Wall clock time and date at job start Tue Mar 31 2020 19:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 S 1.81403 * 109.46728 * 65.14339 * 3 2 1 5 5 C 1.81407 * 102.99775 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47117 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.46918 * 180.02562 * 6 5 4 8 8 C 1.36738 * 127.13891 * 85.75486 * 7 6 5 9 9 C 1.50697 * 126.34673 * 359.94584 * 8 7 6 10 10 C 1.53004 * 117.49666 * 188.74490 * 9 8 7 11 11 C 1.53007 * 117.50104 * 120.08470 * 9 8 7 12 12 N 1.30295 * 107.30387 * 179.97438 * 8 7 6 13 13 N 1.28523 * 110.05520 * 0.02562 * 12 8 7 14 14 C 1.31218 * 109.86035 * 359.73740 * 13 12 8 15 15 N 1.38579 * 126.47183 * 180.25811 * 14 13 12 16 16 C 1.46897 * 110.99870 * 71.86761 * 15 14 13 17 17 C 1.46901 * 111.00439 * 307.91227 * 15 14 13 18 18 H 1.09000 * 109.47073 * 59.99764 * 17 15 14 19 19 C 1.53002 * 109.46677 * 300.00252 * 17 15 14 20 20 C 1.50701 * 109.47351 * 180.02562 * 17 15 14 21 21 H 1.08000 * 119.99652 * 0.02562 * 20 17 15 22 22 C 1.37874 * 120.00019 * 179.97438 * 20 17 15 23 23 N 1.31517 * 120.00027 * 0.02562 * 22 20 17 24 24 Si 1.86801 * 120.00070 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.46864 * 90.00184 * 24 22 20 26 26 H 1.48492 * 109.47153 * 210.00087 * 24 22 20 27 27 H 1.48503 * 109.46947 * 330.00490 * 24 22 20 28 28 H 4.62818 * 6.06284 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47185 * 305.14796 * 3 2 1 30 30 H 1.08993 * 109.47005 * 185.14348 * 3 2 1 31 31 H 1.08999 * 109.47029 * 59.99706 * 5 4 3 32 32 H 1.09000 * 109.47022 * 299.99912 * 5 4 3 33 33 H 1.08996 * 109.47100 * 59.99392 * 6 5 4 34 34 H 1.09000 * 109.46753 * 299.99648 * 6 5 4 35 35 H 1.09004 * 115.54979 * 334.41120 * 9 8 7 36 36 H 1.08996 * 117.50239 * 359.97438 * 10 9 8 37 37 H 1.09003 * 117.49800 * 145.01971 * 10 9 8 38 38 H 1.08995 * 117.49469 * 214.98074 * 11 9 8 39 39 H 1.08998 * 117.49519 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.47392 * 53.76852 * 16 15 14 41 41 H 1.09002 * 109.47161 * 173.76465 * 16 15 14 42 42 H 1.08998 * 109.47270 * 293.76474 * 16 15 14 43 43 H 1.08999 * 109.47208 * 60.00044 * 19 17 15 44 44 H 1.09000 * 109.46568 * 180.02562 * 19 17 15 45 45 H 1.09000 * 109.46970 * 299.99575 * 19 17 15 46 46 H 0.96999 * 119.99847 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2509 -0.7180 -1.5519 5 6 5.0534 -0.6320 -1.3661 6 6 5.7230 -1.2095 -2.6147 7 7 7.1785 -1.1406 -2.4644 8 6 7.9893 -2.0548 -1.8507 9 6 7.5510 -3.3377 -1.1926 10 6 8.5970 -4.1125 -0.3886 11 6 8.1232 -4.6456 -1.7431 12 7 9.2110 -1.6109 -1.9400 13 7 9.2271 -0.4869 -2.5629 14 6 8.0071 -0.1533 -2.9123 15 7 7.6309 0.9876 -3.6032 16 6 8.0457 0.9117 -5.0103 17 6 8.1687 2.1939 -2.9601 18 1 9.2572 2.1404 -2.9401 19 6 7.6364 2.2891 -1.5288 20 6 7.7392 3.4115 -3.7373 21 1 7.1275 3.3003 -4.6204 22 6 8.1262 4.6674 -3.3204 23 7 8.8707 4.8028 -2.2447 24 14 7.5945 6.1766 -4.2842 25 1 6.2988 6.6715 -3.7536 26 1 8.6232 7.2387 -4.1479 27 1 7.4385 5.8192 -5.7171 28 1 -1.0498 0.0001 -0.0002 29 1 3.0097 -0.5908 0.8403 30 1 3.0089 1.0243 0.0921 31 1 5.3564 -1.2078 -0.4916 32 1 5.3564 0.4074 -1.2396 33 1 5.4198 -0.6334 -3.4889 34 1 5.4200 -2.2489 -2.7416 35 1 6.5239 -3.3518 -0.8277 36 1 9.6023 -3.6946 -0.3360 37 1 8.2581 -4.6367 0.5049 38 1 7.4727 -5.5201 -1.7401 39 1 8.8164 -4.5781 -2.5816 40 1 7.6677 -0.0106 -5.4514 41 1 7.6432 1.7662 -5.5543 42 1 9.1340 0.9234 -5.0694 43 1 7.9467 1.4085 -0.9664 44 1 8.0351 3.1844 -1.0518 45 1 6.5479 2.3426 -1.5488 46 1 9.1427 5.6864 -1.9511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589052975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:26 Heat of formation + Delta-G solvation = 158.239465 kcal Electronic energy + Delta-G solvation = -26732.777811 eV Core-core repulsion = 23173.657388 eV Total energy + Delta-G solvation = -3559.120423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -44.03684 -38.98322 -37.88207 -36.75459 -34.99440 -34.89297 -31.88040 -31.41124 -30.59591 -29.58789 -27.60833 -26.25706 -25.50912 -24.80875 -23.40359 -23.18698 -21.39742 -20.76653 -19.39388 -18.59347 -18.13149 -17.75985 -17.19450 -16.95373 -16.63164 -16.43126 -16.02598 -15.56642 -15.43036 -15.38979 -15.10666 -15.00807 -14.46732 -14.23569 -14.04440 -13.77251 -13.38128 -13.08948 -12.95038 -12.74892 -12.66746 -12.58726 -12.33926 -12.25168 -12.22612 -12.11442 -11.88505 -11.70029 -11.62396 -11.38078 -11.34337 -11.21086 -11.09048 -10.91127 -10.58940 -9.86682 -9.52564 -8.79687 -8.15815 -6.30088 0.04998 0.70242 1.16945 1.42987 1.44768 1.46953 1.56024 1.74868 1.80046 2.18523 2.40649 2.94112 2.97823 3.16010 3.27707 3.30674 3.46109 3.55495 3.80098 3.93672 4.07433 4.10565 4.14782 4.16123 4.24753 4.33815 4.40036 4.58120 4.61695 4.66136 4.76524 4.81989 4.82172 4.88022 4.96263 4.98816 5.00151 5.07492 5.18417 5.32016 5.35412 5.52458 5.62381 5.84407 5.94066 6.12110 6.56708 6.58652 6.80374 7.39212 7.73416 8.91304 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.007247 B = 0.004632 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3862.651638 B = 6042.939496 C = 9085.283234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.227 4.227 3 C 0.023 3.977 4 S -0.223 6.223 5 C -0.101 4.101 6 C 0.135 3.865 7 N -0.462 5.462 8 C 0.213 3.787 9 C -0.098 4.098 10 C -0.147 4.147 11 C -0.141 4.141 12 N -0.328 5.328 13 N -0.361 5.361 14 C 0.367 3.633 15 N -0.465 5.465 16 C 0.053 3.947 17 C 0.238 3.762 18 H -0.027 1.027 19 C -0.107 4.107 20 C -0.522 4.522 21 H 0.074 0.926 22 C 0.015 3.985 23 N -0.921 5.921 24 Si 0.967 3.033 25 H -0.274 1.274 26 H -0.287 1.287 27 H -0.262 1.262 28 H 0.257 0.743 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.014 0.986 43 H -0.002 1.002 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 -17.637 3.906 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.229 4.229 3 C -0.123 4.123 4 S 0.006 5.994 5 C -0.250 4.250 6 C 0.012 3.988 7 N -0.156 5.156 8 C -0.055 4.055 9 C -0.118 4.118 10 C -0.185 4.185 11 C -0.179 4.179 12 N -0.167 5.167 13 N -0.203 5.203 14 C 0.009 3.991 15 N -0.192 5.192 16 C -0.094 4.094 17 C 0.133 3.867 18 H -0.010 1.010 19 C -0.165 4.165 20 C -0.561 4.561 21 H 0.092 0.908 22 C -0.185 4.185 23 N -0.560 5.560 24 Si 0.792 3.208 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.186 1.186 28 H 0.273 0.727 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.033 0.967 43 H 0.017 0.983 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.276 -17.757 3.285 23.020 hybrid contribution 0.454 1.933 0.575 2.067 sum -13.823 -15.825 3.860 