Wall clock time and date at job start Tue Mar 31 2020 22:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99692 * 2 1 4 4 H 1.48493 * 109.47072 * 269.99368 * 3 2 1 5 5 H 1.48496 * 109.47241 * 29.99701 * 3 2 1 6 6 H 1.48507 * 109.46923 * 149.99607 * 3 2 1 7 7 C 1.37878 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00232 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47415 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.47258 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99926 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99876 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00203 * 179.97438 * 13 12 11 16 16 C 1.46495 * 120.00349 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47426 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.47193 * 55.00057 * 17 16 15 19 19 C 1.52996 * 109.47342 * 175.00321 * 17 16 15 20 20 C 1.50702 * 109.47292 * 185.00182 * 19 17 16 21 21 C 1.38238 * 119.99575 * 269.73060 * 20 19 17 22 22 C 1.38235 * 119.99581 * 179.76633 * 21 20 19 23 23 C 1.38241 * 120.00041 * 0.49987 * 22 21 20 24 24 C 1.38233 * 119.99961 * 359.74977 * 23 22 21 25 25 C 1.38229 * 119.99907 * 359.97438 * 24 23 22 26 26 C 1.50706 * 109.46819 * 295.00385 * 17 16 15 27 27 O 1.20825 * 119.99859 * 239.99256 * 26 17 16 28 28 O 1.34224 * 120.00295 * 60.00215 * 26 17 16 29 29 H 0.97000 * 119.99983 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47191 * 59.99717 * 9 7 2 31 31 H 1.09005 * 109.47360 * 299.99854 * 9 7 2 32 32 H 1.09001 * 109.47394 * 59.99712 * 10 9 7 33 33 H 1.09005 * 109.47149 * 300.00456 * 10 9 7 34 34 H 1.08992 * 109.47353 * 59.99663 * 11 10 9 35 35 H 1.09005 * 109.47015 * 299.99656 * 11 10 9 36 36 H 0.96997 * 119.99853 * 359.97438 * 12 11 10 37 37 H 0.97005 * 119.99821 * 0.02562 * 15 13 12 38 38 H 1.08998 * 109.47206 * 60.00235 * 16 15 13 39 39 H 1.09004 * 109.47099 * 300.00505 * 16 15 13 40 40 H 1.09004 * 109.47090 * 304.99490 * 19 17 16 41 41 H 1.08999 * 109.47308 * 65.00121 * 19 17 16 42 42 H 1.07997 * 119.99995 * 359.97438 * 21 20 19 43 43 H 1.08002 * 120.00185 * 180.22722 * 22 21 20 44 44 H 1.08002 * 119.99748 * 179.72542 * 23 22 21 45 45 H 1.08005 * 119.99877 * 179.97438 * 24 23 22 46 46 H 1.08003 * 120.00105 * 179.97438 * 25 24 23 47 47 H 0.96700 * 117.00196 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 7 2.4325 -6.1006 0.0018 13 6 1.9832 -7.3713 0.0019 14 8 0.7878 -7.5934 0.0010 15 7 2.8590 -8.3957 0.0020 16 6 2.3708 -9.7769 0.0026 17 6 3.5607 -10.7385 0.0032 18 1 4.2137 -10.5080 0.8449 19 6 3.0542 -12.1767 0.1295 20 6 4.2280 -13.1136 0.2536 21 6 4.7959 -13.6640 -0.8802 22 6 5.8756 -14.5197 -0.7667 23 6 6.3810 -14.8331 0.4813 24 6 5.8098 -14.2868 1.6154 25 6 4.7337 -13.4267 1.5015 26 6 4.3289 -10.5878 -1.2846 27 8 4.4581 -11.5336 -2.0252 28 8 4.8698 -9.4029 -1.6087 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8903 32 1 2.8713 -3.6039 0.8922 33 1 2.8727 -3.6047 -0.8877 34 1 0.8547 -5.0450 -0.8894 35 1 0.8528 -5.0447 0.8905 36 1 3.3861 -5.9233 0.0021 37 1 3.8127 -8.2184 0.0023 38 1 1.7649 -9.9485 -0.8870 39 1 1.7654 -9.9478 0.8929 40 1 2.4247 -12.2637 1.0152 41 1 2.4739 -12.4366 -0.7557 42 1 4.3981 -13.4228 -1.8548 43 1 6.3217 -14.9468 -1.6527 44 1 7.2218 -15.5051 0.5702 45 1 6.2044 -14.5320 2.5904 46 1 4.2872 -13.0001 2.3876 47 1 5.3537 -9.3551 -2.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:52 Heat of formation + Delta-G solvation = -114.614475 kcal Electronic energy + Delta-G solvation = -27423.786695 eV Core-core repulsion = 23377.788816 eV Total energy + Delta-G solvation = -4045.997880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.23 seconds Orbital eigenvalues (eV) -41.14885 -39.70895 -39.37238 -36.67244 -36.30363 -35.22528 -33.72562 -33.22775 -31.36577 -31.15771 -30.46776 -27.01968 -25.95736 -24.82771 -22.98484 -22.90308 -21.91823 -20.89808 -20.63668 -20.29997 -18.74259 -17.96004 -17.54498 -17.19480 -16.55323 -16.10053 -15.74175 -15.53157 -15.38661 -15.18641 -14.55777 -14.44015 -14.28724 -14.10335 -13.94010 -13.64756 -13.52224 -13.36902 -12.74332 -12.59028 -12.35226 -12.26175 -12.07775 -11.86502 -11.79583 -11.68280 -11.32345 -11.17157 -10.90098 -10.71217 -10.67055 -10.58740 -10.12462 -9.84730 -9.43780 -9.23968 -9.18773 -9.11829 -9.01098 -8.59363 -8.36518 -6.01175 -4.04230 0.99077 1.12920 1.80670 2.56272 2.76707 3.30991 3.37390 3.37460 3.40087 3.46419 4.04338 4.19642 4.41990 4.44443 4.55799 