Wall clock time and date at job start Tue Mar 31 2020 23:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 119.99937 * 2 1 4 4 H 1.48509 * 109.47172 * 269.99905 * 3 2 1 5 5 H 1.48497 * 109.47508 * 29.99676 * 3 2 1 6 6 H 1.48500 * 109.47293 * 150.00129 * 3 2 1 7 7 C 1.38650 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99608 * 359.97438 * 7 2 1 9 9 O 1.34824 * 120.00403 * 180.02562 * 7 2 1 10 10 C 1.35753 * 117.00005 * 185.05359 * 9 7 2 11 11 C 1.38875 * 120.07183 * 354.46722 * 10 9 7 12 12 C 1.38098 * 119.92995 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07170 * 359.97389 * 12 11 10 14 14 C 1.50697 * 119.93024 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47403 * 89.99665 * 14 13 12 16 16 O 1.21280 * 119.99879 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.46929 * 120.63094 * 0.02562 * 17 15 14 19 19 C 1.53186 * 108.77452 * 126.36943 * 18 17 15 20 20 C 1.53048 * 109.31255 * 54.63566 * 19 18 17 21 21 C 1.53037 * 109.53577 * 298.63201 * 20 19 18 22 22 N 1.46898 * 109.50360 * 301.41674 * 21 20 19 23 23 C 1.53004 * 109.49818 * 181.31450 * 21 20 19 24 24 O 1.42899 * 109.47332 * 180.16198 * 23 21 20 25 25 C 1.46928 * 120.63008 * 180.02562 * 17 15 14 26 26 C 1.38299 * 120.13589 * 0.27845 * 13 12 11 27 27 C 1.38095 * 120.06945 * 359.49156 * 26 13 12 28 28 H 0.97003 * 120.00071 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.03147 * 359.97438 * 11 10 9 30 30 H 1.08008 * 119.95919 * 179.97438 * 12 11 10 31 31 H 1.09005 * 109.47121 * 329.99552 * 14 13 12 32 32 H 1.08999 * 109.46751 * 210.00393 * 14 13 12 33 33 H 1.09006 * 109.58438 * 246.15837 * 18 17 15 34 34 H 1.08997 * 109.58512 * 6.43735 * 18 17 15 35 35 H 1.09000 * 109.50095 * 174.58635 * 19 18 17 36 36 H 1.09006 * 109.49775 * 294.65347 * 19 18 17 37 37 H 1.09003 * 109.45792 * 178.61458 * 20 19 18 38 38 H 1.08990 * 109.45991 * 58.65524 * 20 19 18 39 39 H 1.00900 * 111.00361 * 179.84080 * 22 21 20 40 40 H 1.00905 * 110.99453 * 303.79234 * 22 21 20 41 41 H 1.09001 * 109.47320 * 300.16975 * 23 21 20 42 42 H 1.09004 * 109.46864 * 60.16126 * 23 21 20 43 43 H 0.96699 * 114.00043 * 180.02562 * 24 23 21 44 44 H 1.08999 * 109.59070 * 113.83864 * 25 17 15 45 45 H 1.09006 * 109.70144 * 353.48455 * 25 17 15 46 46 H 1.08003 * 119.96120 * 179.72086 * 26 13 12 47 47 H 1.08006 * 120.03794 * 180.25802 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4002 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3571 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1050 11 6 3.2235 -3.5744 -0.0920 12 6 3.8535 -4.7985 -0.2006 13 6 5.2297 -4.8612 -0.3227 14 6 5.9138 -6.1987 -0.4416 15 6 6.0192 -6.5816 -1.8953 16 8 5.5823 -5.8411 -2.7506 17 7 6.6000 -7.7465 -2.2449 18 6 7.1344 -8.6538 -1.2202 19 6 6.5237 -10.0436 -1.4252 20 6 6.7774 -10.5008 -2.8635 21 6 6.1042 -9.5293 -3.8356 22 7 4.6628 -9.4769 -3.5572 23 6 6.3306 -10.0052 -5.2720 24 8 5.7050 -9.0956 -6.1794 25 6 6.7106 -8.1334 -3.6580 26 6 5.9797 -3.6993 -0.3307 27 6 5.3553 -2.4719 -0.2272 28 1 -0.4850 0.8401 -0.0004 29 1 2.1488 -3.5260 0.0029 30 1 3.2708 -5.7078 -0.1902 31 1 5.3338 -6.9521 0.0915 32 1 6.9123 -6.1357 -0.0090 33 1 8.2188 -8.7135 -1.3147 34 1 6.8741 -8.2803 -0.2298 35 1 6.9835 -10.7488 -0.7328 36 1 5.4502 -10.0001 -1.2407 37 1 6.3652 -11.4999 -3.0050 38 1 7.8503 -10.5204 -3.0544 39 1 4.1961 -8.8396 -4.1849 40 1 4.2517 -10.3972 -3.6048 41 1 7.4004 -10.0451 -5.4773 42 1 5.8993 -10.9983 -5.3980 43 1 5.8079 -9.3357 -7.1104 44 1 7.7603 -8.1507 -3.9511 45 1 6.1699 -7.4183 -4.2782 46 1 7.0546 -3.7518 -0.4216 47 1 5.9412 -1.5647 -0.