21.363 Atomic orbital electron populations 1.25795 0.96620 0.97982 0.96602 1.22140 0.93698 1.03247 1.03780 1.20175 0.89153 1.05106 0.97912 1.86885 1.02428 1.82190 1.27915 1.23632 0.94588 1.04961 1.01809 1.21578 0.73695 1.05152 0.98424 1.46375 1.09208 1.17204 1.42792 1.24490 0.86672 0.95040 0.99289 1.20398 1.01029 0.84514 1.05906 1.23091 0.98007 1.00910 0.96478 1.23149 1.02773 0.94730 0.97257 1.73823 1.19162 1.05805 1.17918 1.74617 1.19661 1.09167 1.16889 1.22699 0.85363 0.91477 0.99524 1.59187 1.59002 0.97975 1.03007 1.22232 0.98072 1.02912 0.86219 1.19035 0.91179 0.84657 0.91865 1.00969 1.21529 0.98923 0.98791 0.97276 1.21332 1.32794 0.90263 1.11665 0.90823 1.25755 0.94747 1.01989 0.95983 1.70053 1.36967 1.24046 1.24942 0.85413 0.77766 0.78299 0.79323 1.19919 1.21315 1.18620 0.72689 0.85977 0.87804 0.87999 0.91073 0.87810 0.85072 0.83103 0.89857 0.84821 0.84369 0.90112 0.90945 0.89002 0.96690 0.98306 0.91570 0.94294 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 19.25 74.32 1.43 -0.84 16 2 C -0.23 -4.45 13.35 31.13 0.42 -4.03 16 3 C 0.02 0.44 6.42 70.18 0.45 0.89 16 4 S -0.22 -4.74 21.70 -56.49 -1.23 -5.97 16 5 C -0.10 -2.33 6.26 71.98 0.45 -1.88 16 6 C 0.13 3.26 5.99 86.38 0.52 3.78 16 7 N -0.46 -15.11 2.81 -514.87 -1.45 -16.55 16 8 C 0.21 6.78 7.59 137.64 1.04 7.82 16 9 C -0.10 -1.95 5.94 -11.54 -0.07 -2.02 16 10 C -0.15 -2.59 10.15 30.62 0.31 -2.28 16 11 C -0.14 -2.23 10.24 30.62 0.31 -1.92 16 12 N -0.33 -13.53 11.79 -49.54 -0.58 -14.11 16 13 N -0.36 -17.11 11.95 -58.01 -0.69 -17.81 16 14 C 0.37 15.49 5.11 260.11 1.33 16.81 16 15 N -0.47 -20.58 4.64 -711.00 -3.30 -23.88 16 16 C 0.05 2.12 9.14 127.69 1.17 3.29 16 17 C 0.24 12.57 1.95 44.17 0.09 12.65 16 18 H -0.03 -1.70 7.99 -2.39 -0.02 -1.72 16 19 C -0.11 -5.50 8.84 71.98 0.64 -4.87 16 20 C -0.52 -28.11 7.95 25.60 0.20 -27.90 16 21 H 0.07 3.78 6.40 -2.91 -0.02 3.77 16 22 C 0.01 0.79 5.30 84.65 0.45 1.24 16 23 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 24 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 28 H 0.26 1.62 7.80 -4.43 -0.03 1.59 16 29 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 2.12 7.74 -2.39 -0.02 2.11 16 33 H 0.10 2.75 8.12 -2.39 -0.02 2.73 16 34 H 0.13 2.27 8.04 -2.39 -0.02 2.25 16 35 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 1.96 7.92 -2.39 -0.02 1.94 16 37 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 41 H 0.09 3.60 6.32 -2.39 -0.02 3.59 16 42 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.00 -0.11 7.22 -2.39 -0.02 -0.12 16 44 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 45 H 0.04 1.87 7.74 -2.39 -0.02 1.85 16 46 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -73.52 401.46 4.72 -68.80 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.96 Total: 17.26 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 8.74 Total: 0.73 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -5.78 Total: -125.64 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -1.23 Total: -5.97 kcal Total: -73.52 4.72 -68.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589052975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.044 kcal (2) G-P(sol) polarization free energy of solvation -73.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds