26.55946 -25.13824 -24.16281 -22.15054 -22.07347 -21.59594 -20.70293 -19.07029 -17.88031 -17.56420 -17.25274 -17.03749 -16.70063 -16.62917 -15.57820 -15.08845 -14.95614 -14.75658 -14.44592 -14.40870 -14.07869 -13.84233 -13.72634 -13.65402 -13.43161 -13.28130 -12.95354 -12.70516 -12.59249 -12.30374 -12.19909 -11.96244 -11.76722 -11.66553 -11.40620 -11.28773 -10.92396 -10.75368 -10.72176 -10.66462 -10.14486 -9.85074 -9.74818 -9.37087 -8.97777 -8.84666 -8.78827 -8.22768 -7.29690 -6.40302 -4.06660 2.15017 2.16709 2.62520 2.82304 3.22951 3.27068 3.36906 3.41310 4.14663 4.25037 4.32167 4.40348 4.50493 4.64640 4.70453 4.83356 4.86783 4.89972 4.93598 5.07048 5.08738 5.11986 5.16736 5.19175 5.26206 5.34944 5.37917 5.46483 5.57663 5.60655 5.65669 5.72161 5.74480 5.75226 6.14123 6.33744 6.36409 6.57141 6.77248 6.80322 7.01595 7.11339 7.15601 7.23071 7.31712 7.43748 7.62792 7.81854 8.05433 8.17948 8.95096 9.57773 10.67460 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.002393 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.814270 B =11698.255847 C =12252.448795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.162 4.162 14 C -0.081 4.081 15 C 0.506 3.494 16 O -0.516 6.516 17 N -0.620 5.620 18 C 0.104 3.896 19 C -0.167 4.167 20 C 0.074 3.926 21 O -0.370 6.370 22 C 0.095 3.905 23 H 0.050 0.950 24 C 0.073 3.927 25 N -0.842 5.842 26 C 0.082 3.918 27 C -0.062 4.062 28 C -0.191 4.191 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.341 0.659 43 H 0.341 0.659 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.107 -19.963 -4.564 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.076 4.076 13 C -0.164 4.164 14 C -0.121 4.121 15 C 0.294 3.706 16 O -0.390 6.390 17 N -0.356 5.356 18 C -0.019 4.019 19 C -0.205 4.205 20 C -0.002 4.002 21 O -0.288 6.288 22 C 0.034 3.966 23 H 0.068 0.932 24 C -0.059 4.059 25 N -0.371 5.371 26 C -0.043 4.043 27 C -0.080 4.080 28 C -0.210 4.210 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.171 -19.866 -4.658 27.324 hybrid contribution -0.769 1.355 -0.286 1.584 sum 17.403 -18.511 -4.944 25.884 Atomic orbital electron populations 1.69647 1.05570 1.28462 1.48151 1.24467 0.95029 0.98825 0.95699 0.86177 0.80314 0.81415 0.78974 1.19887 1.20793 1.18354 1.20775 0.76909 0.96637 1.52124 0.87637 1.83568 1.22612 1.25776 1.80308 1.19114 0.91696 0.85477 0.92694 1.21223 1.01048 0.91789 1.09735 1.20555 0.93223 0.96722 0.97091 1.18708 0.93590 0.92508 1.11557 1.20489 1.01975 0.97055 0.92542 1.21153 0.76942 0.80217 0.92258 1.90740 1.46184 1.49993 1.52059 1.47980 1.60303 1.20981 1.06307 1.22003 0.95231 0.94351 0.90270 1.22497 0.95744 1.00149 1.02102 1.22153 0.99307 0.97899 0.80884 1.86347 1.49732 1.70523 1.22167 1.21981 0.86500 0.95304 0.92786 0.93193 1.21722 0.90902 1.01245 0.92021 1.58582 1.35543 1.26406 1.16574 1.22244 0.99087 1.00959 0.81992 1.20380 0.98048 0.91393 0.98211 1.20142 0.91967 0.97707 1.11176 0.91072 0.84954 0.87585 0.88870 0.88992 0.91404 0.89416 0.90178 0.89471 0.89194 0.93098 0.90195 0.93694 0.84637 0.84717 0.89076 0.90115 0.87338 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.96 55.48 0.77 -25.00 16 2 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 3 Si 0.91 22.01 28.62 -169.99 -4.86 17.15 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.39 -11.17 9.95 30.89 0.31 -10.87 16 8 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 9 O -0.22 -5.88 8.59 0.05 0.00 -5.88 16 10 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 11 C -0.22 -4.88 9.17 -39.39 -0.36 -5.24 16 12 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 13 C -0.16 -2.73 4.38 -104.57 -0.46 -3.19 16 14 C -0.08 -0.98 4.17 -29.03 -0.12 -1.10 16 15 C 0.51 6.86 7.62 -10.98 -0.08 6.78 16 16 O -0.52 -9.41 15.46 5.56 0.09 -9.33 16 17 N -0.62 -6.32 2.19 -172.48 -0.38 -6.70 16 18 C 0.10 0.70 6.00 -3.19 -0.02 0.68 16 19 C -0.17 -0.98 5.79 -27.17 -0.16 -1.13 16 20 C 0.07 0.58 6.37 36.42 0.23 0.81 16 21 O -0.37 -3.76 9.32 -26.54 -0.25 -4.00 16 22 C 0.09 0.96 2.85 -25.79 -0.07 0.89 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 C 0.07 0.63 6.48 -3.83 -0.02 0.60 16 25 N -0.84 -7.05 9.48 -10.37 -0.10 -7.14 16 26 C 0.08 0.81 4.86 -3.84 -0.02 0.80 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 28 C -0.19 -3.91 9.99 -39.40 -0.39 -4.31 16 29 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.13 3.09 5.64 -52.49 -0.30 2.79 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.09 0.92 7.98 -51.93 -0.41 0.51 16 33 H 0.09 0.87 7.35 -51.93 -0.38 0.49 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.49 5.88 -51.93 -0.31 0.18 16 36 H 0.08 0.51 8.01 -51.93 -0.42 0.10 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.45 7.41 -51.93 -0.38 0.06 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.34 2.17 9.08 -39.29 -0.36 1.82 16 43 H 0.34 2.76 8.99 -39.29 -0.35 2.41 16 44 H 0.09 1.05 7.27 -51.93 -0.38 0.68 16 45 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 46 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 47 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -34.11 380.57 -8.22 -42.33 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.93 Total: 5.75 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.30 Total: -12.91 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.30 Total: -38.84 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.16 Total: -19.21 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.86 Total: 17.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.11 -8.22 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.955 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.71 seconds