Wall clock time and date at job start Tue Mar 31 2020 19:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 S 1.81403 * 109.46728 * 65.14339 * 3 2 1 5 5 C 1.81407 * 102.99775 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47117 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.46918 * 180.02562 * 6 5 4 8 8 C 1.36738 * 127.13891 * 85.75486 * 7 6 5 9 9 C 1.50697 * 126.34673 * 359.94584 * 8 7 6 10 10 C 1.53004 * 117.49666 * 188.74490 * 9 8 7 11 11 C 1.53007 * 117.50104 * 120.08470 * 9 8 7 12 12 N 1.30295 * 107.30387 * 179.97438 * 8 7 6 13 13 N 1.28523 * 110.05520 * 0.02562 * 12 8 7 14 14 C 1.31218 * 109.86035 * 359.73740 * 13 12 8 15 15 N 1.38579 * 126.47183 * 180.25811 * 14 13 12 16 16 C 1.46897 * 110.99870 * 71.86761 * 15 14 13 17 17 C 1.46901 * 111.00439 * 307.91227 * 15 14 13 18 18 H 1.09000 * 109.47073 * 59.99764 * 17 15 14 19 19 C 1.53002 * 109.46677 * 300.00252 * 17 15 14 20 20 C 1.50701 * 109.47351 * 180.02562 * 17 15 14 21 21 H 1.08000 * 119.99652 * 0.02562 * 20 17 15 22 22 C 1.37874 * 120.00019 * 179.97438 * 20 17 15 23 23 N 1.31517 * 120.00027 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 120.00070 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.46864 * 90.00184 * 24 22 20 26 26 H 1.48492 * 109.47153 * 210.00087 * 24 22 20 27 27 H 1.48503 * 109.46947 * 330.00490 * 24 22 20 28 28 H 4.62818 * 6.06284 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47185 * 305.14796 * 3 2 1 30 30 H 1.08993 * 109.47005 * 185.14348 * 3 2 1 31 31 H 1.08999 * 109.47029 * 59.99706 * 5 4 3 32 32 H 1.09000 * 109.47022 * 299.99912 * 5 4 3 33 33 H 1.08996 * 109.47100 * 59.99392 * 6 5 4 34 34 H 1.09000 * 109.46753 * 299.99648 * 6 5 4 35 35 H 1.09004 * 115.54979 * 334.41120 * 9 8 7 36 36 H 1.08996 * 117.50239 * 359.97438 * 10 9 8 37 37 H 1.09003 * 117.49800 * 145.01971 * 10 9 8 38 38 H 1.08995 * 117.49469 * 214.98074 * 11 9 8 39 39 H 1.08998 * 117.49519 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.47392 * 53.76852 * 16 15 14 41 41 H 1.09002 * 109.47161 * 173.76465 * 16 15 14 42 42 H 1.08998 * 109.47270 * 293.76474 * 16 15 14 43 43 H 1.08999 * 109.47208 * 60.00044 * 19 17 15 44 44 H 1.09000 * 109.46568 * 180.02562 * 19 17 15 45 45 H 1.09000 * 109.46970 * 299.99575 * 19 17 15 46 46 H 0.96999 * 119.99847 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2509 -0.7180 -1.5519 5 6 5.0534 -0.6320 -1.3661 6 6 5.7230 -1.2095 -2.6147 7 7 7.1785 -1.1406 -2.4644 8 6 7.9893 -2.0548 -1.8507 9 6 7.5510 -3.3377 -1.1926 10 6 8.5970 -4.1125 -0.3886 11 6 8.1232 -4.6456 -1.7431 12 7 9.2110 -1.6109 -1.9400 13 7 9.2271 -0.4869 -2.5629 14 6 8.0071 -0.1533 -2.9123 15 7 7.6309 0.9876 -3.6032 16 6 8.0457 0.9117 -5.0103 17 6 8.1687 2.1939 -2.9601 18 1 9.2572 2.1404 -2.9401 19 6 7.6364 2.2891 -1.5288 20 6 7.7392 3.4115 -3.7373 21 1 7.1275 3.3003 -4.6204 22 6 8.1262 4.6674 -3.3204 23 7 8.8707 4.8028 -2.2447 24 14 7.5945 6.1766 -4.2842 25 1 6.2988 6.6715 -3.7536 26 1 8.6232 7.2387 -4.1479 27 1 7.4385 5.8192 -5.7171 28 1 -1.0498 0.0001 -0.0002 29 1 3.0097 -0.5908 0.8403 30 1 3.0089 1.0243 0.0921 31 1 5.3564 -1.2078 -0.4916 32 1 5.3564 0.4074 -1.2396 33 1 5.4198 -0.6334 -3.4889 34 1 5.4200 -2.2489 -2.7416 35 1 6.5239 -3.3518 -0.8277 36 1 9.6023 -3.6946 -0.3360 37 1 8.2581 -4.6367 0.5049 