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:25 Heat of formation + Delta-G solvation = -111.364871 kcal Electronic energy + Delta-G solvation = -28833.493797 eV Core-core repulsion = 24787.636831 eV Total energy + Delta-G solvation = -4045.856966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 18.03 seconds Orbital eigenvalues (eV) -41.42919 -40.77557 -39.45404 -38.23046 -37.29049 -35.04781 -34.51175 -32.95091 -32.72933 -31.80334 -30.19350 -28.66281 -27.22918 -26.60878 -25.82152 -23.70378 -23.01375 -22.38471 -20.69774 -19.85291 -19.61649 -19.06851 -18.39744 -18.03000 -17.10081 -16.82164 -16.55716 -16.35895 -16.01330 -15.76406 -15.72275 -15.64816 -15.44154 -15.12497 -14.76556 -14.65941 -14.36882 -14.28435 -14.09635 -13.97767 -13.70999 -13.47969 -13.03791 -12.96949 -12.73851 -12.72584 -12.46824 -12.40341 -12.30630 -11.93689 -11.84964 -11.73051 -11.45991 -11.27969 -11.04488 -10.92890 -10.66993 -9.78293 -9.58166 -9.41321 -8.96676 -8.50357 -6.22903 0.59100 0.62985 1.29730 1.35041 1.51424 1.80824 2.16527 2.28133 2.77855 3.04444 3.15499 3.18804 3.61306 3.72140 3.84294 3.92884 4.01878 4.03704 4.16375 4.18351 4.24871 4.32397 4.45741 4.49928 4.56548 4.58587 4.62648 4.66243 4.76740 4.79428 4.82624 4.94930 4.98037 5.00802 5.16493 5.20233 5.26145 5.38417 5.55034 5.57329 5.70098 5.74925 5.80393 5.91391 6.24106 6.25045 6.56510 6.58908 6.81976 6.83830 7.39283 7.58563 8.61704 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.002356 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.029351 B =11879.448919 C =12368.301753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.400 4.400 8 H 0.078 0.922 9 O -0.245 6.245 10 C 0.118 3.882 11 C -0.237 4.237 12 C -0.065 4.065 13 C -0.135 4.135 14 C -0.077 4.077 15 C 0.512 3.488 16 O -0.587 6.587 17 N -0.598 5.598 18 C 0.098 3.902 19 C -0.124 4.124 20 C -0.102 4.102 21 C 0.108 3.892 22 N -0.833 5.833 23 C 0.047 3.953 24 O -0.594 6.594 25 C 0.128 3.872 26 C -0.060 4.060 27 C -0.192 4.192 28 H 0.285 0.715 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.337 0.663 40 H 0.344 0.656 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.396 0.604 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.153 0.847 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.894 -28.302 -5.573 35.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.095 0.905 9 O -0.153 6.153 10 C 0.069 3.931 11 C -0.257 4.257 12 C -0.083 4.083 13 C -0.136 4.136 14 C -0.116 4.116 15 C 0.302 3.698 16 O -0.466 6.466 17 N -0.330 5.330 18 C -0.023 4.023 19 C -0.162 4.162 20 C -0.140 4.140 21 C 0.014 3.986 22 N -0.363 5.363 23 C -0.033 4.033 24 O -0.402 6.402 25 C 0.005 3.995 26 C -0.078 4.078 27 C -0.211 4.211 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.246 0.754 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.170 0.830 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.628 -27.017 -4.705 34.316 hybrid contribution -0.850 0.195 -1.879 2.072 sum 19.778 -26.822 -6.584 33.970 Atomic orbital electron populations 1.69734 1.06924 1.29607 1.50334 1.25309 0.95931 1.02224 0.95494 0.85191 0.78856 0.77247 0.79225 1.19301 1.18804 1.18569 