Wall clock time and date at job start Tue Mar 31 2020 22:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47136 * 269.99636 * 3 2 1 5 5 H 1.48503 * 109.47010 * 29.99702 * 3 2 1 6 6 H 1.48500 * 109.46954 * 149.99535 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47042 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99515 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00543 * 0.26795 * 13 12 11 15 15 N 1.34784 * 119.99547 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99971 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47267 * 180.02562 * 16 15 13 18 18 H 1.09006 * 109.47110 * 304.99985 * 17 16 15 19 19 C 1.53001 * 109.47148 * 184.99978 * 17 16 15 20 20 C 1.50701 * 109.46966 * 174.99935 * 19 17 16 21 21 C 1.38237 * 119.99809 * 269.72478 * 20 19 17 22 22 C 1.38245 * 119.99877 * 179.76683 * 21 20 19 23 23 C 1.38230 * 119.99473 * 0.51111 * 22 21 20 24 24 C 1.38231 * 120.00627 * 359.74363 * 23 22 21 25 25 C 1.38236 * 120.00010 * 90.00369 * 20 19 17 26 26 C 1.50696 * 109.47407 * 65.00131 * 17 16 15 27 27 O 1.20833 * 119.99690 * 0.02562 * 26 17 16 28 28 O 1.34228 * 120.00310 * 180.02562 * 26 17 16 29 29 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 32 32 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 33 33 H 1.09000 * 109.46870 * 300.00068 * 10 9 7 34 34 H 1.08996 * 109.47407 * 59.99517 * 11 10 9 35 35 H 1.09000 * 109.46986 * 299.99746 * 11 10 9 36 36 H 0.96999 * 120.00076 * 359.97438 * 12 11 10 37 37 H 0.96999 * 120.00044 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.47024 * 300.00310 * 16 15 13 39 39 H 1.09005 * 109.47136 * 59.99926 * 16 15 13 40 40 H 1.08994 * 109.47303 * 295.00169 * 19 17 16 41 41 H 1.08998 * 109.46940 * 55.00238 * 19 17 16 42 42 H 1.07997 * 120.00325 * 0.02562 * 21 20 19 43 43 H 1.07993 * 120.00265 * 180.23322 * 22 21 20 44 44 H 1.08009 * 119.99603 * 179.72818 * 23 22 21 45 45 H 1.08003 * 120.00295 * 179.97438 * 24 23 22 46 46 H 1.07994 * 120.00235 * 359.97438 * 25 20 19 47 47 H 0.96705 * 116.99952 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0399 -4.0179 0.0015 13 6 7.3649 -4.2641 0.0029 14 8 8.1550 -3.3400 0.0097 15 7 7.8141 -5.5348 0.0027 16 6 9.2545 -5.8025 0.0037 17 6 9.4923 -7.3139 0.0026 18 1 8.9658 -7.7651 0.8437 19 6 10.9910 -7.5944 0.1293 20 6 11.2155 -9.0796 0.2518 21 6 11.2394 -9.6744 1.4995 22 6 11.4404 -11.0375 1.6116 23 6 11.6281 -11.8040 0.4767 24 6 11.6095 -11.2084 -0.7706 25 6 11.4032 -9.8462 -0.8831 26 6 8.9783 -7.9024 -1.2859 27 8 8.4739 -7.1863 -2.1183 28 8 9.0808 -9.2221 -1.5090 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8912 31 1 3.8752 -0.6805 -0.8888 32 1 3.6585 -3.1502 -0.8892 33 1 3.6578 -3.1506 0.8907 34 1 5.9142 -2.1230 0.8926 35 1 5.9156 -2.1225 -0.8873 36 1 5.4095 -4.7551 0.0008 37 1 7.1838 -6.2721 0.0020 38 1 9.7062 -5.3634 -0.8858 39 1 9.7050 -5.3641 0.8942 40 1 11.5067 -7.2207 -0.7552 41 1 11.3807 -7.0938 1.0157 42 1 11.0968 -9.0748 2.3864 43 1 11.4554 -11.5028 2.5860 44 1 11.7896 -12.8683 0.5645 45 1 11.7565 -11.8073 -1.6573 46 1 11.3886 -9.3809 -1.8575 47 1 8.7366 -9.5532 -2.3499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:13 Heat of formation + Delta-G solvation = -112.085091 kcal Electronic energy + Delta-G solvation = -27483.613956 eV Core-core repulsion = 23437.725758 eV Total energy + Delta-G solvation = -4045.888197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 21.44 seconds Orbital eigenvalues (eV) -41.13852 -39.71150 -39.45526 -36.83779 -36.05896 -35.33157 -33.87725 -33.20539 -31.48785 -31.26120 -30.56834 -27.36301 -26.01201 -24.95001 -22.99628 -22.79379 -21.84696 -20.99549 -20.70168 -20.17192 -18.52140 -18.07065 -17.44762 -17.17155 -16.81921 -16.44811 -15.84844 -15.53237 -15.46779 -15.33221 -14.56653 -14.39611 -14.25657 -13.92373 -13.88505 -13.77270 -13.61456 -13.39858 -12.83291 -12.67154 -12.63413 -12.50705 -12.02348 -11.90212 -11.82815 -11.81335 -11.39732 -11.33730 -11.02686 -10.86270 -10.82096 -10.25696 -9.97550 -9.79359 -9.65261 -9.24370 -9.22449 -9.19951 -9.08093 -8.62377 -8.52981 -6.04037 -4.02511 0.93974 1.05172 1.80334 2.57739 2.75418 3.33774 3.37863 3.40659 3.41061 3.45932 3.91541 4.24258 4.32246 4.46939 4.49410 4.54512 4.59335 4.63143 4.74260 4.85744 4.96340 5.12102 5.25794 5.27168 5.30270 5.37205 5.52716 5.60835 5.63564 5.66376 5.74319 6.07768 6.08506 6.10779 6.14924 6.20369 6.36530 6.42845 6.51491 6.62396 6.73344 6.86882 7.01169 7.27112 7.40395 7.50327 7.78439 8.12440 8.52779 8.73949 8.99911 9.58378 11.09201 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.001658 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.534535 B =16885.614229 C =17072.032034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.741 5.741 13 C 0.705 3.295 14 O -0.595 6.595 15 N -0.745 5.745 16 C 0.154 3.846 17 C -0.087 4.087 18 H 0.117 0.883 19 C -0.070 4.070 20 C -0.089 4.089 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.078 4.078 26 C 0.474 3.526 27 O -0.499 6.499 28 O -0.504 6.504 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.393 0.607 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.889 -27.027 1.088 38.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.010 3.990 12 N -0.395 5.395 13 C 0.405 3.595 14 O -0.473 6.473 15 N -0.401 5.401 16 C 0.029 3.971 17 C -0.107 4.107 18 H 0.135 0.865 19 C -0.108 4.108 20 C -0.089 4.089 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.096 4.096 26 C 0.315 3.685 27 O -0.385 6.385 28 O -0.315 6.315 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.228 0.772 37 H 0.226 0.774 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 27.476 -25.653 1.231 37.610 hybrid contribution -0.641 -0.165 -0.645 0.924 sum 26.835 -25.818 0.585 37.243 Atomic orbital electron populations 1.69915 1.06317 1.26921 1.51106 1.25029 0.94749 0.99241 0.94477 0.86771 0.80420 0.83492 0.78598 1.20254 1.21391 1.18848 1.21107 0.89353 0.94497 1.51000 0.91036 1.19503 0.97203 0.91503 0.96702 1.21706 0.90760 1.00969 1.01678 1.21508 0.95630 0.80061 1.01806 1.45302 1.04779 1.10063 1.79387 1.15896 0.83028 0.82810 0.77785 1.90909 1.55106 1.43154 1.58153 1.44913 1.07255 1.06534 1.81440 1.21020 0.81584 0.90825 1.03631 1.21468 0.98469 0.96289 0.94428 0.86505 1.20507 0.92237 0.93200 1.04828 1.19636 1.00922 0.94731 0.93586 1.21033 1.00051 0.95005 0.96822 1.21105 1.00568 0.94015 0.98567 1.21147 1.00038 0.99750 0.92798 1.21084 1.00721 0.94898 0.97448 1.20873 0.97304 0.93790 0.97670 1.23348 0.75826 0.80346 0.88935 1.90826 1.40465 1.61111 1.46145 1.84771 1.76478 1.25362 1.44923 0.92733 0.96258 0.96699 0.92166 0.92157 0.91948 0.91999 0.77212 0.77412 0.90564 0.89892 0.89862 0.88576 0.86070 0.86241 0.86409 0.86357 0.86627 0.73664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.17 5.27 -26.73 -0.14 -2.31 16 11 C 0.13 2.33 5.67 -4.04 -0.02 2.30 16 12 N -0.74 -10.92 5.56 -65.22 -0.36 -11.28 16 13 C 0.71 10.91 8.57 -86.92 -0.74 10.16 16 14 O -0.59 -11.58 16.34 5.29 0.09 -11.50 16 15 N -0.75 -8.25 4.81 -65.23 -0.31 -8.56 16 16 C 0.15 1.38 4.63 -4.05 -0.02 1.36 16 17 C -0.09 -0.52 2.36 -91.78 -0.22 -0.73 16 18 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 19 C -0.07 -0.33 4.83 -27.88 -0.13 -0.47 16 20 C -0.09 -0.50 4.55 -104.62 -0.48 -0.98 16 21 C -0.11 -0.62 9.70 -39.58 -0.38 -1.01 16 22 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 23 C -0.12 -0.67 10.05 -39.59 -0.40 -1.07 16 24 C -0.12 -0.69 10.05 -39.58 -0.40 -1.08 16 25 C -0.08 -0.45 6.89 -39.58 -0.27 -0.72 16 26 C 0.47 3.52 7.20 36.00 0.26 3.78 16 27 O -0.50 -5.65 16.05 -18.76 -0.30 -5.96 16 28 O -0.50 -2.61 9.29 -39.25 -0.36 -2.98 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 31 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.39 4.74 8.49 -40.82 -0.35 4.40 16 37 H 0.39 3.51 8.17 -40.82 -0.33 3.18 16 38 H 0.08 0.83 7.95 -51.93 -0.41 0.42 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 41 H 0.10 0.33 8.08 -51.93 -0.42 -0.09 16 42 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.12 0.47 8.06 -52.48 -0.42 0.05 16 45 H 0.12 0.47 8.06 -52.48 -0.42 0.05 16 46 H 0.12 0.58 7.58 -52.49 -0.40 0.19 16 47 H 0.40 0.86 9.10 45.56 0.41 1.28 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -37.48 392.82 -9.62 -47.09 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.50 Total: 2.77 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -3.89 Total: -5.62 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.10 Total: -47.08 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.58 Total: -20.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.48 -9.62 -47.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.990 kcal (2) G-P(sol) polarization free energy of solvation -37.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.44 seconds