38 1 7.4727 -5.5201 -1.7401 39 1 8.8164 -4.5781 -2.5816 40 1 7.6677 -0.0106 -5.4514 41 1 7.6432 1.7662 -5.5543 42 1 9.1340 0.9234 -5.0694 43 1 7.9467 1.4085 -0.9664 44 1 8.0351 3.1844 -1.0518 45 1 6.5479 2.3426 -1.5488 46 1 9.1427 5.6864 -1.9511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589052975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:27 Heat of formation + Delta-G solvation = 174.024967 kcal Electronic energy + Delta-G solvation = -26732.093300 eV Core-core repulsion = 23173.657388 eV Total energy + Delta-G solvation = -3558.435912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.59725 -37.51985 -36.68533 -35.50770 -34.28404 -32.91256 -30.64339 -29.57448 -29.03204 -28.84269 -25.73502 -24.57313 -24.18654 -23.64911 -22.48584 -21.61176 -20.06853 -19.28239 -18.69358 -17.14635 -16.58443 -16.42479 -15.86031 -15.72099 -15.24165 -15.11555 -14.76894 -14.54802 -14.46798 -14.21039 -13.78321 -13.52853 -13.22014 -12.94625 -12.48994 -12.33129 -11.93226 -11.72241 -11.61558 -11.23754 -11.15835 -11.04518 -10.91008 -10.84836 -10.75689 -10.65595 -10.62664 -10.35783 -10.31398 -10.14693 -10.12111 -10.03298 -9.83889 -9.12451 -8.53943 -8.39039 -7.91082 -7.73572 -6.09539 -4.16279 0.94248 2.02178 2.14621 2.51469 2.68002 2.93158 3.20273 3.26660 3.33592 3.36085 3.83855 3.95629 4.28739 4.32934 4.49176 4.57072 4.60323 4.72663 4.78275 4.88221 4.93912 5.06104 5.07778 5.22858 5.33291 5.51517 5.57024 5.59810 5.65677 5.73105 5.80952 5.98420 6.08298 6.17669 6.28779 6.39038 6.57174 6.70881 6.83729 6.90049 7.08601 7.25897 7.35784 7.60892 7.71493 7.87901 8.14961 8.41908 8.87187 9.20747 9.48815 10.97306 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.007247 B = 0.004632 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3862.651638 B = 6042.939496 C = 9085.283234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.179 4.179 3 C 0.021 3.979 4 S -0.219 6.219 5 C -0.110 4.110 6 C 0.138 3.862 7 N -0.469 5.469 8 C 0.189 3.811 9 C -0.080 4.080 10 C -0.150 4.150 11 C -0.160 4.160 12 N -0.287 5.287 13 N -0.315 5.315 14 C 0.386 3.614 15 N -0.473 5.473 16 C 0.050 3.950 17 C 0.227 3.773 18 H 0.023 0.977 19 C -0.129 4.129 20 C -0.512 4.512 21 H 0.067 0.933 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.900 3.100 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.224 0.776 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.002 0.998 44 H 0.092 0.908 45 H 0.029 0.971 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -15.673 3.860 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.181 4.181 3 C -0.126 4.126 4 S 0.010 5.990 5 C -0.260 4.260 6 C 0.013 3.987 7 N -0.163 5.163 8 C -0.078 4.078 9 C -0.101 4.101 10 C -0.188 4.188 11 C -0.199 4.199 12 N -0.127 5.127 13 N -0.158 5.158 14 C 0.030 3.970 15 N -0.200 5.200 16 C -0.098 4.098 17 C 0.123 3.877 18 H 0.041 0.959 19 C -0.187 4.187 20 C -0.550 4.550 21 H 0.085 0.915 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.728 3.272 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.240 0.760 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.110 0.890 45 H 0.049 0.951 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.082 -15.767 3.251 19.544 hybrid contribution -0.475 1.448 0.530 1.613 sum -11.557 -14.319 3.782 18.786 Atomic orbital electron populations 1.24875 0.95726 0.99929 0.98655 1.21758 0.92977 1.01405 1.01912 1.20136 0.88892 1.05207 0.98340 1.86922 1.03645 1.82123 1.26323 1.23818 0.93719 1.06817 1.01601 1.21280 0.75993 1.03053 0.98381 1.46257 1.07977 1.18402 1.43685 1.23514 0.87801 0.94490 1.02019 1.19985 0.99144 0.86252 1.04703 1.23009 0.99663 1.01369 0.94722 1.23063 1.03375 0.95030 0.98399 1.73905 1.16795 1.05883 1.16097 1.74747 1.17825 1.07637 1.15571 1.22866 0.84873 0.90858 0.98376 1.59274 1.59737 0.98549 1.02449 1.22217 0.99261 1.01413 0.86872 1.19398 0.94135 0.82886 0.91296 0.95892 1.21812 0.98849 1.00374 0.97687 1.21052 1.32893 0.89706 1.11392 0.91536 1.24904 0.94859 0.98976 0.95158 1.69900 1.35852 1.23441 1.23393 0.86463 0.78224 0.82237 0.80293 1.20640 1.21207 1.19766 0.75966 0.87699 0.87246 0.89544 0.87874 0.86935 0.88642 0.86332 0.87184 0.88103 0.88084 0.88243 0.93855 0.89072 0.94673 0.97930 0.88968 0.95141 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 19.25 29.55 0.57 -0.96 16 2 C -0.18 -1.91 13.35 -37.12 -0.50 -2.40 16 3 C 0.02 0.21 6.42 34.37 0.22 0.43 16 4 S -0.22 -2.51 21.70 -107.50 -2.33 -4.84 16 5 C -0.11 -1.35 6.26 37.16 0.23 -1.12 16 6 C 0.14 1.79 5.99 -4.04 -0.02 1.76 16 7 N -0.47 -7.77 2.81 -114.09 -0.32 -8.09 16 8 C 0.19 3.07 7.59 -154.02 -1.17 1.90 16 9 C -0.08 -0.91 5.94 -91.77 -0.55 -1.46 16 10 C -0.15 -1.51 10.15 -26.69 -0.27 -1.78 16 11 C -0.16 -1.53 10.24 -26.69 -0.27 -1.81 16 12 N -0.29 -5.74 11.79 32.99 0.39 -5.35 16 13 N -0.32 -7.12 11.95 30.31 0.36 -6.76 16 14 C 0.39 7.92 5.11 -318.88 -1.63 6.29 16 15 N -0.47 -10.15 4.64 -176.08 -0.82 -10.96 16 16 C 0.05 0.98 9.14 60.06 0.55 1.52 16 17 C 0.23 5.72 1.95 -68.86 -0.13 5.58 16 18 H 0.02 0.67 7.99 -51.93 -0.41 0.26 16 19 C -0.13 -3.18 8.84 37.16 0.33 -2.85 16 20 C -0.51 -13.47 7.95 -34.44 -0.27 -13.74 16 21 H 0.07 1.70 6.40 -52.49 -0.34 1.37 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 23 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 24 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.22 1.12 7.80 -54.10 -0.42 0.70 16 29 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.10 1.54 7.74 -51.92 -0.40 1.13 16 33 H 0.11 1.56 8.12 -51.93 -0.42 1.14 16 34 H 0.10 0.99 8.04 -51.93 -0.42 0.58 16 35 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.11 1.32 7.92 -51.93 -0.41 0.91 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.09 1.77 6.32 -51.93 -0.33 1.44 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.00 0.04 7.22 -51.93 -0.38 -0.33 16 44 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 45 H 0.03 0.71 7.74 -51.93 -0.40 0.30 16 46 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 401.46 15.07 6.05 6.05 Total: -1.00 -31.72 401.46 -11.25 -42.97 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.18 Total: 2.62 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.01 Total: -7.02 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.24 Total: -55.49 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.33 Total: -4.84 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.72 -11.25 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589052975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.999 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds