Wall clock time and date at job start Tue Mar 31 2020 23:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86792 * 120.00335 * 2 1 4 4 H 1.48499 * 109.47243 * 269.99961 * 3 2 1 5 5 H 1.48497 * 109.47097 * 30.00117 * 3 2 1 6 6 H 1.48506 * 109.47195 * 149.99969 * 3 2 1 7 7 C 1.38659 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 0.02562 * 7 2 1 9 9 O 1.34826 * 120.00206 * 180.02562 * 7 2 1 10 10 C 1.35752 * 117.00398 * 185.06323 * 9 7 2 11 11 C 1.38876 * 120.06336 * 354.46177 * 10 9 7 12 12 C 1.38103 * 119.93201 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06385 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92950 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47088 * 90.00093 * 14 13 12 16 16 O 1.21280 * 120.00211 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99846 * 180.02562 * 15 14 13 18 18 C 1.47505 * 118.75920 * 359.97438 * 17 15 14 19 19 C 1.53578 * 111.02843 * 221.62501 * 18 17 15 20 20 C 1.51544 * 109.57542 * 39.97750 * 19 18 17 21 21 O 1.42158 * 108.75865 * 268.59832 * 20 19 18 22 22 C 1.38015 * 119.43632 * 87.22704 * 21 20 19 23 23 H 1.09005 * 109.46643 * 56.57719 * 22 21 20 24 24 C 1.52997 * 109.46760 * 176.56786 * 22 21 20 25 25 N 1.46900 * 109.47232 * 300.00045 * 24 22 21 26 26 C 1.45125 * 118.75659 * 179.97438 * 17 15 14 27 27 C 1.38300 * 120.14099 * 0.24770 * 13 12 11 28 28 C 1.38099 * 120.06753 * 359.45515 * 27 13 12 29 29 H 0.97000 * 119.99902 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03680 * 0.04510 * 11 10 9 31 31 H 1.07992 * 119.97200 * 179.97438 * 12 11 10 32 32 H 1.08996 * 109.47509 * 329.99743 * 14 13 12 33 33 H 1.09000 * 109.46854 * 209.99477 * 14 13 12 34 34 H 1.08998 * 109.17182 * 101.22550 * 18 17 15 35 35 H 1.09005 * 109.16596 * 342.02124 * 18 17 15 36 36 H 1.08993 * 109.45315 * 279.94748 * 19 18 17 37 37 H 1.09000 * 109.45509 * 160.00524 * 19 18 17 38 38 H 1.08998 * 109.58152 * 148.82011 * 20 19 18 39 39 H 1.08996 * 109.70844 * 28.45660 * 20 19 18 40 40 H 1.08996 * 109.47475 * 60.00381 * 24 22 21 41 41 H 1.09004 * 109.46777 * 180.02562 * 24 22 21 42 42 H 1.00901 * 111.00325 * 180.02562 * 25 24 22 43 43 H 1.00899 * 111.00138 * 303.95470 * 25 24 22 44 44 H 1.08999 * 109.46113 * 330.69180 * 26 17 15 45 45 H 1.08993 * 109.46054 * 210.72938 * 26 17 15 46 46 H 1.08003 * 119.96755 * 179.70627 * 27 13 12 47 47 H 1.07998 * 120.03782 * 180.26616 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0463 -1.4000 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1361 0.0005 9 8 3.3570 -1.2010 0.0011 10 6 3.9733 -2.4059 -0.1052 11 6 3.2232 -3.5745 -0.0923 12 6 3.8531 -4.7989 -0.2000 13 6 5.2294 -4.8618 -0.3201 14 6 5.9136 -6.1994 -0.4369 15 6 6.0212 -6.5835 -1.8902 16 8 5.5847 -5.8441 -2.7467 17 7 6.6014 -7.7492 -2.2379 18 6 7.1223 -8.6279 -1.1739 19 6 8.4802 -9.2267 -1.5692 20 6 9.3142 -8.1742 -2.2714 21 8 9.0768 -8.2613 -3.6703 22 6 8.0239 -7.5619 -4.2245 23 1 8.1269 -6.5028 -3.9884 24 6 8.0307 -7.7488 -5.7430 25 7 9.2964 -7.2452 -6.2928 26 6 6.6901 -8.0924 -3.6452 27 6 5.9797 -3.7000 -0.3275 28 6 5.3552 -2.4724 -0.2264 29 1 -0.4850 0.8400 0.0004 30 1 2.1484 -3.5260 0.0015 31 1 3.2704 -5.7081 -0.1897 32 1 5.3329 -6.9524 0.0959 33 1 6.9116 -6.1361 -0.0031 34 1 6.4125 -9.4360 -0.9976 35 1 7.2395 -8.0494 -0.2574 36 1 8.3230 -10.0718 -2.2392 37 1 9.0020 -9.5655 -0.6741 38 1 10.3706 -8.3497 -2.0683 39 1 9.0330 -7.1836 -1.9140 40 1 7.9278 -8.8079 -5.9793 41 1 7.1993 -7.1961 -6.1808 42 1 9.3253 -7.3571 -7.2952 43 1 9.4459 -6.2819 -6.0323 44 1 5.8560 -7.6410 -4.1824 45 1 6.6507 -9.1758 -3.7579 46 1 7.0548 -3.7526 -0.4167 47 1 5.9412 -1.5653 -0.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:06 Heat of formation + Delta-G solvation = -94.720928 kcal Electronic energy + Delta-G solvation = -28865.092813 eV Core-core repulsion = 24819.957582 eV Total energy + Delta-G solvation = -4045.135231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.31 seconds Orbital eigenvalues (eV) -41.71532 -40.85842 -39.71975 -38.30175 -36.66328 -35.69885 -34.54221 -33.36298 -32.95891 -31.83508 -30.26255 -28.45976 -27.49690 -26.79516 -25.13468 -23.73423 -22.92094 -22.26433 -22.15374 -20.04175 -19.78645 -19.10702 -18.41116 -17.80330 -17.52658 -17.38883 -16.76733 -16.41904 -16.11651 -15.86653 -15.64731 -15.63980 -15.49371 -15.13062 -15.07735 -14.68392 -14.38102 -14.33139 -14.22035 -14.09812 -13.93276 -13.60327 -13.15615 -13.04824 -12.84225 -12.72261 -12.51755 -12.45978 -12.38669 -12.21226 -11.98017 -11.91681 -11.43798 -11.30252 -10.96867 -10.79566 -10.53824 -9.81413 -9.65612 -9.59969 -9.00348 -8.52104 -6.24708 0.56059 0.59242 1.28939 1.33639 1.50047 1.62446 1.98006 2.26447 2.70565 2.74765 3.01622 3.15267 3.48100 3.67363 3.84509 3.88419 3.96939 3.99788 4.01767 4.11096 4.14725 4.25336 4.31894 4.41767 4.43563 4.52519 4.54334 4.61499 4.63047 4.64960 4.77929 4.80176 4.89392 4.95490 5.00037 5.15433 5.20745 5.22811 5.35007 5.53632 5.60569 5.71296 5.77485 5.89010 6.12954 6.20207 6.32116 6.53377 6.73659 6.82132 7.20375 7.56665 8.59795 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.002393 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.814270 B =11698.255847 C =12252.448795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.245 6.245 10 C 0.119 3.881 11 C -0.238 4.238 12 C -0.064 4.064 13 C -0.137 4.137 14 C -0.079 4.079 15 C 0.504 3.496 16 O -0.576 6.576 17 N -0.611 5.611 18 C 0.094 3.906 19 C -0.157 4.157 20 C 0.065 3.935 21 O -0.382 6.382 22 C 0.105 3.895 23 H 0.022 0.978 24 C 0.073 3.927 25 N -0.848 5.848 26 C 0.082 3.918 27 C -0.059 4.059 28 C -0.193 4.193 29 H 0.285 0.715 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.352 0.648 43 H 0.340 0.660 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.151 0.849 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.574 -22.552 -3.833 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.097 0.903 9 O -0.153 6.153 10 C 0.070 3.930 11 C -0.257 4.257 12 C -0.082 4.082 13 C -0.138 4.138 14 C -0.118 4.118 15 C 0.293 3.707 16 O -0.455 6.455 17 N -0.344 5.344 18 C -0.026 4.026 19 C -0.195 4.195 20 C -0.011 4.011 21 O -0.301 6.301 22 C 0.044 3.956 23 H 0.040 0.960 24 C -0.058 4.058 25 N -0.379 5.379 26 C -0.042 4.042 27 C -0.077 4.077 28 C -0.212 4.212 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.166 0.834 43 H 0.153 0.847 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.168 0.832 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.691 -22.543 -3.914 31.528 hybrid contribution -1.598 1.764 -0.550 2.443 sum 20.094 -20.779 -4.464 29.248 Atomic orbital electron populations 1.69731 1.06910 1.29626 1.50222 1.25301 0.95918 1.02203 0.95491 0.85201 0.78859 0.77318 0.79222 1.19295 1.18884 1.18590 1.20712 0.78160 0.96114 1.52693 0.90347 1.83508 1.21200 1.27430 1.83184 1.19667 0.93240 0.85079 0.95035 1.21248 1.00068 0.93323 1.11054 1.20890 0.94707 0.96113 0.96496 1.19291 0.92841 0.95044 1.06640 1.20628 1.04194 0.94720 0.92272 1.21330 0.76540 0.80579 0.92205 1.90741 1.49099 1.52073 1.53553 1.48044 1.58891 1.20272 1.07178 1.22374 0.96011 0.94629 0.89636 1.22437 0.95024 0.99053 1.02993 1.22387 1.00650 0.98185 0.79877 1.86336 1.49659 1.70340 1.23735 1.21812 0.86580 0.93649 0.93573 0.96004 1.21714 0.91043 1.01713 0.91360 1.58594 1.35310 1.26433 1.17528 1.22247 0.98253 1.01821 0.81903 1.20907 1.00228 0.90290 0.96305 1.20493 0.90591 0.99778 1.10324 0.90534 0.87586 0.85032 0.85562 0.84953 0.89616 0.87385 0.90521 0.86552 0.87926 0.94030 0.89382 0.93869 0.83449 0.84746 0.91185 0.88145 0.83167 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.66 13.96 21.61 0.30 -56.35 16 2 C 0.01 0.54 5.49 84.83 0.47 1.01 16 3 Si 0.97 46.79 28.62 68.60 1.96 48.75 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.40 -24.54 9.95 67.92 0.68 -23.86 16 8 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 9 O -0.25 -13.94 8.59 -22.72 -0.20 -14.13 16 10 C 0.12 5.86 6.65 22.58 0.15 6.01 16 11 C -0.24 -11.08 9.17 22.39 0.21 -10.88 16 12 C -0.06 -2.34 9.69 22.25 0.22 -2.12 16 13 C -0.14 -4.20 4.38 -19.83 -0.09 -4.29 16 14 C -0.08 -1.51 4.17 29.10 0.12 -1.39 16 15 C 0.50 12.16 7.62 87.66 0.67 12.83 16 16 O -0.58 -20.46 15.46 -3.03 -0.05 -20.51 16 17 N -0.61 -10.45 2.19 -817.99 -1.79 -12.25 16 18 C 0.09 0.79 6.00 86.38 0.52 1.31 16 19 C -0.16 -1.11 5.79 30.31 0.18 -0.93 16 20 C 0.06 0.80 6.37 71.50 0.46 1.26 16 21 O -0.38 -6.92 9.32 -117.86 -1.10 -8.01 16 22 C 0.10 1.99 2.85 31.20 0.09 2.07 16 23 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 24 C 0.07 1.21 6.48 86.30 0.56 1.76 16 25 N -0.85 -13.40 9.48 -186.72 -1.77 -15.17 16 26 C 0.08 1.50 4.86 87.25 0.42 1.92 16 27 C -0.06 -1.91 9.69 22.25 0.22 -1.70 16 28 C -0.19 -7.80 9.99 22.39 0.22 -7.57 16 29 H 0.29 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.11 5.42 5.64 -2.91 -0.02 5.40 16 31 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.13 1.71 7.98 -2.39 -0.02 1.69 16 33 H 0.13 1.58 7.35 -2.39 -0.02 1.57 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.11 0.50 5.88 -2.38 -0.01 0.48 16 36 H 0.08 0.65 8.01 -2.39 -0.02 0.63 16 37 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.04 0.59 7.41 -2.39 -0.02 0.57 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.35 4.12 9.08 -89.69 -0.81 3.31 16 43 H 0.34 5.35 8.99 -89.69 -0.81 4.54 16 44 H 0.07 1.60 7.27 -2.39 -0.02 1.58 16 45 H 0.10 1.43 8.11 -2.39 -0.02 1.41 16 46 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 47 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -80.77 380.57 1.82 -78.95 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.61 Total: 23.29 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 5.08 Total: -24.57 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -3.26 Total: -83.77 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.34 Total: -42.65 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.96 Total: 48.75 kcal Total: -80.77 1.82 -78.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.775 kcal (2) G-P(sol) polarization free energy of solvation -80.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.32 seconds