1.20711 0.78204 0.96105 1.52651 0.90480 1.83504 1.21158 1.27365 1.83293 1.19653 0.93251 0.85026 0.95153 1.21229 1.00006 0.93313 1.11107 1.20864 0.94777 0.96022 0.96620 1.19311 0.92821 0.95163 1.06262 1.20557 1.04029 0.94407 0.92585 1.21082 0.76294 0.80693 0.91778 1.90725 1.49361 1.52865 1.53697 1.47965 1.58452 1.19159 1.07423 1.22083 0.98964 0.89736 0.91553 1.21777 1.02114 0.95823 0.96485 1.21528 1.00832 0.97582 0.94085 1.21295 0.89738 0.95249 0.92294 1.58793 1.02422 1.14595 1.60538 1.23077 0.97741 0.92257 0.90190 1.86473 1.79172 1.53309 1.21267 1.21419 1.00065 0.95588 0.82471 1.20925 1.00332 0.90225 0.96283 1.20501 0.90562 0.99777 1.10276 0.90544 0.87659 0.85447 0.86257 0.85028 0.89504 0.88147 0.88479 0.91748 0.90353 0.89679 0.85019 0.84252 0.91859 0.92018 0.75400 0.90534 0.92592 0.82956 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.76 13.96 21.61 0.30 -57.46 16 2 C 0.01 0.51 5.49 84.83 0.47 0.98 16 3 Si 0.97 47.74 28.62 68.60 1.96 49.71 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.40 -25.13 9.95 67.92 0.68 -24.46 16 8 H 0.08 5.10 5.44 -2.91 -0.02 5.08 16 9 O -0.25 -14.31 8.59 -22.71 -0.20 -14.51 16 10 C 0.12 6.05 6.65 22.58 0.15 6.20 16 11 C -0.24 -11.63 9.17 22.39 0.21 -11.42 16 12 C -0.06 -2.56 9.69 22.25 0.22 -2.35 16 13 C -0.13 -4.52 4.38 -19.84 -0.09 -4.60 16 14 C -0.08 -1.73 4.17 29.10 0.12 -1.61 16 15 C 0.51 14.30 7.69 87.66 0.67 14.98 16 16 O -0.59 -23.52 15.45 -3.03 -0.05 -23.57 16 17 N -0.60 -11.79 2.89 -818.83 -2.37 -14.15 16 18 C 0.10 1.02 6.34 86.36 0.55 1.56 16 19 C -0.12 -1.04 5.93 30.67 0.18 -0.86 16 20 C -0.10 -0.79 4.83 30.62 0.15 -0.64 16 21 C 0.11 1.48 0.66 3.62 0.00 1.49 16 22 N -0.83 -14.51 7.95 -151.21 -1.20 -15.71 16 23 C 0.05 0.50 6.13 71.98 0.44 0.94 16 24 O -0.59 -9.00 12.52 -148.98 -1.86 -10.86 16 25 C 0.13 2.58 5.09 86.37 0.44 3.02 16 26 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 27 C -0.19 -8.12 9.99 22.39 0.22 -7.90 16 28 H 0.28 16.24 8.31 -92.71 -0.77 15.47 16 29 H 0.11 5.62 5.64 -2.91 -0.02 5.61 16 30 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.12 2.15 7.64 -2.38 -0.02 2.13 16 32 H 0.13 1.96 7.88 -2.39 -0.02 1.94 16 33 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.10 0.79 5.93 -2.39 -0.01 0.78 16 35 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.06 0.84 7.53 -2.38 -0.02 0.82 16 37 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.34 7.71 8.46 -89.69 -0.76 6.95 16 40 H 0.34 4.57 8.99 -89.69 -0.81 3.76 16 41 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.40 2.60 9.12 -74.06 -0.68 1.92 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.65 6.73 -2.38 -0.02 1.64 16 46 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 47 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -85.10 379.98 0.00 -85.11 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -1.21 Total: 27.97 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 4.62 Total: -26.53 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -3.27 Total: -87.33 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -2.11 Total: -48.94 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.96 Total: 49.71 kcal Total: -85.10 0.00 -85.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.257 kcal (2) G-P(sol) polarization free energy of solvation -85.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.03 seconds