Wall clock time and date at job start Tue Mar 31 2020 22:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99692 * 2 1 4 4 H 1.48493 * 109.47072 * 269.99368 * 3 2 1 5 5 H 1.48496 * 109.47241 * 29.99701 * 3 2 1 6 6 H 1.48507 * 109.46923 * 149.99607 * 3 2 1 7 7 C 1.37878 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00232 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47415 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.47258 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99926 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99876 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00203 * 179.97438 * 13 12 11 16 16 C 1.46495 * 120.00349 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47426 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.47193 * 55.00057 * 17 16 15 19 19 C 1.52996 * 109.47342 * 175.00321 * 17 16 15 20 20 C 1.50702 * 109.47292 * 185.00182 * 19 17 16 21 21 C 1.38238 * 119.99575 * 269.73060 * 20 19 17 22 22 C 1.38235 * 119.99581 * 179.76633 * 21 20 19 23 23 C 1.38241 * 120.00041 * 0.49987 * 22 21 20 24 24 C 1.38233 * 119.99961 * 359.74977 * 23 22 21 25 25 C 1.38229 * 119.99907 * 359.97438 * 24 23 22 26 26 C 1.50706 * 109.46819 * 295.00385 * 17 16 15 27 27 O 1.20825 * 119.99859 * 239.99256 * 26 17 16 28 28 O 1.34224 * 120.00295 * 60.00215 * 26 17 16 29 29 H 0.97000 * 119.99983 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47191 * 59.99717 * 9 7 2 31 31 H 1.09005 * 109.47360 * 299.99854 * 9 7 2 32 32 H 1.09001 * 109.47394 * 59.99712 * 10 9 7 33 33 H 1.09005 * 109.47149 * 300.00456 * 10 9 7 34 34 H 1.08992 * 109.47353 * 59.99663 * 11 10 9 35 35 H 1.09005 * 109.47015 * 299.99656 * 11 10 9 36 36 H 0.96997 * 119.99853 * 359.97438 * 12 11 10 37 37 H 0.97005 * 119.99821 * 0.02562 * 15 13 12 38 38 H 1.08998 * 109.47206 * 60.00235 * 16 15 13 39 39 H 1.09004 * 109.47099 * 300.00505 * 16 15 13 40 40 H 1.09004 * 109.47090 * 304.99490 * 19 17 16 41 41 H 1.08999 * 109.47308 * 65.00121 * 19 17 16 42 42 H 1.07997 * 119.99995 * 359.97438 * 21 20 19 43 43 H 1.08002 * 120.00185 * 180.22722 * 22 21 20 44 44 H 1.08002 * 119.99748 * 179.72542 * 23 22 21 45 45 H 1.08005 * 119.99877 * 179.97438 * 24 23 22 46 46 H 1.08003 * 120.00105 * 179.97438 * 25 24 23 47 47 H 0.96700 * 117.00196 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 7 2.4325 -6.1006 0.0018 13 6 1.9832 -7.3713 0.0019 14 8 0.7878 -7.5934 0.0010 15 7 2.8590 -8.3957 0.0020 16 6 2.3708 -9.7769 0.0026 17 6 3.5607 -10.7385 0.0032 18 1 4.2137 -10.5080 0.8449 19 6 3.0542 -12.1767 0.1295 20 6 4.2280 -13.1136 0.2536 21 6 4.7959 -13.6640 -0.8802 22 6 5.8756 -14.5197 -0.7667 23 6 6.3810 -14.8331 0.4813 24 6 5.8098 -14.2868 1.6154 25 6 4.7337 -13.4267 1.5015 26 6 4.3289 -10.5878 -1.2846 27 8 4.4581 -11.5336 -2.0252 28 8 4.8698 -9.4029 -1.6087 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8903 32 1 2.8713 -3.6039 0.8922 33 1 2.8727 -3.6047 -0.8877 34 1 0.8547 -5.0450 -0.8894 35 1 0.8528 -5.0447 0.8905 36 1 3.3861 -5.9233 0.0021 37 1 3.8127 -8.2184 0.0023 38 1 1.7649 -9.9485 -0.8870 39 1 1.7654 -9.9478 0.8929 40 1 2.4247 -12.2637 1.0152 41 1 2.4739 -12.4366 -0.7557 42 1 4.3981 -13.4228 -1.8548 43 1 6.3217 -14.9468 -1.6527 44 1 7.2218 -15.5051 0.5702 45 1 6.2044 -14.5320 2.5904 46 1 4.2872 -13.0001 2.3876 47 1 5.3537 -9.3551 -2.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:35 Heat of formation + Delta-G solvation = -138.549512 kcal Electronic energy + Delta-G solvation = -27424.824596 eV Core-core repulsion = 23377.788816 eV Total energy + Delta-G solvation = -4047.035781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 15.91 seconds Orbital eigenvalues (eV) -41.76113 -40.82912 -39.89203 -37.35838 -37.14241 -36.54947 -35.15668 -34.46921 -32.93060 -31.67916 -31.32762 -28.59383 -26.82162 -25.61995 -24.62901 -23.43069 -22.54378 -22.26044 -21.79842 -21.13227 -19.50283 -18.87370 -18.53049 -18.11928 -17.79376 -17.15478 -16.77472 -16.52846 -16.37981 -15.97542 -15.74640 -15.66001 -15.34367 -15.20915 -14.71376 -14.35341 -14.21991 -14.20877 -13.96142 -13.69480 -13.60410 -13.26728 -13.06908 -12.92736 -12.72822 -12.59409 -12.51599 -12.42262 -12.33888 -11.85700 -11.68491 -11.63153 -11.62295 -11.29228 -11.26000 -11.11514 -10.53015 -10.35894 -9.72897 -9.72367 -9.54934 -8.17210 -6.28516 0.46070 0.58514 1.23265 1.43276 1.44542 1.55392 1.72345 2.10586 2.19363 2.43742 2.91253 3.16576 3.32674 3.46301 3.87843 3.93902 4.07790 4.12374 4.21789 4.24310 4.27910 4.36821 4.46087 4.50521 4.60653 4.70182 4.72972 4.74278 