4.58667 4.64118 4.72378 4.85277 4.92856 5.04581 5.20754 5.31118 5.34576 5.36761 5.41898 5.50055 5.70298 5.72729 5.78982 5.83035 6.08392 6.17224 6.19722 6.32720 6.36019 6.38079 6.54607 6.63837 6.72836 6.81727 7.03579 7.08165 7.52176 7.64760 7.77726 7.97824 8.16166 8.38772 8.75569 9.02496 9.59856 11.10049 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.001617 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.755041 B =17315.492843 C =17546.389979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.740 5.740 13 C 0.701 3.299 14 O -0.595 6.595 15 N -0.750 5.750 16 C 0.149 3.851 17 C -0.087 4.087 18 H 0.117 0.883 19 C -0.063 4.063 20 C -0.098 4.098 21 C -0.088 4.088 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.114 4.114 26 C 0.483 3.517 27 O -0.504 6.504 28 O -0.514 6.514 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.394 0.606 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.144 0.856 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.317 -30.692 0.648 33.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.401 3.599 14 O -0.473 6.473 15 N -0.408 5.408 16 C 0.024 3.976 17 C -0.107 4.107 18 H 0.135 0.865 19 C -0.101 4.101 20 C -0.098 4.098 21 C -0.106 4.106 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.148 4.148 25 C -0.132 4.132 26 C 0.325 3.675 27 O -0.392 6.392 28 O -0.327 6.327 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.227 0.773 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.162 0.838 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 11.843 -31.031 0.814 33.224 hybrid contribution 1.842 1.140 -0.561 2.238 sum 13.685 -29.891 0.253 32.875 Atomic orbital electron populations 1.69967 1.06041 1.26658 1.50557 1.25029 0.94856 0.99279 0.95303 0.86583 0.79787 0.83469 0.78070 1.20687 1.21217 1.19927 1.21208 0.92989 0.90962 1.50919 0.92656 1.19033 0.93873 0.90815 0.97707 1.21888 0.99780 0.93338 1.00828 1.21512 0.91291 0.84144 1.01879 1.45366 1.10489 1.04391 1.79189 1.15970 0.85172 0.80803 0.77963 1.90925 1.14157 1.84181 1.58038 1.45096 1.09503 1.04636 1.81592 1.21040 0.93607 0.79081 1.03863 1.21408 0.97366 0.97634 0.94243 0.86514 1.20451 0.95855 0.89142 1.04670 1.19742 0.97740 0.98931 0.93392 1.21607 0.95278 0.94212 0.99462 1.21236 0.97452 0.98844 0.97371 1.21190 0.99880 0.99919 0.92871 1.21096 0.96928 0.98214 0.98515 1.21089 0.96846 0.98387 0.96918 1.23354 0.76257 0.79740 0.88121 1.90648 1.57254 1.39382 1.51897 1.84459 1.66341 1.36261 1.45605 0.92943 0.96238 0.96222 0.92757 0.92784 0.91984 0.91935 0.77254 0.76354 0.90955 0.89723 0.88792 0.89351 0.83815 0.86359 0.86433 0.86238 0.86052 0.72778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.33 5.27 -26.74 -0.14 -2.47 16 11 C 0.13 2.38 5.67 -4.04 -0.02 2.36 16 12 N -0.74 -10.52 5.56 -65.23 -0.36 -10.89 16 13 C 0.70 10.36 8.57 -86.92 -0.74 9.62 16 14 O -0.59 -11.36 16.34 5.29 0.09 -11.28 16 15 N -0.75 -7.53 5.06 -65.23 -0.33 -7.86 16 16 C 0.15 1.24 5.05 -4.05 -0.02 1.22 16 17 C -0.09 -0.54 2.36 -91.77 -0.22 -0.76 16 18 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 19 C -0.06 -0.38 4.60 -27.88 -0.13 -0.51 16 20 C -0.10 -0.73 4.84 -104.62 -0.51 -1.24 16 21 C -0.09 -0.75 7.93 -39.58 -0.31 -1.07 16 22 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.13 -0.90 10.05 -39.59 -0.40 -1.30 16 25 C -0.11 -0.79 9.70 -39.59 -0.38 -1.17 16 26 C 0.48 3.63 7.37 36.01 0.27 3.90 16 27 O -0.50 -4.76 12.36 -18.75 -0.23 -4.99 16 28 O -0.51 -3.07 11.42 -39.24 -0.45 -3.51 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.39 4.46 8.49 -40.82 -0.35 4.12 16 37 H 0.40 3.18 6.96 -40.82 -0.28 2.89 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.09 0.57 7.90 -51.93 -0.41 0.16 16 42 H 0.14 1.33 5.86 -52.49 -0.31 1.02 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 46 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 47 H 0.41 1.13 9.10 45.56 0.41 1.54 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -35.57 393.89 -9.98 -45.55 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.39 Total: 3.66 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.96 Total: -7.01 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.04 Total: -44.75 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.59 Total: -19.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.57 -9.98 -45.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.063 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.23 seconds