Wall clock time and date at job start Tue Mar 31 2020 23:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 119.99654 * 2 1 4 4 H 1.48507 * 109.46941 * 270.00031 * 3 2 1 5 5 H 1.48497 * 109.47268 * 29.99899 * 3 2 1 6 6 H 1.48500 * 109.47196 * 150.00094 * 3 2 1 7 7 C 1.38647 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00335 * 179.97438 * 7 2 1 9 9 O 1.34839 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.35750 * 116.99921 * 185.05297 * 9 7 2 11 11 C 1.38880 * 120.06884 * 354.47748 * 10 9 7 12 12 C 1.38106 * 119.92801 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.06759 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.93124 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47223 * 89.99226 * 14 13 12 16 16 O 1.21285 * 119.99881 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99943 * 179.97438 * 15 14 13 18 18 C 1.46922 * 120.63242 * 359.97438 * 17 15 14 19 19 C 1.53194 * 108.77377 * 233.62339 * 18 17 15 20 20 C 1.53038 * 109.31095 * 305.36144 * 19 18 17 21 21 C 1.53040 * 109.53628 * 61.36684 * 20 19 18 22 22 N 1.46901 * 109.49939 * 58.58732 * 21 20 19 23 23 C 1.53009 * 109.49408 * 178.68054 * 21 20 19 24 24 O 1.42893 * 109.46681 * 184.83774 * 23 21 20 25 25 C 1.46925 * 120.63124 * 180.02562 * 17 15 14 26 26 C 1.38301 * 120.14443 * 0.29380 * 13 12 11 27 27 C 1.38104 * 120.06483 * 359.45463 * 26 13 12 28 28 H 0.96993 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.03946 * 0.03629 * 11 10 9 30 30 H 1.07997 * 119.95908 * 179.97438 * 12 11 10 31 31 H 1.09002 * 109.46655 * 329.99994 * 14 13 12 32 32 H 1.08992 * 109.47546 * 210.00235 * 14 13 12 33 33 H 1.08998 * 109.59070 * 113.83732 * 18 17 15 34 34 H 1.09004 * 109.58431 * 353.40718 * 18 17 15 35 35 H 1.08999 * 109.49711 * 185.41018 * 19 18 17 36 36 H 1.09001 * 109.49674 * 65.31565 * 19 18 17 37 37 H 1.08999 * 109.46135 * 301.33881 * 20 19 18 38 38 H 1.09000 * 109.45691 * 181.38754 * 20 19 18 39 39 H 1.00893 * 111.00228 * 180.16047 * 22 21 20 40 40 H 1.00902 * 110.99485 * 304.11559 * 22 21 20 41 41 H 1.08997 * 109.46932 * 304.83808 * 23 21 20 42 42 H 1.08999 * 109.46577 * 64.83852 * 23 21 20 43 43 H 0.96703 * 114.00003 * 179.97438 * 24 23 21 44 44 H 1.09005 * 109.58564 * 6.58987 * 25 17 15 45 45 H 1.09002 * 109.59177 * 246.16371 * 25 17 15 46 46 H 1.07994 * 119.97272 * 179.70967 * 26 13 12 47 47 H 1.07997 * 120.03957 * 180.27700 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4002 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4573 -3.4393 0.0922 12 6 4.2026 -4.5971 0.1997 13 6 3.5689 -5.8203 0.3210 14 6 4.3852 -7.0816 0.4386 15 6 4.6646 -7.3654 1.8920 16 8 4.2421 -6.6174 2.7481 17 7 5.3832 -8.4511 2.2406 18 6 5.9003 -9.3674 1.2152 19 6 5.4456 -10.7911 1.5517 20 6 5.8776 -11.1364 2.9787 21 6 5.2120 -10.1715 3.9625 22 7 3.7521 -10.2642 3.8285 23 6 5.6186 -10.5381 5.3913 24 8 4.9100 -9.7100 6.3154 25 6 5.6633 -8.7414 3.6534 26 6 2.1877 -5.8892 0.3290 27 6 1.4368 -4.7346 0.2271 28 1 -0.4850 0.8400 0.0004 29 1 3.9528 -2.4844 -0.0020 30 1 5.2814 -4.5470 0.1890 31 1 5.3275 -6.9556 -0.0945 32 1 3.8315 -7.9146 0.0057 33 1 6.9894 -9.3250 