4.92330 4.99035 5.00311 5.04421 5.20666 5.21397 5.26860 5.45816 5.51087 5.58571 5.59994 5.66224 5.74779 5.79974 5.84748 5.87221 6.05116 6.21003 6.25425 6.88950 7.01993 7.16913 7.40948 7.62465 8.94774 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.001617 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.755041 B =17315.492843 C =17546.389979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.730 5.730 13 C 0.699 3.301 14 O -0.641 6.641 15 N -0.728 5.728 16 C 0.149 3.851 17 C -0.073 4.073 18 H 0.137 0.863 19 C -0.061 4.061 20 C -0.103 4.103 21 C -0.105 4.105 22 C -0.146 4.146 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.119 4.119 26 C 0.480 3.520 27 O -0.526 6.526 28 O -0.514 6.514 29 H 0.263 0.737 30 H -0.008 1.008 31 H -0.007 1.007 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.412 0.588 37 H 0.415 0.585 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.143 0.857 47 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.710 -30.911 1.671 34.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.385 5.385 13 C 0.398 3.602 14 O -0.523 6.523 15 N -0.387 5.387 16 C 0.025 3.975 17 C -0.093 4.093 18 H 0.154 0.846 19 C -0.099 4.099 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.164 4.164 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.137 4.137 26 C 0.323 3.677 27 O -0.416 6.416 28 O -0.328 6.328 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.248 0.752 37 H 0.253 0.747 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.161 0.839 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 14.322 -31.275 1.827 34.446 hybrid contribution 1.107 1.146 -0.905 1.832 sum 15.429 -30.129 0.922 33.862 Atomic orbital electron populations 1.70114 1.07920 1.27722 1.51721 1.26017 0.95738 1.03513 0.94841 0.85419 0.78693 0.78350 0.78392 1.19911 1.21110 1.18417 1.21693 0.93775 0.92021 1.50376 0.91493 1.18956 0.94500 0.92966 0.95126 1.21584 0.98411 0.91710 1.02125 1.21062 0.91347 0.84635 1.00449 1.45008 1.10821 1.03574 1.79127 1.16118 0.84970 0.81395 0.77698 1.90901 1.16414 1.84850 1.60089 1.44923 1.09601 1.04298 1.79842 1.21122 0.94509 0.78288 1.03608 1.21331 0.96526 0.97069 0.94351 0.84550 1.20466 0.95573 0.88587 1.05277 1.19874 0.98015 0.99062 0.93366 1.21618 0.96033 0.95221 0.99439 1.21419 0.97661 0.99143 0.98205 1.21446 1.00413 1.00207 0.92700 1.21422 0.96859 0.97878 0.99279 1.21375 0.96759 0.98200 0.97324 1.23622 0.76098 0.79727 0.88266 1.90664 1.58139 1.40184 1.52614 1.84413 1.66282 1.35442 1.46623 0.92874 0.98972 0.98859 0.91284 0.91421 0.93667 0.93401 0.75188 0.74725 0.92287 0.89042 0.86724 0.90252 0.85189 0.85825 0.84864 0.84345 0.83923 0.71174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 11 C 0.15 5.26 5.67 86.38 0.49 5.75 16 12 N -0.73 -19.62 5.56 -478.54 -2.66 -22.28 16 13 C 0.70 19.81 8.57 179.06 1.53 21.34 16 14 O -0.64 -24.43 16.34 -3.99 -0.07 -24.50 16 15 N -0.73 -13.17 5.06 -478.55 -2.42 -15.60 16 16 C 0.15 2.25 5.05 86.38 0.44 2.69 16 17 C -0.07 -0.77 2.36 -11.54 -0.03 -0.80 16 18 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 19 C -0.06 -0.65 4.60 29.85 0.14 -0.51 16 20 C -0.10 -1.42 4.84 -19.86 -0.10 -1.51 16 21 C -0.11 -1.80 7.93 22.27 0.18 -1.62 16 22 C -0.15 -2.29 10.05 22.27 0.22 -2.07 16 23 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 24 C -0.14 -1.63 10.05 22.27 0.22 -1.40 16 25 C -0.12 -1.38 9.70 22.27 0.22 -1.17 16 26 C 0.48 6.59 7.37 71.24 0.53 7.12 16 27 O -0.53 -9.80 12.36 21.97 0.27 -9.53 16 28 O -0.51 -5.14 11.42 -51.35 -0.59 -5.73 16 29 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.41 8.19 8.49 -92.71 -0.79 7.40 16 37 H 0.41 5.38 6.96 -92.70 -0.65 4.73 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.11 0.72 8.09 -2.38 -0.02 0.70 16 41 H 0.08 0.99 7.90 -2.39 -0.02 0.97 16 42 H 0.13 2.53 5.86 -2.91 -0.02 2.51 16 43 H 0.12 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.14 0.99 8.06 -2.91 -0.02 0.96 16 47 H 0.43 1.64 9.10 -74.06 -0.67 0.96 16 Total: -1.00 -77.99 393.89 0.81 -77.18 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -1.10 Total: 16.99 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.07 Total: -5.48 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -4.80 Total: -94.50 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.38 Total: -39.76 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -77.99 0.81 -77.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.368 kcal (2) G-P(sol) polarization free energy of solvation -77.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.91 seconds