Wall clock time and date at job start Tue Mar 31 2020 22:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47136 * 269.99636 * 3 2 1 5 5 H 1.48503 * 109.47010 * 29.99702 * 3 2 1 6 6 H 1.48500 * 109.46954 * 149.99535 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47042 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99515 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00543 * 0.26795 * 13 12 11 15 15 N 1.34784 * 119.99547 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99971 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47267 * 180.02562 * 16 15 13 18 18 H 1.09006 * 109.47110 * 304.99985 * 17 16 15 19 19 C 1.53001 * 109.47148 * 184.99978 * 17 16 15 20 20 C 1.50701 * 109.46966 * 174.99935 * 19 17 16 21 21 C 1.38237 * 119.99809 * 269.72478 * 20 19 17 22 22 C 1.38245 * 119.99877 * 179.76683 * 21 20 19 23 23 C 1.38230 * 119.99473 * 0.51111 * 22 21 20 24 24 C 1.38231 * 120.00627 * 359.74363 * 23 22 21 25 25 C 1.38236 * 120.00010 * 90.00369 * 20 19 17 26 26 C 1.50696 * 109.47407 * 65.00131 * 17 16 15 27 27 O 1.20833 * 119.99690 * 0.02562 * 26 17 16 28 28 O 1.34228 * 120.00310 * 180.02562 * 26 17 16 29 29 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 32 32 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 33 33 H 1.09000 * 109.46870 * 300.00068 * 10 9 7 34 34 H 1.08996 * 109.47407 * 59.99517 * 11 10 9 35 35 H 1.09000 * 109.46986 * 299.99746 * 11 10 9 36 36 H 0.96999 * 120.00076 * 359.97438 * 12 11 10 37 37 H 0.96999 * 120.00044 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.47024 * 300.00310 * 16 15 13 39 39 H 1.09005 * 109.47136 * 59.99926 * 16 15 13 40 40 H 1.08994 * 109.47303 * 295.00169 * 19 17 16 41 41 H 1.08998 * 109.46940 * 55.00238 * 19 17 16 42 42 H 1.07997 * 120.00325 * 0.02562 * 21 20 19 43 43 H 1.07993 * 120.00265 * 180.23322 * 22 21 20 44 44 H 1.08009 * 119.99603 * 179.72818 * 23 22 21 45 45 H 1.08003 * 120.00295 * 179.97438 * 24 23 22 46 46 H 1.07994 * 120.00235 * 359.97438 * 25 20 19 47 47 H 0.96705 * 116.99952 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0399 -4.0179 0.0015 13 6 7.3649 -4.2641 0.0029 14 8 8.1550 -3.3400 0.0097 15 7 7.8141 -5.5348 0.0027 16 6 9.2545 -5.8025 0.0037 17 6 9.4923 -7.3139 0.0026 18 1 8.9658 -7.7651 0.8437 19 6 10.9910 -7.5944 0.1293 20 6 11.2155 -9.0796 0.2518 21 6 11.2394 -9.6744 1.4995 22 6 11.4404 -11.0375 1.6116 23 6 11.6281 -11.8040 0.4767 24 6 11.6095 -11.2084 -0.7706 25 6 11.4032 -9.8462 -0.8831 26 6 8.9783 -7.9024 -1.2859 27 8 8.4739 -7.1863 -2.1183 28 8 9.0808 -9.2221 -1.5090 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8912 31 1 3.8752 -0.6805 -0.8888 32 1 3.6585 -3.1502 -0.8892 33 1 3.6578 -3.1506 0.8907 34 1 5.9142 -2.1230 0.8926 35 1 5.9156 -2.1225 -0.8873 36 1 5.4095 -4.7551 0.0008 37 1 7.1838 -6.2721 0.0020 38 1 9.7062 -5.3634 -0.8858 39 1 9.7050 -5.3641 0.8942 40 1 11.5067 -7.2207 -0.7552 41 1 11.3807 -7.0938 1.0157 42 1 11.0968 -9.0748 2.3864 43 1 11.4554 -11.5028 2.5860 44 1 11.7896 -12.8683 0.5645 45 1 11.7565 -11.8073 -1.6573 46 1 11.3886 -9.3809 -1.8575 47 1 8.7366 -9.5532 -2.3499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:35 Heat of formation + Delta-G solvation = -138.207653 kcal Electronic energy + Delta-G solvation = -27484.746715 eV Core-core repulsion = 23437.725758 eV Total energy + Delta-G solvation = -4047.020957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 31.94 seconds Orbital eigenvalues (eV) -41.76457 -40.82584 -39.87592 -37.55735 -36.97809 -36.47946 -35.14510 -34.63159 -33.19449 -31.63123 -31.28297 -28.95070 -26.78779 -25.63094 -24.42277 -23.36549 -22.40231 -22.23347 -21.81969 -21.20985 -19.27144 -19.07387 -18.86201 -17.98028 -17.71713 -17.28807 -16.81883 -16.63331 -16.27998 -15.92011 -15.78719 -15.68664 -15.33147 -15.21755 -14.75108 -14.63150 -14.21659 -14.14761 -13.92343 -13.81590 -13.75695 -13.36322 -13.11632 -12.96699 -12.72272 -12.68401 -12.45090 -12.38386 -11.92426 -11.77893 -11.77383 -11.75436 -11.58806 -11.41188 -11.33397 -11.28741 -10.75602 -10.37817 -9.75342 -9.62884 -9.48103 -8.28935 -6.32780 0.54475 0.66160 1.23110 1.37823 1.39068 1.51368 1.70874 2.09989 2.18315 2.37151 2.98862 3.06852 3.29697 3.37066 3.89502 4.02422 4.08449 4.11653 4.16108 4.22979 4.28694 4.39985 4.41344 4.50141 4.52102 4.69934 4.76162 4.78025 4.91408 4.92224 4.94415 4.98526 5.04712 5.26296 5.30188 5.41462 5.45427 5.53651 5.57032 5.64907 5.65755 5.70267 5.77224 5.81633 5.96753 6.25761 6.28032 6.74954 7.02405 7.06644 7.32007 7.57330 8.87431 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.001658 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.534535 B =16885.614229 C =17072.032034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.012 4.012 10 C -0.099 4.099 11 C 0.147 3.853 12 N -0.734 5.734 13 C 0.701 3.299 14 O -0.637 6.637 15 N -0.729 5.729 16 C 0.152 3.848 17 C -0.074 4.074 18 H 0.137 0.863 19 C -0.065 4.065 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.136 4.136 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.088 4.088 26 C 0.482 3.518 27 O -0.543 6.543 28 O -0.496 6.496 29 H 0.266 0.734 30 H 0.023 0.977 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.409 0.591 37 H 0.405 0.595 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.118 0.882 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.765 -27.864 1.778 40.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.050 4.050 10 C -0.137 4.137 11 C 0.022 3.978 12 N -0.390 5.390 13 C 0.400 3.600 14 O -0.519 6.519 15 N -0.385 5.385 16 C 0.028 3.972 17 C -0.094 4.094 18 H 0.155 0.845 19 C -0.103 4.103 20 C -0.095 4.095 21 C -0.137 4.137 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.106 4.106 26 C 0.325 3.675 27 O -0.433 6.433 28 O -0.308 6.308 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.245 0.755 37 H 0.240 0.760 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.136 0.864 47 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 29.362 -26.589 1.921 39.658 hybrid contribution -1.237 -0.082 -0.878 1.519 sum 28.125 -26.671 1.043 38.774 Atomic orbital electron populations 1.70059 1.08207 1.28120 1.52692 1.25983 0.95601 1.03432 0.94182 0.85694 0.79571 0.78475 0.79156 1.19365 1.20918 1.17043 1.21468 0.91904 0.93273 1.50300 0.94464 1.19465 0.94057 0.94600 0.96880 1.21475 0.92006 0.98168 1.02088 1.21142 0.93985 0.81463 1.01163 1.45053 1.05111 1.09524 1.79294 1.16065 0.82674 0.83621 0.77598 1.90879 1.56095 1.44792 1.60131 1.44821 1.08537 1.05356 1.79765 1.21137 0.80054 0.92942 1.03094 1.21394 0.99583 0.94041 0.94357 0.84538 1.20505 0.91132 0.92977 1.05673 1.19724 1.01087 0.94975 0.93667 1.21273 0.99806 0.95249 0.97351 1.21367 1.00489 0.94327 0.99233 1.21400 0.99981 1.00579 0.92911 1.21299 1.00674 0.95111 0.98034 1.21008 0.97585 0.94041 0.97977 1.23567 0.74630 0.80569 0.88739 1.90820 1.42687 1.62147 1.47676 1.84746 1.76027 1.24151 1.45906 0.92516 0.95871 0.96281 0.92004 0.91574 0.92383 0.92977 0.75525 0.75962 0.92648 0.88919 0.90009 0.86829 0.84598 0.85039 0.85240 0.85258 0.86385 0.72028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 2 C 0.00 0.29 5.47 84.66 0.46 0.75 16 3 Si 0.95 44.93 27.47 68.60 1.88 46.82 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.53 -30.62 9.66 25.60 0.25 -30.37 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 11 C 0.15 4.94 5.67 86.38 0.49 5.43 16 12 N -0.73 -20.60 5.56 -478.53 -2.66 -23.26 16 13 C 0.70 20.90 8.57 179.05 1.53 22.43 16 14 O -0.64 -24.47 16.34 -3.98 -0.07 -24.54 16 15 N -0.73 -15.06 4.81 -478.54 -2.30 -17.36 16 16 C 0.15 2.52 4.63 86.38 0.40 2.92 16 17 C -0.07 -0.73 2.36 -11.54 -0.03 -0.76 16 18 H 0.14 0.88 8.14 -2.38 -0.02 0.86 16 19 C -0.07 -0.48 4.83 29.85 0.14 -0.34 16 20 C -0.09 -0.88 4.55 -19.86 -0.09 -0.97 16 21 C -0.12 -1.07 9.70 22.27 0.22 -0.86 16 22 C -0.14 -1.30 10.05 22.27 0.22 -1.07 16 23 C -0.13 -1.27 10.05 22.27 0.22 -1.04 16 24 C -0.13 -1.29 10.05 22.27 0.22 -1.07 16 25 C -0.09 -0.88 6.89 22.27 0.15 -0.73 16 26 C 0.48 6.46 7.20 71.23 0.51 6.97 16 27 O -0.54 -11.94 16.05 21.94 0.35 -11.59 16 28 O -0.50 -4.29 9.29 -51.40 -0.48 -4.76 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.02 1.06 7.20 -2.38 -0.02 1.04 16 31 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.41 9.07 8.49 -92.71 -0.79 8.29 16 37 H 0.41 6.44 8.17 -92.71 -0.76 5.68 16 38 H 0.06 1.19 7.95 -2.38 -0.02 1.17 16 39 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 41 H 0.11 0.47 8.08 -2.39 -0.02 0.46 16 42 H 0.14 0.75 8.06 -2.91 -0.02 0.72 16 43 H 0.13 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.13 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.13 0.86 8.06 -2.91 -0.02 0.84 16 46 H 0.12 1.05 7.58 -2.91 -0.02 1.03 16 47 H 0.42 1.14 9.10 -74.05 -0.67 0.46 16 Total: -1.00 -81.37 392.82 0.75 -80.62 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -1.27 Total: 16.32 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.00 Total: -2.70 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.66 Total: -100.17 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.19 Total: -40.89 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Total: -81.37 0.75 -80.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.589 kcal (2) G-P(sol) polarization free energy of solvation -81.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 31.94 seconds