Wall clock time and date at job start Tue Mar 31 2020 23:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 119.99937 * 2 1 4 4 H 1.48509 * 109.47172 * 269.99905 * 3 2 1 5 5 H 1.48497 * 109.47508 * 29.99676 * 3 2 1 6 6 H 1.48500 * 109.47293 * 150.00129 * 3 2 1 7 7 C 1.38650 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99608 * 359.97438 * 7 2 1 9 9 O 1.34824 * 120.00403 * 180.02562 * 7 2 1 10 10 C 1.35753 * 117.00005 * 185.05359 * 9 7 2 11 11 C 1.38875 * 120.07183 * 354.46722 * 10 9 7 12 12 C 1.38098 * 119.92995 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07170 * 359.97389 * 12 11 10 14 14 C 1.50697 * 119.93024 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47403 * 89.99665 * 14 13 12 16 16 O 1.21280 * 119.99879 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.46929 * 120.63094 * 0.02562 * 17 15 14 19 19 C 1.53186 * 108.77452 * 126.36943 * 18 17 15 20 20 C 1.53048 * 109.31255 * 54.63566 * 19 18 17 21 21 C 1.53037 * 109.53577 * 298.63201 * 20 19 18 22 22 N 1.46898 * 109.50360 * 301.41674 * 21 20 19 23 23 C 1.53004 * 109.49818 * 181.31450 * 21 20 19 24 24 O 1.42899 * 109.47332 * 180.16198 * 23 21 20 25 25 C 1.46928 * 120.63008 * 180.02562 * 17 15 14 26 26 C 1.38299 * 120.13589 * 0.27845 * 13 12 11 27 27 C 1.38095 * 120.06945 * 359.49156 * 26 13 12 28 28 H 0.97003 * 120.00071 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.03147 * 359.97438 * 11 10 9 30 30 H 1.08008 * 119.95919 * 179.97438 * 12 11 10 31 31 H 1.09005 * 109.47121 * 329.99552 * 14 13 12 32 32 H 1.08999 * 109.46751 * 210.00393 * 14 13 12 33 33 H 1.09006 * 109.58438 * 246.15837 * 18 17 15 34 34 H 1.08997 * 109.58512 * 6.43735 * 18 17 15 35 35 H 1.09000 * 109.50095 * 174.58635 * 19 18 17 36 36 H 1.09006 * 109.49775 * 294.65347 * 19 18 17 37 37 H 1.09003 * 109.45792 * 178.61458 * 20 19 18 38 38 H 1.08990 * 109.45991 * 58.65524 * 20 19 18 39 39 H 1.00900 * 111.00361 * 179.84080 * 22 21 20 40 40 H 1.00905 * 110.99453 * 303.79234 * 22 21 20 41 41 H 1.09001 * 109.47320 * 300.16975 * 23 21 20 42 42 H 1.09004 * 109.46864 * 60.16126 * 23 21 20 43 43 H 0.96699 * 114.00043 * 180.02562 * 24 23 21 44 44 H 1.08999 * 109.59070 * 113.83864 * 25 17 15 45 45 H 1.09006 * 109.70144 * 353.48455 * 25 17 15 46 46 H 1.08003 * 119.96120 * 179.72086 * 26 13 12 47 47 H 1.08006 * 120.03794 * 180.25802 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4002 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3571 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1050 11 6 3.2235 -3.5744 -0.0920 12 6 3.8535 -4.7985 -0.2006 13 6 5.2297 -4.8612 -0.3227 14 6 5.9138 -6.1987 -0.4416 15 6 6.0192 -6.5816 -1.8953 16 8 5.5823 -5.8411 -2.7506 17 7 6.6000 -7.7465 -2.2449 18 6 7.1344 -8.6538 -1.2202 19 6 6.5237 -10.0436 -1.4252 20 6 6.7774 -10.5008 -2.8635 21 6 6.1042 -9.5293 -3.8356 22 7 4.6628 -9.4769 -3.5572 23 6 6.3306 -10.0052 -5.2720 24 8 5.7050 -9.0956 -6.1794 25 6 6.7106 -8.1334 -3.6580 26 6 5.9797 -3.6993 -0.3307 27 6 5.3553 -2.4719 -0.2272 28 1 -0.4850 0.8401 -0.0004 29 1 2.1488 -3.5260 0.0029 30 1 3.2708 -5.7078 -0.1902 31 1 5.3338 -6.9521 0.0915 32 1 6.9123 -6.1357 -0.0090 33 1 8.2188 -8.7135 -1.3147 34 1 6.8741 -8.2803 -0.2298 35 1 6.9835 -10.7488 -0.7328 36 1 5.4502 -10.0001 -1.2407 37 1 6.3652 -11.4999 -3.0050 38 1 7.8503 -10.5204 -3.0544 39 1 4.1961 -8.8396 -4.1849 40 1 4.2517 -10.3972 -3.6048 41 1 7.4004 -10.0451 -5.4773 42 1 5.8993 -10.9983 -5.3980 43 1 5.8079 -9.3357 -7.1104 44 1 7.7603 -8.1507 -3.9511 45 1 6.1699 -7.4183 -4.2782 46 1 7.0546 -3.7518 -0.4216 47 1 5.9412 -1.5647 -0.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:43 Heat of formation + Delta-G solvation = -82.940551 kcal Electronic energy + Delta-G solvation = -28832.261226 eV Core-core repulsion = 24787.636831 eV Total energy + Delta-G solvation = -4044.624395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -40.47967 -39.15878 -38.38342 -36.79309 -36.35938 -34.25585 -32.41650 -32.08432 -31.47170 -30.11984 -29.42560 -27.33409 -26.12432 -25.49803 -24.48214 -22.41263 -21.98229 -20.86612 -19.79043 -18.81522 -17.83994 -17.78166 -17.14770 -17.04335 -16.26047 -15.88252 -15.37932 -15.22979 -15.00896 -14.63884 -14.47893 -14.13112 -14.00355 -13.82035 -13.60551 -13.47553 -13.19184 -13.05660 -12.81662 -12.56647 -12.41562 -12.20860 -12.16746 -12.08640 -11.51676 -11.31304 -11.27462 -11.16024 -10.88132 -10.76480 -10.65381 -10.57337 -10.52188 -10.07061 -9.50843 -9.28147 -8.89712 -8.76822 -8.55173 -8.11304 -7.18679 -6.32905 -3.98899 2.27504 2.28326 2.90972 3.09435 3.28370 3.32638 3.47105 3.62150 4.20195 4.31645 4.37672 4.42178 4.55646 4.65771 4.69063 4.81441 4.95946 4.97219 5.01849 5.07408 5.15222 5.20937 5.25392 5.33135 5.36278 5.46162 5.47505 5.58140 5.65204 5.72745 5.79428 5.86974 5.91745 6.05877 6.24873 6.45032 6.51104 6.68508 6.91653 6.93123 7.14240 7.14836 7.26625 7.34670 7.43043 7.51333 7.73190 7.90817 8.13879 8.46996 9.02874 9.66559 10.75058 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.002356 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.029351 B =11879.448919 C =12368.301753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.387 4.387 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.161 3.839 11 C -0.219 4.219 12 C -0.057 4.057 13 C -0.158 4.158 14 C -0.080 4.080 15 C 0.518 3.482 16 O -0.522 6.522 17 N -0.608 5.608 18 C 0.109 3.891 19 C -0.127 4.127 20 C -0.106 4.106 21 C 0.108 3.892 22 N -0.824 5.824 23 C 0.046 3.954 24 O -0.567 6.567 25 C 0.131 3.869 26 C -0.063 4.063 27 C -0.191 4.191 28 H 0.278 0.722 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.353 0.647 40 H 0.334 0.666 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.381 0.619 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.862 -25.448 -6.075 31.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.109 3.891 11 C -0.238 4.238 12 C -0.075 4.075 13 C -0.159 4.159 14 C -0.120 4.120 15 C 0.306 3.694 16 O -0.396 6.396 17 N -0.343 5.343 18 C -0.015 4.015 19 C -0.165 4.165 20 C -0.144 4.144 21 C 0.014 3.986 22 N -0.355 5.355 23 C -0.034 4.034 24 O -0.372 6.372 25 C 0.008 3.992 26 C -0.081 4.081 27 C -0.210 4.210 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.167 0.833 40 H 0.147 0.853 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.228 0.772 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.127 0.873 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.541 -24.052 -5.219 29.654 hybrid contribution 0.205 -0.309 -1.661 1.702 sum 16.745 -24.361 -6.881 30.352 Atomic orbital electron populations 1.69651 1.05551 1.28347 1.48528 1.24455 0.95016 0.98767 0.95819 0.86184 0.80309 0.81482 0.78934 