1.2029 34 1 5.5103 -9.0805 0.2386 35 1 5.9015 -11.4932 0.8536 36 1 4.3601 -10.8540 1.4749 37 1 6.9610 -11.0493 3.0612 38 1 5.5769 -12.1578 3.2120 39 1 3.2896 -9.6341 4.4665 40 1 3.4646 -10.0908 2.8770 41 1 5.3766 -11.5838 5.5810 42 1 6.6908 -10.3850 5.5145 43 1 5.1185 -9.8877 7.2428 44 1 5.1170 -8.0413 4.2856 45 1 6.7330 -8.6477 3.8406 46 1 1.6957 -6.8463 0.4191 47 1 0.3582 -4.7884 0.2378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:59 Heat of formation + Delta-G solvation = -84.716661 kcal Electronic energy + Delta-G solvation = -28824.087138 eV Core-core repulsion = 24779.385725 eV Total energy + Delta-G solvation = -4044.701413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.58 seconds Orbital eigenvalues (eV) -40.69965 -39.10715 -38.34776 -36.73964 -36.33538 -34.19289 -32.43379 -32.20459 -31.34047 -30.10714 -29.48543 -27.28749 -26.12404 -25.52214 -24.68270 -22.53349 -21.92797 -20.95876 -19.73503 -18.87648 -17.93529 -17.77523 -17.20963 -16.95220 -16.39263 -15.89241 -15.67100 -15.17651 -14.80380 -14.52758 -14.50316 -14.25976 -14.02889 -13.82246 -13.59207 -13.50474 -13.22784 -13.10812 -12.99937 -12.66886 -12.63687 -12.42499 -11.86468 -11.81171 -11.49782 -11.38520 -11.23082 -11.09859 -10.98189 -10.79673 -10.69454 -10.57198 -10.39402 -10.35740 -9.66097 -9.27973 -9.27313 -8.77751 -8.52328 -8.10280 -7.11563 -6.40292 -3.98863 2.28461 2.30160 2.72413 2.91193 3.15729 3.17309 3.21962 3.78901 4.00881 4.16223 4.31301 4.43440 4.54628 4.59940 4.62666 4.87039 4.91643 5.04401 5.06403 5.12459 5.16167 5.22122 5.25416 5.30060 5.35509 5.38136 5.41661 5.50101 5.64603 5.66840 5.76541 5.84493 5.88658 5.89216 6.26058 6.33991 6.46408 6.74763 6.92656 6.96009 7.09990 7.26894 7.27750 7.31988 7.32354 7.41589 7.49748 7.88641 8.05066 8.27502 9.05450 9.76199 10.77923 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.002273 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.811123 B =12313.596870 C =12682.722888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.171 4.171 14 C -0.078 4.078 15 C 0.510 3.490 16 O -0.516 6.516 17 N -0.623 5.623 18 C 0.103 3.897 19 C -0.137 4.137 20 C -0.107 4.107 21 C 0.109 3.891 22 N -0.829 5.829 23 C 0.092 3.908 24 O -0.568 6.568 25 C 0.086 3.914 26 C -0.059 4.059 27 C -0.191 4.191 28 H 0.269 0.731 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.352 0.648 40 H 0.339 0.661 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.380 0.620 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.107 0.893 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.033 -24.312 4.904 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.251 4.251 12 C -0.075 4.075 13 C -0.172 4.172 14 C -0.118 4.118 15 C 0.298 3.702 16 O -0.389 6.389 17 N -0.359 5.359 18 C -0.020 4.020 19 C -0.175 4.175 20 C -0.145 4.145 21 C 0.014 3.986 22 N -0.361 5.361 23 C 0.013 3.987 24 O -0.373 6.373 25 C -0.039 4.039 26 C -0.078 4.078 27 C -0.210 4.210 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.227 0.773 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.185 -24.159 5.020 28.461 hybrid contribution 0.997 1.499 0.263 1.819 sum 15.181 -22.659 5.283 27.782 Atomic orbital electron populations 1.70039 1.05940 1.27598 1.46292 1.25282 0.95839 0.98802 0.96621 0.85719 0.78957 0.80145 0.78647 1.19906 1.20260 1.19212 1.21326 0.91792 0.80861 1.52712 0.89109 1.83979 1.34337 1.11445 1.78416 1.19378 0.90277 0.88034 0.91999 1.21101 0.93817 0.98728 1.11482 1.20493 0.97976 0.91800 0.97211 1.18633 0.93208 0.92748 1.12592 1.20436 1.01025 0.97975 0.92321 1.21128 0.77050 0.79721 0.92256 1.90754 1.49709 1.46413 1.52052 1.48224 1.55136 1.25919 1.06666 1.21792 0.99119 0.89157 0.91924 1.21934 1.02418 0.96318 0.96827 1.21512 0.99741 0.99291 0.93946 1.21124 0.90117 0.93763 0.93558 1.58990 1.04222 1.61286 1.11596 1.22150 0.94414 0.94014 0.88149 1.86479 1.69086 1.62368 1.19351 1.22329 1.01021 0.97718 0.82829 1.20382 0.92725 0.96684 0.97978 1.20153 0.99482 0.90279 1.11092 0.92067 0.85607 0.87936 0.89126 0.89058 0.91397 0.89183 0.90211 0.90772 0.91331 0.90685 0.83426 0.84643 0.92719 0.93452 0.77286 0.88250 0.92030 0.87460 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -11.28 9.49 30.88 0.29 -10.99 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.28 9.76 0.02 0.00 -5.28 16 10 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 11 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 13 C -0.17 -3.04 4.38 -104.58 -0.46 -3.50 16 14 C -0.08 -1.00 4.18 -29.03 -0.12 -1.12 16 15 C 0.51 7.31 7.69 -10.99 -0.08 7.23 16 16 O -0.52 -10.06 15.45 5.55 0.09 -9.97 16 17 N -0.62 -6.55 2.55 -172.81 -0.44 -7.00 16 18 C 0.10 0.70 6.34 -3.71 -0.02 0.68 16 19 C -0.14 -0.78 5.76 -26.61 -0.15 -0.93 16 20 C -0.11 -0.66 4.89 -26.69 -0.13 -0.79 16 21 C 0.11 0.91 0.77 -131.51 -0.10 0.81 16 22 N -0.83 -8.22 8.82 0.81 0.01 -8.21 16 23 C 0.09 0.66 6.12 37.16 0.23 0.89 16 24 O -0.57 -4.86 12.55 -35.23 -0.44 -5.30 16 25 C 0.09 0.91 5.15 -3.75 -0.02 0.89 16 26 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 27 C -0.19 -4.26 9.99 -39.39 -0.39 -4.66 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 30 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 32 H 0.09 0.93 7.63 -51.93 -0.40 0.54 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.53 5.93 -51.93 -0.31 0.22 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.49 6.48 -51.93 -0.34 0.16 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.35 4.13 8.31 -39.30 -0.33 3.80 16 40 H 0.34 3.41 6.54 -39.29 -0.26 3.16 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.38 1.59 9.12 45.56 0.42 2.01 16 44 H 0.10 1.41 6.84 -51.93 -0.36 1.05 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 47 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -35.79 378.19 -7.71 -43.51 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.91 Total: 11.13 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.45 Total: -15.46 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.32 Total: -40.40 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.36 Total: -20.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.79 -7.71 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.212 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.58 seconds