Wall clock time and date at job start Tue Mar 31 2020 23:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 119.99654 * 2 1 4 4 H 1.48507 * 109.46941 * 270.00031 * 3 2 1 5 5 H 1.48497 * 109.47268 * 29.99899 * 3 2 1 6 6 H 1.48500 * 109.47196 * 150.00094 * 3 2 1 7 7 C 1.38647 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00335 * 179.97438 * 7 2 1 9 9 O 1.34839 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.35750 * 116.99921 * 185.05297 * 9 7 2 11 11 C 1.38880 * 120.06884 * 354.47748 * 10 9 7 12 12 C 1.38106 * 119.92801 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.06759 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.93124 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47223 * 89.99226 * 14 13 12 16 16 O 1.21285 * 119.99881 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99943 * 179.97438 * 15 14 13 18 18 C 1.46922 * 120.63242 * 359.97438 * 17 15 14 19 19 C 1.53194 * 108.77377 * 233.62339 * 18 17 15 20 20 C 1.53038 * 109.31095 * 305.36144 * 19 18 17 21 21 C 1.53040 * 109.53628 * 61.36684 * 20 19 18 22 22 N 1.46901 * 109.49939 * 58.58732 * 21 20 19 23 23 C 1.53009 * 109.49408 * 178.68054 * 21 20 19 24 24 O 1.42893 * 109.46681 * 184.83774 * 23 21 20 25 25 C 1.46925 * 120.63124 * 180.02562 * 17 15 14 26 26 C 1.38301 * 120.14443 * 0.29380 * 13 12 11 27 27 C 1.38104 * 120.06483 * 359.45463 * 26 13 12 28 28 H 0.96993 * 120.00243 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.03946 * 0.03629 * 11 10 9 30 30 H 1.07997 * 119.95908 * 179.97438 * 12 11 10 31 31 H 1.09002 * 109.46655 * 329.99994 * 14 13 12 32 32 H 1.08992 * 109.47546 * 210.00235 * 14 13 12 33 33 H 1.08998 * 109.59070 * 113.83732 * 18 17 15 34 34 H 1.09004 * 109.58431 * 353.40718 * 18 17 15 35 35 H 1.08999 * 109.49711 * 185.41018 * 19 18 17 36 36 H 1.09001 * 109.49674 * 65.31565 * 19 18 17 37 37 H 1.08999 * 109.46135 * 301.33881 * 20 19 18 38 38 H 1.09000 * 109.45691 * 181.38754 * 20 19 18 39 39 H 1.00893 * 111.00228 * 180.16047 * 22 21 20 40 40 H 1.00902 * 110.99485 * 304.11559 * 22 21 20 41 41 H 1.08997 * 109.46932 * 304.83808 * 23 21 20 42 42 H 1.08999 * 109.46577 * 64.83852 * 23 21 20 43 43 H 0.96703 * 114.00003 * 179.97438 * 24 23 21 44 44 H 1.09005 * 109.58564 * 6.58987 * 25 17 15 45 45 H 1.09002 * 109.59177 * 246.16371 * 25 17 15 46 46 H 1.07994 * 119.97272 * 179.70967 * 26 13 12 47 47 H 1.07997 * 120.03957 * 180.27700 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4002 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4573 -3.4393 0.0922 12 6 4.2026 -4.5971 0.1997 13 6 3.5689 -5.8203 0.3210 14 6 4.3852 -7.0816 0.4386 15 6 4.6646 -7.3654 1.8920 16 8 4.2421 -6.6174 2.7481 17 7 5.3832 -8.4511 2.2406 18 6 5.9003 -9.3674 1.2152 19 6 5.4456 -10.7911 1.5517 20 6 5.8776 -11.1364 2.9787 21 6 5.2120 -10.1715 3.9625 22 7 3.7521 -10.2642 3.8285 23 6 5.6186 -10.5381 5.3913 24 8 4.9100 -9.7100 6.3154 25 6 5.6633 -8.7414 3.6534 26 6 2.1877 -5.8892 0.3290 27 6 1.4368 -4.7346 0.2271 28 1 -0.4850 0.8400 0.0004 29 1 3.9528 -2.4844 -0.0020 30 1 5.2814 -4.5470 0.1890 31 1 5.3275 -6.9556 -0.0945 32 1 3.8315 -7.9146 0.0057 33 1 6.9894 -9.3250 1.2029 34 1 5.5103 -9.0805 0.2386 35 1 5.9015 -11.4932 0.8536 36 1 4.3601 -10.8540 1.4749 37 1 6.9610 -11.0493 3.0612 38 1 5.5769 -12.1578 3.2120 39 1 3.2896 -9.6341 4.4665 40 1 3.4646 -10.0908 2.8770 41 1 5.3766 -11.5838 5.5810 42 1 6.6908 -10.3850 5.5145 43 1 5.1185 -9.8877 7.2428 44 1 5.1170 -8.0413 4.2856 45 1 6.7330 -8.6477 3.8406 46 1 1.6957 -6.8463 0.4191 47 1 0.3582 -4.7884 0.2378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:47 Heat of formation + Delta-G solvation = -113.373509 kcal Electronic energy + Delta-G solvation = -28825.329793 eV Core-core repulsion = 24779.385725 eV Total energy + Delta-G solvation = -4045.944067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.16 seconds Orbital eigenvalues (eV) -41.59980 -40.72548 -39.46295 -38.15875 -37.31371 -35.00517 -34.39637 -32.90023 -32.75670 -31.79868 -30.24074 -28.60213 -27.34630 -26.67802 -25.89928 -23.65738 -23.11099 -22.48492 -20.66522 -19.85802 -19.63470 -18.84382 -18.42794 -18.10536 -17.28320 -16.78898 -16.54735 -16.42554 -16.17670 -15.98989 -15.71054 -15.50306 -15.35111 -15.05410 -14.71884 -14.61384 -14.43969 -14.31050 -14.07785 -13.72941 -13.66956 -13.59992 -13.22177 -12.97259 -12.82441 -12.55540 -12.45238 -12.29518 -12.18250 -12.12079 -11.90218 -11.67257 -11.54016 -11.19775 -10.92800 -10.88202 -10.71334 -10.08540 -9.78310 -9.32930 -8.91464 -8.48584 -6.16966 0.59475 0.65204 1.32525 1.42313 1.50774 1.66490 2.01193 2.16570 2.81557 3.13758 3.30372 3.48258 3.50769 3.68262 3.84397 3.86284 3.98473 4.02976 4.07917 4.14906 4.20585 4.31278 4.43196 4.48293 4.55201 4.58820 4.63999 4.65869 4.70817 4.77636 4.79862 4.89899 4.91688 5.05108 5.11082 5.13465 5.24910 5.28755 5.42247 5.52704 5.58020 5.69929 5.75592 6.01476 6.17788 6.20360 6.42260 6.44837 6.91548 6.95815 7.24560 7.76957 8.74963 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.002273 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.811123 B =12313.596870 C =12682.722888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.099 0.901 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.061 4.061 13 C -0.145 4.145 14 C -0.075 4.075 15 C 0.507 3.493 16 O -0.582 6.582 17 N -0.611 5.611 18 C 0.094 3.906 19 C -0.133 4.133 20 C -0.104 4.104 21 C 0.108 3.892 22 N -0.830 5.830 23 C 0.089 3.911 24 O -0.594 6.594 25 C 0.087 3.913 26 C -0.057 4.057 27 C -0.206 4.206 28 H 0.273 0.727 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.337 0.663 40 H 0.337 0.663 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.396 0.604 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.146 0.854 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.655 -27.630 4.116 33.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.263 4.263 12 C -0.079 4.079 13 C -0.146 4.146 14 C -0.114 4.114 15 C 0.297 3.703 16 O -0.461 6.461 17 N -0.345 5.345 18 C -0.027 4.027 19 C -0.171 4.171 20 C -0.142 4.142 21 C 0.014 3.986 22 N -0.360 5.360 23 C 0.010 3.990 24 O -0.402 6.402 25 C -0.038 4.038 26 C -0.075 4.075 27 C -0.225 4.225 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.246 0.754 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.163 0.837 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 17.875 -27.597 4.219 33.150 hybrid contribution 0.028 2.103 0.578 2.181 sum 17.904 -25.494 4.796 31.520 Atomic orbital electron populations 1.70187 1.08027 1.28818 1.48944 1.26621 0.96903 1.02770 0.95833 0.84577 0.77672 0.74445 0.79417 1.18374 1.19468 1.17954 1.21821 0.92470 0.81531 1.53288 0.88321 1.83939 1.35923 1.12573 1.81562 1.19929 0.91628 0.87988 0.94241 1.21222 0.93148 0.99958 1.11961 1.20913 0.99601 0.91201 0.96167 1.19250 0.93348 0.94519 1.07490 1.20564 1.02418 0.96334 0.92103 1.21292 0.76885 0.79990 0.92117 1.90757 1.52715 1.48951 1.53667 1.48236 1.53470 1.25165 1.07596 1.22183 1.00366 0.88787 0.91356 1.21935 1.02030 0.96100 0.97024 1.21540 1.00525 0.98621 0.93495 1.21296 0.89236 0.92925 0.95167 1.59052 1.05270 1.60594 1.11064 1.22260 0.95281 0.94114 0.87309 1.86450 1.69791 1.63080 1.20882 1.22308 1.01031 0.98191 0.82273 1.20853 0.93485 0.96900 0.96280 1.20439 0.99890 0.90697 1.11478 0.91799 0.86506 0.84585 0.85477 0.85168 0.89387 0.87381 0.87501 0.91746 0.89562 0.90226 0.85040 0.84848 0.91932 0.91638 0.75439 0.92462 0.90815 0.83675 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.62 13.67 21.61 0.30 -58.32 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 3 Si 1.02 44.66 29.55 68.60 2.03 46.69 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.42 -25.43 9.49 67.92 0.64 -24.79 16 8 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 9 O -0.23 -14.84 9.76 -22.84 -0.22 -15.07 16 10 C 0.11 6.02 6.65 22.58 0.15 6.17 16 11 C -0.24 -11.50 9.17 22.39 0.21 -11.29 16 12 C -0.06 -2.28 9.69 22.25 0.22 -2.06 16 13 C -0.15 -4.78 4.38 -19.83 -0.09 -4.86 16 14 C -0.08 -1.56 4.18 29.10 0.12 -1.44 16 15 C 0.51 13.13 7.69 87.66 0.67 13.81 16 16 O -0.58 -22.40 15.45 -3.04 -0.05 -22.44 16 17 N -0.61 -10.84 2.55 -819.05 -2.09 -12.93 16 18 C 0.09 0.78 6.34 86.36 0.55 1.33 16 19 C -0.13 -0.86 5.76 30.67 0.18 -0.69 16 20 C -0.10 -0.85 4.89 30.62 0.15 -0.70 16 21 C 0.11 1.56 0.77 3.58 0.00 1.56 16 22 N -0.83 -15.36 8.82 -151.34 -1.34 -16.70 16 23 C 0.09 1.11 6.12 71.99 0.44 1.55 16 24 O -0.59 -9.85 12.55 -148.98 -1.87 -11.72 16 25 C 0.09 1.68 5.15 86.34 0.44 2.13 16 26 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 27 C -0.21 -9.51 9.99 22.39 0.22 -9.28 16 28 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 29 H 0.12 5.59 5.64 -2.91 -0.02 5.57 16 30 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.13 1.85 7.89 -2.39 -0.02 1.83 16 32 H 0.13 1.81 7.63 -2.39 -0.02 1.79 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.11 0.55 5.93 -2.39 -0.01 0.53 16 35 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.06 0.59 6.48 -2.39 -0.02 0.57 16 37 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.34 7.96 8.31 -89.70 -0.75 7.21 16 40 H 0.34 6.17 6.54 -89.69 -0.59 5.58 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.40 3.07 9.12 -74.06 -0.68 2.40 16 44 H 0.06 1.64 6.84 -2.38 -0.02 1.62 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 46 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 47 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -87.40 378.19 0.37 -87.03 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.98 Total: 34.85 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 4.59 Total: -31.40 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -3.13 Total: -87.95 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -2.14 Total: -49.23 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -87.40 0.37 -87.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.343 kcal (2) G-P(sol) polarization free energy of solvation -87.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.16 seconds