1.19925 1.20873 1.18374 1.20774 0.76978 0.96612 1.51902 0.87653 1.83566 1.22545 1.25799 1.80583 1.19111 0.91696 0.85458 0.92800 1.21219 1.00992 0.91814 1.09751 1.20568 0.93276 0.96709 0.96972 1.18737 0.93586 0.92623 1.10944 1.20446 1.01821 0.96777 0.92921 1.20867 0.76577 0.80104 0.91833 1.90729 1.46188 1.50565 1.52096 1.47914 1.60170 1.19914 1.06277 1.21687 0.97570 0.89976 0.92219 1.21792 1.03208 0.95955 0.95565 1.21499 0.99994 0.97732 0.95148 1.21225 0.90576 0.96412 0.90399 1.58774 1.01518 1.14303 1.60858 1.23053 0.96861 0.92062 0.91442 1.86497 1.78704 1.52271 1.19754 1.21380 0.99610 0.94934 0.83306 1.20391 0.98100 0.91393 0.98241 1.20137 0.91956 0.97690 1.11254 0.91162 0.85023 0.87523 0.88957 0.89242 0.91974 0.89478 0.91167 0.89778 0.91784 0.91426 0.83254 0.85319 0.93303 0.93619 0.77207 0.92065 0.88257 0.87300 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.33 13.96 55.48 0.77 -25.56 16 2 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 3 Si 0.91 22.49 28.62 -169.99 -4.86 17.63 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.39 -11.38 9.95 30.88 0.31 -11.08 16 8 H 0.11 3.17 5.44 -52.49 -0.29 2.88 16 9 O -0.22 -6.09 8.59 0.06 0.00 -6.09 16 10 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.22 -5.07 9.17 -39.40 -0.36 -5.44 16 12 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 13 C -0.16 -2.83 4.38 -104.58 -0.46 -3.29 16 14 C -0.08 -1.07 4.17 -29.04 -0.12 -1.19 16 15 C 0.52 7.80 7.69 -10.99 -0.08 7.72 16 16 O -0.52 -10.46 15.45 5.56 0.09 -10.37 16 17 N -0.61 -6.85 2.89 -172.74 -0.50 -7.35 16 18 C 0.11 0.82 6.34 -3.71 -0.02 0.80 16 19 C -0.13 -0.81 5.93 -26.61 -0.16 -0.97 16 20 C -0.11 -0.62 4.83 -26.69 -0.13 -0.75 16 21 C 0.11 0.86 0.66 -131.46 -0.09 0.77 16 22 N -0.82 -7.56 7.95 0.85 0.01 -7.55 16 23 C 0.05 0.30 6.13 37.16 0.23 0.52 16 24 O -0.57 -4.45 12.52 -35.23 -0.44 -4.89 16 25 C 0.13 1.42 5.09 -3.69 -0.02 1.40 16 26 C -0.06 -1.17 9.69 -39.61 -0.38 -1.55 16 27 C -0.19 -4.09 9.99 -39.39 -0.39 -4.48 16 28 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.13 3.18 5.64 -52.48 -0.30 2.89 16 30 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.09 1.05 7.64 -51.93 -0.40 0.66 16 32 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.59 5.93 -51.93 -0.31 0.28 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.69 7.53 -51.93 -0.39 0.30 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.35 3.93 8.46 -39.29 -0.33 3.60 16 40 H 0.33 2.44 8.99 -39.29 -0.35 2.09 16 41 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.38 1.38 9.12 45.56 0.42 1.79 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 1.43 6.73 -51.93 -0.35 1.08 16 46 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 47 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -35.57 379.98 -7.70 -43.27 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.07 Total: 8.82 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.42 Total: -13.62 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.28 Total: -40.46 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.35 Total: -21.36 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.86 Total: 17.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.57 -7.70 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.672 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds